Cow genome map
| Conread name: | Lym2-sn78_G06.f |
| Conread position: | 1-141 |
| Cow position: | chr18:43200420-43200561 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 1-420 |
| Cow position: | chr18:45958325-45958736 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 1-576 |
| Cow position: | chr18:27838676-27838105 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 4-224 |
| Cow position: | chr18:42244921-42244700 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 18, 108 |
| Conread position: | 4-576 |
| Cow position: | chr18:37599905-37599331 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 8-576 |
| Cow position: | chr18:33358503-33359076 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 32 |
| Conread position: | 9-524 |
| Cow position: | chr18:16660368-16659846 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 9-573 |
| Cow position: | chr18:33335507-33336075 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 74 |
| Conread position: | 9-574 |
| Cow position: | chr18:29945855-29946392 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 377 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 10-265 |
| Cow position: | chr18:35287887-35288146 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 17, 101 |
| Conread position: | 10-573 |
| Cow position: | chr18:55089292-55088717 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 10-575 |
| Cow position: | chr18:16078338-16078927 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 16-576 |
| Cow position: | chr18:35335127-35335690 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 89 |
| Conread position: | 17-576 |
| Cow position: | chr18:51257628-51258194 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 18-576 |
| Cow position: | chr18:32293425-32293978 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 24 |
| Conread position: | 18-576 |
| Cow position: | chr18:39748232-39748789 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 24 |
| Conread position: | 18-576 |
| Cow position: | chr18:43147283-43146715 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 18-576 |
| Cow position: | chr18:48221521-48222090 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 78 |
| Conread position: | 19-576 |
| Cow position: | chr18:54172200-54171649 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 78 |
| Conread position: | 27-576 |
| Cow position: | chr18:47719913-47719373 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 9 |
| Conread position: | 30-576 |
| Cow position: | chr18:2020023-2019474 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 37-199 |
| Cow position: | chr18:29236443-29236609 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 122, 69 |
| Conread position: | 37-261 |
| Cow position: | chr18:14129959-14130188 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 110, 63 |
| Conread position: | 37-381 |
| Cow position: | chr18:37585999-37585649 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-431 |
| Cow position: | chr18:51660088-51660481 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 71 |
| Conread position: | 37-516 |
| Cow position: | chr18:44621421-44621908 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-576 |
| Cow position: | chr18:11275424-11274895 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 68 |
| Conread position: | 37-576 |
| Cow position: | chr18:14415643-14416187 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-576 |
| Cow position: | chr18:16176942-16176403 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 67 |
| Conread position: | 37-576 |
| Cow position: | chr18:23797315-23797858 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 69 |
| Conread position: | 37-576 |
| Cow position: | chr18:33953903-33953358 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-576 |
| Cow position: | chr18:36507997-36508543 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 69 |
| Conread position: | 37-576 |
| Cow position: | chr18:37504730-37505275 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-576 |
| Cow position: | chr18:41841161-41840614 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 67 |
| Conread position: | 37-576 |
| Cow position: | chr18:47741682-47742229 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-576 |
| Cow position: | chr18:51480504-51481050 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 69 |
| Conread position: | 40-381 |
| Cow position: | chr18:25349707-25350054 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 40-575 |
| Cow position: | chr18:54024688-54024150 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 62 |
| Conread position: | 40-576 |
| Cow position: | chr18:28974230-28973692 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 43-276 |
| Cow position: | chr18:54002174-54002401 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 43-576 |
| Cow position: | chr18:22602157-22602698 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 67 |
| Conread position: | 45-576 |
| Cow position: | chr18:19352050-19352596 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 67 |
| Conread position: | 48-566 |
| Cow position: | chr18:9187087-9186568 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 49-576 |
| Cow position: | chr18:1520804-1521339 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 61 |
| Conread position: | 49-576 |
| Cow position: | chr18:23944695-23944164 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 59 |
| Conread position: | 52-576 |
| Cow position: | chr18:51310266-51310796 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 52 |
| Conread position: | 53-576 |
| Cow position: | chr18:33268524-33269036 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 57 |
| Conread position: | 57-576 |
| Cow position: | chr18:40478069-40478594 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 58-528 |
| Cow position: | chr18:17992876-17992402 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 50 |
| Conread position: | 59-408 |
| Cow position: | chr18:32651682-32652036 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 47 |
| Conread position: | 64-488 |
| Cow position: | chr18:27986720-27987148 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 37 |
| Conread position: | 79-379 |
| Cow position: | chr18:19540164-19539862 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 29 |
| Conread position: | 97-576 |
| Cow position: | chr18:44601267-44601730 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 53, 7 |
| Conread position: | 120-381 |
| Cow position: | chr18:51464725-51464462 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 24, 132 |
| Conread position: | 132-576 |
| Cow position: | chr18:16393881-16393437 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 151-574 |
| Cow position: | chr18:16533768-16534187 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 25 |
| Conread position: | 154-576 |
| Cow position: | chr18:43200850-43201265 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 97 |
| Conread position: | 155-576 |
| Cow position: | chr18:6869469-6869048 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 171-576 |
| Cow position: | chr18:2887222-2886810 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 173-513 |
| Cow position: | chr18:16877290-16877623 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 112, 77 |
| Conread position: | 175-387 |
| Cow position: | chr18:54269276-54269487 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 113, 85 |
| Conread position: | 188-576 |
| Cow position: | chr18:53785660-53786050 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 156 |
| Conread position: | 191-576 |
| Cow position: | chr18:51689449-51689835 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 202 |
| Conread position: | 220-375 |
| Cow position: | chr18:40345472-40345315 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 137 |
| Conread position: | 230-413 |
| Cow position: | chr18:22869616-22869801 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 18, 164 |
| Conread position: | 234-574 |
| Cow position: | chr18:54044836-54044499 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 112 |
| Conread position: | 242-575 |
| Cow position: | chr18:51341562-51341896 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 8 |
| Conread position: | 250-558 |
| Cow position: | chr18:35288415-35288729 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 34, 63 |
Show alignments to all cow chromosomes.