Cow genome map

Conread name: Lym2-sn78_G06.f

Conread position: 4-342
Cow position: chr22:1046918-1047260 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 239
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 28, 105

Conread position: 4-486
Cow position: chr22:1285397-1284906 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 104

Conread position: 4-575
Cow position: chr22:8136666-8136087 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 26

Conread position: 4-576
Cow position: chr22:11030518-11031078 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 38

Conread position: 4-576
Cow position: chr22:32348424-32347864 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 38

Conread position: 4-576
Cow position: chr22:33350699-33351286 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 67

Conread position: 5-532
Cow position: chr22:45880572-45880038 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 26

Conread position: 6-576
Cow position: chr22:44609177-44609714 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 101

Conread position: 7-576
Cow position: chr22:7277058-7277639 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 103

Conread position: 8-181
Cow position: chr22:40380742-40380916 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 32

Conread position: 8-262
Cow position: chr22:42771093-42771348 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 152, 32

Conread position: 9-447
Cow position: chr22:37073608-37073205 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 303
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 33, 98

Conread position: 9-541
Cow position: chr22:1321164-1321690 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 100

Conread position: 9-576
Cow position: chr22:6504111-6503559 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 71

Conread position: 10-575
Cow position: chr22:44489427-44490004 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 223

Conread position: 10-576
Cow position: chr22:5233756-5233187 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 102

Conread position: 10-576
Cow position: chr22:16200035-16200592 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 102

Conread position: 13-342
Cow position: chr22:46585769-46585428 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 238
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 8, 102

Conread position: 13-576
Cow position: chr22:693184-693744 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 98

Conread position: 14-442
Cow position: chr22:309272-309695 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 84

Conread position: 18-576
Cow position: chr22:5672289-5672855 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 88

Conread position: 18-576
Cow position: chr22:41420135-41419576 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 19-222
Cow position: chr22:12732510-12732311 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 87

Conread position: 19-246
Cow position: chr22:526358-526125 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 88

Conread position: 19-415
Cow position: chr22:118261-117860 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 30

Conread position: 19-576
Cow position: chr22:3307160-3306626 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 59

Conread position: 36-483
Cow position: chr22:302413-301966 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 285
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 77, 219

Conread position: 37-349
Cow position: chr22:44456883-44457206 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 73

Conread position: 37-361
Cow position: chr22:13772367-13772681 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 231
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 133, 65

Conread position: 37-381
Cow position: chr22:18476189-18475844 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 71

Conread position: 37-501
Cow position: chr22:6984826-6985296 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 73

Conread position: 37-559
Cow position: chr22:327577-327058 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 73

Conread position: 37-559
Cow position: chr22:1293920-1293395 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 68

Conread position: 37-567
Cow position: chr22:37265023-37265562 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-569
Cow position: chr22:20207612-20207073 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 336
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 99, 68

Conread position: 37-574
Cow position: chr22:46636122-46635598 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 11

Conread position: 37-575
Cow position: chr22:5307688-5308221 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 72

Conread position: 37-575
Cow position: chr22:31312916-31313458 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-576
Cow position: chr22:561127-560587 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 35

Conread position: 37-576
Cow position: chr22:3278778-3278236 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 71

Conread position: 37-576
Cow position: chr22:10546222-10546763 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 73

Conread position: 37-576
Cow position: chr22:10910280-10909715 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-576
Cow position: chr22:15850917-15851447 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 61

Conread position: 37-576
Cow position: chr22:17329165-17328621 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 45

Conread position: 37-576
Cow position: chr22:21588904-21589442 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-576
Cow position: chr22:24949401-24949948 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-576
Cow position: chr22:27310205-27309655 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-576
Cow position: chr22:34167903-34168450 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 64

Conread position: 37-576
Cow position: chr22:39469945-39469405 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 24

Conread position: 37-576
Cow position: chr22:44370042-44369506 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-576
Cow position: chr22:44933551-44934097 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 67

Conread position: 40-386
Cow position: chr22:44395357-44395708 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 64

Conread position: 40-574
Cow position: chr22:44353373-44352841 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 64

Conread position: 40-576
Cow position: chr22:1270930-1270414 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 17

Conread position: 43-574
Cow position: chr22:37131228-37131760 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 43-576
Cow position: chr22:19144120-19143581 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 58

Conread position: 43-576
Cow position: chr22:35672778-35672238 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 65

Conread position: 45-575
Cow position: chr22:36861951-36861413 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 60

Conread position: 48-576
Cow position: chr22:31335450-31334917 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 60

Conread position: 48-576
Cow position: chr22:42990754-42991290 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 58

Conread position: 49-296
Cow position: chr22:36534381-36534126 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 55

Conread position: 49-342
Cow position: chr22:37067325-37067031 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 219
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 113, 60

Conread position: 49-574
Cow position: chr22:46852926-46853459 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 59

Conread position: 49-576
Cow position: chr22:1318978-1319515 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 60

Conread position: 49-576
Cow position: chr22:39882589-39882058 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 59

Conread position: 55-405
Cow position: chr22:41474738-41474389 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 236
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 193, 6

Conread position: 57-576
Cow position: chr22:18816790-18816267 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 47

Conread position: 58-420
Cow position: chr22:10077154-10076796 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 260
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 101, 31

Conread position: 58-576
Cow position: chr22:36736367-36736876 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 50

Conread position: 68-576
Cow position: chr22:158312-157789 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 40

Conread position: 68-576
Cow position: chr22:293550-293042 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 33

Conread position: 75-576
Cow position: chr22:32485718-32485234 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 29

Conread position: 87-576
Cow position: chr22:1878415-1878911 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 21

Conread position: 94-444
Cow position: chr22:4065269-4065625 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 16

Conread position: 96-422
Cow position: chr22:9657954-9658284 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 228
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 54, 48

Conread position: 122-576
Cow position: chr22:36267032-36267478 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 132

Conread position: 151-573
Cow position: chr22:34598367-34598782 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 55

Conread position: 154-576
Cow position: chr22:5933287-5932878 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 93

Conread position: 174-576
Cow position: chr22:44474991-44475362 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 267
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 182, 75

Conread position: 188-527
Cow position: chr22:27283776-27284113 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 9

Conread position: 191-576
Cow position: chr22:36183488-36183876 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 28

Conread position: 195-575
Cow position: chr22:27386698-27386314 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 191

Conread position: 216-576
Cow position: chr22:36274560-36274928 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 251
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 35, 148

Conread position: 228-576
Cow position: chr22:536867-537219 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 167

Conread position: 233-576
Cow position: chr22:13917278-13917621 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 17

Conread position: 242-555
Cow position: chr22:12732061-12731754 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 49, 8

Conread position: 293-576
Cow position: chr22:36533903-36533625 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 50

Conread position: 295-574
Cow position: chr22:46547828-46547548 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 97

Conread position: 311-576
Cow position: chr22:6020514-6020780 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 161
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 208, 81

Conread position: 424-576
Cow position: chr22:1860847-1860693 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 94, 0

Show alignments to all cow chromosomes.