Cow genome map

Conread name: Lym2-sn78_G06.f

Conread position: 1-414
Cow position: chr20:8994234-8993811 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 291
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 22, 129

Conread position: 1-576
Cow position: chr20:5534530-5535109 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 104

Conread position: 2-559
Cow position: chr20:2676704-2677270 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 106

Conread position: 4-511
Cow position: chr20:29572594-29572088 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 32

Conread position: 4-573
Cow position: chr20:22206121-22206705 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 110

Conread position: 8-518
Cow position: chr20:28593335-28593854 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 102

Conread position: 8-576
Cow position: chr20:3252540-3251962 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 32

Conread position: 9-514
Cow position: chr20:22718076-22717586 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 25

Conread position: 9-575
Cow position: chr20:20905591-20905034 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 379
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 24, 103

Conread position: 10-576
Cow position: chr20:13665573-13665038 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 57

Conread position: 18-503
Cow position: chr20:4800033-4799554 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 32

Conread position: 19-576
Cow position: chr20:13762514-13763076 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 18

Conread position: 36-238
Cow position: chr20:29947810-29948016 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 111, 68

Conread position: 36-282
Cow position: chr20:5575317-5575555 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 169, 68

Conread position: 36-558
Cow position: chr20:2791725-2791199 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 351
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 108, 69

Conread position: 36-576
Cow position: chr20:28160405-28160943 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 70

Conread position: 36-576
Cow position: chr20:31379244-31378714 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 18

Conread position: 37-193
Cow position: chr20:35118873-35119032 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 109, 65

Conread position: 37-260
Cow position: chr20:8004887-8004662 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 176
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 110, 20

Conread position: 37-473
Cow position: chr20:10846450-10846010 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 69

Conread position: 37-546
Cow position: chr20:21393198-21393706 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-567
Cow position: chr20:23798508-23799045 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 69

Conread position: 37-576
Cow position: chr20:822383-822939 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 71

Conread position: 37-576
Cow position: chr20:7116845-7116297 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 71

Conread position: 37-576
Cow position: chr20:12439134-12438589 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 29

Conread position: 37-576
Cow position: chr20:15291673-15292182 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 67

Conread position: 37-576
Cow position: chr20:18315954-18315423 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 67

Conread position: 37-576
Cow position: chr20:19437590-19438119 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 73

Conread position: 37-576
Cow position: chr20:23470035-23469487 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 67

Conread position: 38-576
Cow position: chr20:5561089-5560543 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 72

Conread position: 40-576
Cow position: chr20:25851362-25850819 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 64

Conread position: 42-315
Cow position: chr20:11276657-11276386 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 37, 20

Conread position: 42-576
Cow position: chr20:21913957-21914499 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 63

Conread position: 43-246
Cow position: chr20:31124037-31124244 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 101, 67

Conread position: 43-508
Cow position: chr20:35973770-35973307 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 67

Conread position: 43-576
Cow position: chr20:15098237-15097706 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 62

Conread position: 43-576
Cow position: chr20:27868829-27869369 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 55

Conread position: 43-576
Cow position: chr20:30683970-30684507 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 62

Conread position: 45-387
Cow position: chr20:35103583-35103928 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 225
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 106, 56

Conread position: 45-576
Cow position: chr20:15064396-15064938 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 67

Conread position: 49-316
Cow position: chr20:3032575-3032840 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 55

Conread position: 49-576
Cow position: chr20:5483831-5484361 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 56

Conread position: 49-576
Cow position: chr20:8313793-8313268 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 33

Conread position: 49-576
Cow position: chr20:24614187-24614706 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 59

Conread position: 50-504
Cow position: chr20:10102904-10102461 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 32

Conread position: 57-576
Cow position: chr20:3270368-3270876 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 47

Conread position: 61-469
Cow position: chr20:35118982-35119389 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 250
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 97, 21

Conread position: 66-576
Cow position: chr20:9954301-9953814 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 40

Conread position: 66-576
Cow position: chr20:28565946-28565424 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 39

Conread position: 95-562
Cow position: chr20:7085885-7085426 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 300
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 59, 9

Conread position: 146-576
Cow position: chr20:35119312-35119742 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 169

Conread position: 158-441
Cow position: chr20:19192378-19192093 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 236

Conread position: 173-576
Cow position: chr20:11679345-11678938 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 221

Conread position: 203-436
Cow position: chr20:24390168-24390394 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 45, 183

Conread position: 228-575
Cow position: chr20:29948338-29948670 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 247
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 20, 87

Conread position: 280-571
Cow position: chr20:15947519-15947211 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 103

Conread position: 292-576
Cow position: chr20:25960990-25961275 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 101

Conread position: 306-576
Cow position: chr20:3032965-3033233 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 45

Conread position: 309-576
Cow position: chr20:13680153-13679886 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 83

Conread position: 366-576
Cow position: chr20:3684524-3684316 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 26, 0

Show alignments to all cow chromosomes.