Cow genome map
Conread name: | Lym2-sn78_G06.f |
Conread position: | 4-175 |
Cow position: | chr21:41952894-41953064 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 132 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 122, 26 |
Conread position: | 4-562 |
Cow position: | chr21:25992904-25992356 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 152, 24 |
Conread position: | 4-567 |
Cow position: | chr21:23860486-23861068 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 108 |
Conread position: | 4-576 |
Cow position: | chr21:4183252-4183811 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 15 |
Conread position: | 4-576 |
Cow position: | chr21:48115821-48116392 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 33 |
Conread position: | 7-576 |
Cow position: | chr21:3426203-3426776 (view UCSC Genome Browser custom track) |
Alignm length: | 583 |
Alignm identity: | 418 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 32 |
Conread position: | 8-576 |
Cow position: | chr21:47939197-47939767 (view UCSC Genome Browser custom track) |
Alignm length: | 590 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 32 |
Conread position: | 9-485 |
Cow position: | chr21:21516921-21517387 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 63 |
Conread position: | 10-528 |
Cow position: | chr21:358737-359259 (view UCSC Genome Browser custom track) |
Alignm length: | 531 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 37 |
Conread position: | 10-537 |
Cow position: | chr21:33755001-33755555 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 107 |
Conread position: | 10-576 |
Cow position: | chr21:2510370-2510942 (view UCSC Genome Browser custom track) |
Alignm length: | 580 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 85 |
Conread position: | 12-141 |
Cow position: | chr21:35089420-35089550 (view UCSC Genome Browser custom track) |
Alignm length: | 132 |
Alignm identity: | 103 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 20, 88 |
Conread position: | 12-571 |
Cow position: | chr21:7267816-7267259 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 81 |
Conread position: | 12-576 |
Cow position: | chr21:1292455-1291900 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 90 |
Conread position: | 18-576 |
Cow position: | chr21:2530404-2529836 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 86 |
Conread position: | 18-576 |
Cow position: | chr21:35596103-35596659 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 86 |
Conread position: | 19-574 |
Cow position: | chr21:20745017-20744476 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 86 |
Conread position: | 19-576 |
Cow position: | chr21:2769728-2769170 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 41 |
Conread position: | 36-330 |
Cow position: | chr21:34055170-34054870 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 196 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 120, 66 |
Conread position: | 36-372 |
Cow position: | chr21:4083398-4083732 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 228 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 118, 46 |
Conread position: | 36-431 |
Cow position: | chr21:444885-445268 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 262 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 252, 62 |
Conread position: | 37-340 |
Cow position: | chr21:40272066-40271766 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 73 |
Conread position: | 37-367 |
Cow position: | chr21:28529798-28529463 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 69 |
Conread position: | 37-416 |
Cow position: | chr21:17572674-17573050 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 53 |
Conread position: | 37-441 |
Cow position: | chr21:1190786-1191202 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 69 |
Conread position: | 37-489 |
Cow position: | chr21:27708506-27708965 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 73 |
Conread position: | 37-516 |
Cow position: | chr21:26819269-26818792 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 71 |
Conread position: | 37-573 |
Cow position: | chr21:21948053-21947515 (view UCSC Genome Browser custom track) |
Alignm length: | 556 |
Alignm identity: | 358 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 10, 24 |
Conread position: | 37-575 |
Cow position: | chr21:10566424-10566963 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 20 |
Conread position: | 37-576 |
Cow position: | chr21:145664-146214 (view UCSC Genome Browser custom track) |
Alignm length: | 553 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 67 |
Conread position: | 37-576 |
Cow position: | chr21:2476763-2476236 (view UCSC Genome Browser custom track) |
Alignm length: | 550 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 45 |
Conread position: | 37-576 |
Cow position: | chr21:3778512-3779057 (view UCSC Genome Browser custom track) |
Alignm length: | 551 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 63 |
Conread position: | 37-576 |
Cow position: | chr21:4090394-4090940 (view UCSC Genome Browser custom track) |
Alignm length: | 551 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 68 |
Conread position: | 37-576 |
Cow position: | chr21:10849824-10850371 (view UCSC Genome Browser custom track) |
Alignm length: | 551 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 68 |
Conread position: | 37-576 |
Cow position: | chr21:11453909-11453365 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 73 |
Conread position: | 37-576 |
