Cow genome map

Conread name: Lym2-sn78_G06.f

Conread position: 4-175
Cow position: chr21:41952894-41953064 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 122, 26

Conread position: 4-562
Cow position: chr21:25992904-25992356 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 24

Conread position: 4-567
Cow position: chr21:23860486-23861068 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 108

Conread position: 4-576
Cow position: chr21:4183252-4183811 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 4-576
Cow position: chr21:48115821-48116392 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 33

Conread position: 7-576
Cow position: chr21:3426203-3426776 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 32

Conread position: 8-576
Cow position: chr21:47939197-47939767 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 32

Conread position: 9-485
Cow position: chr21:21516921-21517387 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 63

Conread position: 10-528
Cow position: chr21:358737-359259 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 37

Conread position: 10-537
Cow position: chr21:33755001-33755555 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 107

Conread position: 10-576
Cow position: chr21:2510370-2510942 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 85

Conread position: 12-141
Cow position: chr21:35089420-35089550 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 88

Conread position: 12-571
Cow position: chr21:7267816-7267259 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 81

Conread position: 12-576
Cow position: chr21:1292455-1291900 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 90

Conread position: 18-576
Cow position: chr21:2530404-2529836 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 86

Conread position: 18-576
Cow position: chr21:35596103-35596659 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 86

Conread position: 19-574
Cow position: chr21:20745017-20744476 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 86

Conread position: 19-576
Cow position: chr21:2769728-2769170 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 41

Conread position: 36-330
Cow position: chr21:34055170-34054870 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 196
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 120, 66

Conread position: 36-372
Cow position: chr21:4083398-4083732 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 228
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 118, 46

Conread position: 36-431
Cow position: chr21:444885-445268 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 262
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 252, 62

Conread position: 37-340
Cow position: chr21:40272066-40271766 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 73

Conread position: 37-367
Cow position: chr21:28529798-28529463 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 69

Conread position: 37-416
Cow position: chr21:17572674-17573050 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 53

Conread position: 37-441
Cow position: chr21:1190786-1191202 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 69

Conread position: 37-489
Cow position: chr21:27708506-27708965 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 73

Conread position: 37-516
Cow position: chr21:26819269-26818792 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 71

Conread position: 37-573
Cow position: chr21:21948053-21947515 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 358
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 10, 24

Conread position: 37-575
Cow position: chr21:10566424-10566963 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 20

Conread position: 37-576
Cow position: chr21:145664-146214 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-576
Cow position: chr21:2476763-2476236 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 45

Conread position: 37-576
Cow position: chr21:3778512-3779057 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 63

Conread position: 37-576
Cow position: chr21:4090394-4090940 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 68

Conread position: 37-576
Cow position: chr21:10849824-10850371 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 68

Conread position: 37-576
Cow position: chr21:11453909-11453365 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 73

Conread position: 37-576
Cow position: chr21:11505331-11505878 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-576
Cow position: chr21:12056253-12055710 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-576
Cow position: chr21:23811657-23812166 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 45

Conread position: 37-576
Cow position: chr21:26638712-26638174 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 68

Conread position: 37-576
Cow position: chr21:30600169-30599635 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 20

Conread position: 37-576
Cow position: chr21:31559903-31559365 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 68

Conread position: 37-576
Cow position: chr21:37044666-37045201 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 45

Conread position: 37-576
Cow position: chr21:39424814-39425354 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 71

Conread position: 37-576
Cow position: chr21:46915336-46915879 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 73

Conread position: 40-392
Cow position: chr21:2501684-2502032 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 69

Conread position: 40-576
Cow position: chr21:2883987-2883457 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 64

Conread position: 42-184
Cow position: chr21:29086240-29086383 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 8, 66

Conread position: 42-576
Cow position: chr21:2415994-2416519 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 66

Conread position: 43-224
Cow position: chr21:4590207-4590031 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 43-550
Cow position: chr21:33251142-33251657 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 61

Conread position: 45-576
Cow position: chr21:2789225-2788701 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 5

Conread position: 49-526
Cow position: chr21:3615051-3615534 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 19

Conread position: 49-547
Cow position: chr21:2716913-2716420 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 59

Conread position: 49-576
Cow position: chr21:4222939-4222397 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 59

Conread position: 49-576
Cow position: chr21:13124240-13123715 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 50

Conread position: 50-575
Cow position: chr21:9891370-9891882 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 56

Conread position: 52-561
Cow position: chr21:34259453-34258954 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 52

Conread position: 52-576
Cow position: chr21:47947875-47948400 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 56

Conread position: 53-576
Cow position: chr21:4076607-4077130 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 55

Conread position: 57-567
Cow position: chr21:2674873-2674346 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 47

Conread position: 58-576
Cow position: chr21:34292784-34293307 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 50

Conread position: 60-576
Cow position: chr21:6699794-6699287 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 350
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 73, 44

Conread position: 68-576
Cow position: chr21:30561577-30562093 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 36

Conread position: 81-571
Cow position: chr21:36714428-36714915 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 27

Conread position: 151-576
Cow position: chr21:2541552-2541121 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 13

Conread position: 155-389
Cow position: chr21:27623-27846 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 135, 25

Conread position: 188-576
Cow position: chr21:4456729-4457117 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 22

Conread position: 250-576
Cow position: chr21:4590027-4589700 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 102

Conread position: 268-558
Cow position: chr21:27282368-27282667 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 207
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 23, 116

Conread position: 277-576
Cow position: chr21:8678370-8678069 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 115

Conread position: 279-576
Cow position: chr21:6339558-6339857 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 113

Conread position: 285-575
Cow position: chr21:37147517-37147799 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 195
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 9, 5

Show alignments to all cow chromosomes.