Cow genome map
| Conread name: | Lym2-sn78_G06.f |
| Conread position: | 1-569 |
| Cow position: | chr17:4081064-4081635 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 105 |
| Conread position: | 1-576 |
| Cow position: | chr17:2587733-2588309 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 117 |
| Conread position: | 4-230 |
| Cow position: | chr17:18302350-18302120 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 20, 106 |
| Conread position: | 4-572 |
| Cow position: | chr17:153035-152483 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 4-574 |
| Cow position: | chr17:4294813-4295351 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 28 |
| Conread position: | 4-576 |
| Cow position: | chr17:14893581-14894156 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 4-576 |
| Cow position: | chr17:20401095-20401676 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 85 |
| Conread position: | 6-453 |
| Cow position: | chr17:2146639-2147079 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 8-248 |
| Cow position: | chr17:55250-55011 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 138, 37 |
| Conread position: | 8-257 |
| Cow position: | chr17:22131371-22131622 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 135, 32 |
| Conread position: | 9-576 |
| Cow position: | chr17:24780473-24781051 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 102 |
| Conread position: | 10-575 |
| Cow position: | chr17:31200644-31200067 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 12-257 |
| Cow position: | chr17:6259133-6259382 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 18-286 |
| Cow position: | chr17:32024759-32024485 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 18-544 |
| Cow position: | chr17:22430042-22429512 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 18-576 |
| Cow position: | chr17:2286815-2287389 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 31 |
| Conread position: | 18-576 |
| Cow position: | chr17:27345246-27345802 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 31 |
| Conread position: | 18-576 |
| Cow position: | chr17:44853485-44852929 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 32 |
| Conread position: | 20-238 |
| Cow position: | chr17:12670900-12670677 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 96 |
| Conread position: | 23-441 |
| Cow position: | chr17:2579004-2579424 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 81 |
| Conread position: | 31-567 |
| Cow position: | chr17:4286567-4287076 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 350 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 31-576 |
| Cow position: | chr17:42263974-42264506 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 366 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 33-387 |
| Cow position: | chr17:39933140-39933495 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 67 |
| Conread position: | 36-576 |
| Cow position: | chr17:14308850-14308310 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 358 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 137, 72 |
| Conread position: | 37-225 |
| Cow position: | chr17:16900448-16900259 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 103, 65 |
| Conread position: | 37-425 |
| Cow position: | chr17:11782827-11783222 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-428 |
| Cow position: | chr17:40803849-40804250 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 155 |
| Conread position: | 37-552 |
| Cow position: | chr17:15322287-15322788 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 69 |
| Conread position: | 37-573 |
| Cow position: | chr17:22160372-22160916 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-574 |
| Cow position: | chr17:2249125-2248583 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 71 |
| Conread position: | 37-574 |
| Cow position: | chr17:20666270-20665725 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-575 |
| Cow position: | chr17:3643379-3642834 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-576 |
| Cow position: | chr17:228839-228305 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 73 |
| Conread position: | 37-576 |
| Cow position: | chr17:1383355-1382811 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-576 |
| Cow position: | chr17:2261573-2262109 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 67 |
| Conread position: | 37-576 |
| Cow position: | chr17:4059563-4060103 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 65 |
| Conread position: | 37-576 |
| Cow position: | chr17:8208566-8209109 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 37-576 |
| Cow position: | chr17:9653993-9653453 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-576 |
| Cow position: | chr17:13929130-13929671 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 68 |
| Conread position: | 37-576 |
| Cow position: | chr17:14217568-14217020 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-576 |
| Cow position: | chr17:15143904-15143364 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 57 |
| Conread position: | 37-576 |
| Cow position: | chr17:15435251-15435794 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-576 |
| Cow position: | chr17:18104224-18103677 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 69 |
| Conread position: | 37-576 |
| Cow position: | chr17:24633413-24633957 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-576 |
| Cow position: | chr17:25737120-25737666 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 64 |
| Conread position: | 38-323 |
| Cow position: | chr17:19609442-19609159 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 43-484 |
| Cow position: | chr17:28109558-28109996 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 65 |
| Conread position: | 43-575 |
| Cow position: | chr17:4671675-4672193 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 6 |
| Conread position: | 43-576 |
| Cow position: | chr17:15157490-15156961 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 65 |
| Conread position: | 45-469 |
| Cow position: | chr17:15370545-15370966 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 33 |
| Conread position: | 48-486 |
| Cow position: | chr17:249396-249829 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 56 |
| Conread position: | 48-575 |
| Cow position: | chr17:16860102-16859554 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 56 |
| Conread position: | 48-576 |
| Cow position: | chr17:11088253-11087721 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 58 |
| Conread position: | 49-571 |
| Cow position: | chr17:16889599-16890117 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 60 |
| Conread position: | 50-574 |
| Cow position: | chr17:13857305-13856768 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 52 |
| Conread position: | 51-576 |
| Cow position: | chr17:35591695-35592216 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 36 |
| Conread position: | 52-522 |
| Cow position: | chr17:1284285-1283841 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 56 |
| Conread position: | 52-576 |
| Cow position: | chr17:23857579-23857031 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 66-576 |
| Cow position: | chr17:14326005-14325499 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 16 |
| Conread position: | 72-576 |
| Cow position: | chr17:6089670-6089158 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 74-574 |
| Cow position: | chr17:19269868-19269365 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 79-576 |
| Cow position: | chr17:2173381-2173881 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 83-261 |
| Cow position: | chr17:20088253-20088069 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 77, 21 |
| Conread position: | 110-405 |
| Cow position: | chr17:2737907-2738208 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 280 |
| Conread position: | 113-567 |
| Cow position: | chr17:1879623-1880085 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 278 |
| Conread position: | 150-576 |
| Cow position: | chr17:43988111-43988536 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 95 |
| Conread position: | 153-575 |
| Cow position: | chr17:23324869-23324452 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 162 |
| Conread position: | 164-576 |
| Cow position: | chr17:20183639-20183228 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 87 |
| Conread position: | 174-562 |
| Cow position: | chr17:1658960-1658586 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 108, 76 |
| Conread position: | 188-452 |
| Cow position: | chr17:3710448-3710184 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 188-565 |
| Cow position: | chr17:18185913-18185541 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 195 |
| Conread position: | 188-576 |
| Cow position: | chr17:1946587-1946978 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 200 |
| Conread position: | 242-576 |
| Cow position: | chr17:6259513-6259848 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 250-537 |
| Cow position: | chr17:20088055-20087768 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 250-576 |
| Cow position: | chr17:22131909-22132233 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 273-524 |
| Cow position: | chr17:18192914-18193149 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 243, 16 |
| Conread position: | 304-574 |
| Cow position: | chr17:18027027-18026756 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 87 |
Show alignments to all cow chromosomes.