Cow position: | chr21:11505331-11505878 (view UCSC Genome Browser custom track) |
Alignm length: | 550 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 71 |
Conread position: | 37-576 |
Cow position: | chr21:12056253-12055710 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 71 |
Conread position: | 37-576 |
Cow position: | chr21:23811657-23812166 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 395 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 251, 45 |
Conread position: | 37-576 |
Cow position: | chr21:26638712-26638174 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 211, 68 |
Conread position: | 37-576 |
Cow position: | chr21:30600169-30599635 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 20 |
Conread position: | 37-576 |
Cow position: | chr21:31559903-31559365 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 211, 68 |
Conread position: | 37-576 |
Cow position: | chr21:37044666-37045201 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 45 |
Conread position: | 37-576 |
Cow position: | chr21:39424814-39425354 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 211, 71 |
Conread position: | 37-576 |
Cow position: | chr21:46915336-46915879 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 73 |
Conread position: | 40-392 |
Cow position: | chr21:2501684-2502032 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 69 |
Conread position: | 40-576 |
Cow position: | chr21:2883987-2883457 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 64 |
Conread position: | 42-184 |
Cow position: | chr21:29086240-29086383 (view UCSC Genome Browser custom track) |
Alignm length: | 145 |
Alignm identity: | 107 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 8, 66 |
Conread position: | 42-576 |
Cow position: | chr21:2415994-2416519 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 66 |
Conread position: | 43-224 |
Cow position: | chr21:4590207-4590031 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 136 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 43-550 |
Cow position: | chr21:33251142-33251657 (view UCSC Genome Browser custom track) |
Alignm length: | 518 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 61 |
Conread position: | 45-576 |
Cow position: | chr21:2789225-2788701 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 219, 5 |
Conread position: | 49-526 |
Cow position: | chr21:3615051-3615534 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 19 |
Conread position: | 49-547 |
Cow position: | chr21:2716913-2716420 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 198, 59 |
Conread position: | 49-576 |
Cow position: | chr21:4222939-4222397 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 59 |
Conread position: | 49-576 |
Cow position: | chr21:13124240-13123715 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 50 |
Conread position: | 50-575 |
Cow position: | chr21:9891370-9891882 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 56 |
Conread position: | 52-561 |
Cow position: | chr21:34259453-34258954 (view UCSC Genome Browser custom track) |
Alignm length: | 519 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 52 |
Conread position: | 52-576 |
Cow position: | chr21:47947875-47948400 (view UCSC Genome Browser custom track) |
Alignm length: | 531 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 194, 56 |
Conread position: | 53-576 |
Cow position: | chr21:4076607-4077130 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 55 |
Conread position: | 57-567 |
Cow position: | chr21:2674873-2674346 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 47 |
Conread position: | 58-576 |
Cow position: | chr21:34292784-34293307 (view UCSC Genome Browser custom track) |
Alignm length: | 529 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 50 |
Conread position: | 60-576 |
Cow position: | chr21:6699794-6699287 (view UCSC Genome Browser custom track) |
Alignm length: | 532 |
Alignm identity: | 350 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 73, 44 |
Conread position: | 68-576 |
Cow position: | chr21:30561577-30562093 (view UCSC Genome Browser custom track) |
Alignm length: | 519 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 36 |
Conread position: | 81-571 |
Cow position: | chr21:36714428-36714915 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 27 |
Conread position: | 151-576 |
Cow position: | chr21:2541552-2541121 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 13 |
Conread position: | 155-389 |
Cow position: | chr21:27623-27846 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 179 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 135, 25 |
Conread position: | 188-576 |
Cow position: | chr21:4456729-4457117 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 22 |
Conread position: | 250-576 |
Cow position: | chr21:4590027-4589700 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 102 |
Conread position: | 268-558 |
Cow position: | chr21:27282368-27282667 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 207 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 23, 116 |
Conread position: | 277-576 |
Cow position: | chr21:8678370-8678069 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 115 |
Conread position: | 279-576 |
Cow position: | chr21:6339558-6339857 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 113 |
Conread position: | 285-575 |
Cow position: | chr21:37147517-37147799 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 195 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 9, 5 |
Show alignments to all cow chromosomes.