Cow genome map
| Conread name: | Lym2-sn78_G06.f |
| Conread position: | 1-542 |
| Cow position: | chr24:17187170-17187710 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 34 |
| Conread position: | 1-567 |
| Cow position: | chr24:32330961-32331511 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 63 |
| Conread position: | 4-297 |
| Cow position: | chr24:35991030-35990737 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 4-323 |
| Cow position: | chr24:32125873-32125562 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 103 |
| Conread position: | 4-367 |
| Cow position: | chr24:12207769-12208126 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 158, 26 |
| Conread position: | 4-473 |
| Cow position: | chr24:12289099-12288630 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 60 |
| Conread position: | 4-541 |
| Cow position: | chr24:15392680-15392155 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 108 |
| Conread position: | 4-574 |
| Cow position: | chr24:12236681-12237256 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 105 |
| Conread position: | 4-576 |
| Cow position: | chr24:4415908-4415325 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 101 |
| Conread position: | 4-576 |
| Cow position: | chr24:38635364-38635958 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 4-576 |
| Cow position: | chr24:39678066-39678613 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 103 |
| Conread position: | 8-340 |
| Cow position: | chr24:6057302-6057639 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 9-576 |
| Cow position: | chr24:12161507-12162080 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 10-286 |
| Cow position: | chr24:37216354-37216645 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 101 |
| Conread position: | 10-574 |
| Cow position: | chr24:6144986-6145570 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 98 |
| Conread position: | 10-574 |
| Cow position: | chr24:35841979-35841420 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 107 |
| Conread position: | 10-576 |
| Cow position: | chr24:1447213-1447760 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 27 |
| Conread position: | 10-576 |
| Cow position: | chr24:16649662-16649113 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 13-576 |
| Cow position: | chr24:33932996-33933570 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 100 |
| Conread position: | 19-574 |
| Cow position: | chr24:12798114-12797566 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 20-576 |
| Cow position: | chr24:6351829-6352389 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 88 |
| Conread position: | 23-206 |
| Cow position: | chr24:17314670-17314483 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 31-576 |
| Cow position: | chr24:13187846-13188389 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 77 |
| Conread position: | 35-536 |
| Cow position: | chr24:7060764-7061264 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 7 |
| Conread position: | 36-574 |
| Cow position: | chr24:36707517-36708048 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 62 |
| Conread position: | 37-206 |
| Cow position: | chr24:148934-148762 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 109, 64 |
| Conread position: | 37-229 |
| Cow position: | chr24:7712634-7712445 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 37-236 |
| Cow position: | chr24:29186463-29186666 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-286 |
| Cow position: | chr24:20267875-20268130 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-293 |
| Cow position: | chr24:5993313-5993058 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 70, 111 |
| Conread position: | 37-411 |
| Cow position: | chr24:13021329-13021705 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-497 |
| Cow position: | chr24:13181679-13181227 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 37-528 |
| Cow position: | chr24:6645075-6645569 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 71 |
| Conread position: | 37-567 |
| Cow position: | chr24:14391064-14390540 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 67 |
| Conread position: | 37-575 |
| Cow position: | chr24:6335355-6335893 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 63 |
| Conread position: | 37-575 |
| Cow position: | chr24:6537228-6537744 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 20 |
| Conread position: | 37-576 |
| Cow position: | chr24:6025439-6024892 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-576 |
| Cow position: | chr24:6433895-6434444 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 71 |
| Conread position: | 37-576 |
| Cow position: | chr24:9189073-9188527 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 71 |
| Conread position: | 37-576 |
| Cow position: | chr24:14384952-14384411 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 71 |
| Conread position: | 37-576 |
| Cow position: | chr24:19833041-19833589 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-576 |
| Cow position: | chr24:22792834-22793376 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-576 |
| Cow position: | chr24:44017203-44017750 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 42-549 |
| Cow position: | chr24:36296837-36297345 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 343 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 133, 63 |
| Conread position: | 43-575 |
| Cow position: | chr24:12114367-12113843 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 61 |
| Conread position: | 43-576 |
| Cow position: | chr24:6083680-6084221 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 65 |
| Conread position: | 43-576 |
| Cow position: | chr24:12085863-12086402 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 62 |
| Conread position: | 43-576 |
| Cow position: | chr24:33739679-33739133 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 65 |
| Conread position: | 48-576 |
| Cow position: | chr24:12485649-12485113 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 62 |
| Conread position: | 49-576 |
| Cow position: | chr24:35838957-35838412 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 41 |
| Conread position: | 57-576 |
| Cow position: | chr24:36560394-36559883 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 47 |
| Conread position: | 58-295 |
| Cow position: | chr24:37301395-37301159 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 149, 46 |
| Conread position: | 63-516 |
| Cow position: | chr24:2635801-2636260 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 337 |
| Conread position: | 66-478 |
| Cow position: | chr24:13531848-13531432 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 68-574 |
| Cow position: | chr24:14873655-14873148 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 72-566 |
| Cow position: | chr24:12567948-12568428 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 341 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 148-576 |
| Cow position: | chr24:8029923-8030355 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 246 |
| Conread position: | 151-576 |
| Cow position: | chr24:16084886-16084456 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 244 |
| Conread position: | 201-542 |
| Cow position: | chr24:17303770-17303443 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 210-576 |
| Cow position: | chr24:14584929-14585280 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 218-455 |
| Cow position: | chr24:584364-584124 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 156 |
| Conread position: | 230-576 |
| Cow position: | chr24:9092419-9092078 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 166 |
| Conread position: | 242-576 |
| Cow position: | chr24:40548744-40549078 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 144 |
| Conread position: | 287-503 |
| Cow position: | chr24:35987430-35987228 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 289-575 |
| Cow position: | chr24:37216920-37217203 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 94 |
| Conread position: | 300-527 |
| Cow position: | chr24:14333027-14333252 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 11, 84 |
| Conread position: | 319-576 |
| Cow position: | chr24:6660662-6660405 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 196, 64 |
Show alignments to all cow chromosomes.