Cow genome map
| Conread name: | Lym2-sn78_G06.f |
| Conread position: | 1-287 |
| Cow position: | chr28:26007613-26007901 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 142, 31 |
| Conread position: | 1-576 |
| Cow position: | chr28:5812290-5812854 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 47 |
| Conread position: | 4-199 |
| Cow position: | chr28:2990378-2990184 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 78 |
| Conread position: | 4-199 |
| Cow position: | chr28:5752576-5752378 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 139, 13 |
| Conread position: | 4-212 |
| Cow position: | chr28:7790649-7790444 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 126, 26 |
| Conread position: | 4-347 |
| Cow position: | chr28:13522309-13522660 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 4-356 |
| Cow position: | chr28:3774260-3773895 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 4-384 |
| Cow position: | chr28:5796406-5796785 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 103 |
| Conread position: | 4-445 |
| Cow position: | chr28:22827640-22828077 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 112 |
| Conread position: | 4-574 |
| Cow position: | chr28:26426685-26426117 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 80 |
| Conread position: | 4-575 |
| Cow position: | chr28:21358605-21359163 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 12 |
| Conread position: | 4-576 |
| Cow position: | chr28:7816830-7817366 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 26 |
| Conread position: | 4-576 |
| Cow position: | chr28:8721860-8721285 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 22 |
| Conread position: | 4-576 |
| Cow position: | chr28:10582405-10581824 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 103 |
| Conread position: | 4-576 |
| Cow position: | chr28:10619520-10618952 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 111 |
| Conread position: | 4-576 |
| Cow position: | chr28:12149905-12150473 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 4-576 |
| Cow position: | chr28:34648523-34649105 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 8-576 |
| Cow position: | chr28:9155693-9155117 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 84 |
| Conread position: | 9-274 |
| Cow position: | chr28:18181763-18181500 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 98 |
| Conread position: | 9-576 |
| Cow position: | chr28:18102322-18101781 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 367 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 87 |
| Conread position: | 10-183 |
| Cow position: | chr28:24667202-24667380 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 12-340 |
| Cow position: | chr28:18089411-18089078 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 142, 94 |
| Conread position: | 13-559 |
| Cow position: | chr28:1387801-1387249 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 17-576 |
| Cow position: | chr28:2591516-2592077 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 19-576 |
| Cow position: | chr28:21325391-21325953 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 21-512 |
| Cow position: | chr28:34324430-34324909 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 35 |
| Conread position: | 37-193 |
| Cow position: | chr28:15035800-15035640 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 132, 65 |
| Conread position: | 37-194 |
| Cow position: | chr28:1504257-1504418 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 109, 61 |
| Conread position: | 37-199 |
| Cow position: | chr28:7739870-7740037 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 106, 65 |
| Conread position: | 37-202 |
| Cow position: | chr28:33251960-33252129 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 106, 64 |
| Conread position: | 37-213 |
| Cow position: | chr28:489106-489286 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-408 |
| Cow position: | chr28:34593459-34593832 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-441 |
| Cow position: | chr28:29819186-29819594 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 68 |
| Conread position: | 37-558 |
| Cow position: | chr28:5565477-5566007 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-571 |
| Cow position: | chr28:14750164-14750705 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-574 |
| Cow position: | chr28:6780711-6780173 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 65 |
| Conread position: | 37-574 |
| Cow position: | chr28:15585013-15585542 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 342 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 106, 67 |
| Conread position: | 37-576 |
| Cow position: | chr28:2083220-2083759 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-576 |
| Cow position: | chr28:3193159-3192629 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 65 |
| Conread position: | 37-576 |
| Cow position: | chr28:8378182-8378731 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 69 |
| Conread position: | 37-576 |
| Cow position: | chr28:13441261-13440714 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-576 |
| Cow position: | chr28:13459590-13460132 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-576 |
| Cow position: | chr28:14706055-14705508 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-576 |
| Cow position: | chr28:15920843-15920303 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 71 |
| Conread position: | 37-576 |
| Cow position: | chr28:15950597-15951142 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-576 |
| Cow position: | chr28:17388097-17388644 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 68 |
| Conread position: | 37-576 |
| Cow position: | chr28:17667896-17667351 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-576 |
| Cow position: | chr28:18520845-18520301 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 69 |
| Conread position: | 37-576 |
| Cow position: | chr28:32792763-32792217 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 40-408 |
| Cow position: | chr28:1168545-1168174 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 64 |
| Conread position: | 40-576 |
| Cow position: | chr28:22261532-22260988 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 64 |
| Conread position: | 48-576 |
| Cow position: | chr28:782025-782557 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 58 |
| Conread position: | 49-466 |
| Cow position: | chr28:15681521-15681937 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 55 |
| Conread position: | 49-575 |
| Cow position: | chr28:9953763-9954294 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 59 |
| Conread position: | 54-469 |
| Cow position: | chr28:17330899-17330473 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 50 |
| Conread position: | 57-514 |
| Cow position: | chr28:32331762-32331308 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 45 |
| Conread position: | 66-576 |
| Cow position: | chr28:1815222-1814705 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 40 |
| Conread position: | 67-576 |
| Cow position: | chr28:1952788-1953292 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 41 |
| Conread position: | 67-576 |
| Cow position: | chr28:7901005-7901517 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 37 |
| Conread position: | 71-576 |
| Cow position: | chr28:7821915-7822420 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 37 |
| Conread position: | 79-265 |
| Cow position: | chr28:5115422-5115233 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 82-576 |
| Cow position: | chr28:7001651-7002152 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 83-576 |
| Cow position: | chr28:24587098-24587597 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 66 |
| Conread position: | 87-321 |
| Cow position: | chr28:14491131-14491365 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 123-576 |
| Cow position: | chr28:4381108-4380682 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 54 |
| Conread position: | 173-354 |
| Cow position: | chr28:2846738-2846559 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 178-576 |
| Cow position: | chr28:1504616-1505014 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 152 |
| Conread position: | 188-466 |
| Cow position: | chr28:24652062-24652338 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 189-405 |
| Cow position: | chr28:5752105-5751886 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 59, 198 |
| Conread position: | 189-573 |
| Cow position: | chr28:15378220-15377832 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 205 |
| Conread position: | 190-432 |
| Cow position: | chr28:2989909-2989672 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 98, 105 |
| Conread position: | 214-575 |
| Cow position: | chr28:24667378-24667741 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 154 |
| Conread position: | 218-372 |
| Cow position: | chr28:12648938-12648782 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 154 |
| Conread position: | 253-528 |
| Cow position: | chr28:6657470-6657191 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 271-441 |
| Cow position: | chr28:15035640-15035471 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 291-576 |
| Cow position: | chr28:9137172-9136888 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 52 |
| Conread position: | 312-576 |
| Cow position: | chr28:2724993-2724728 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 204, 79 |
Show alignments to all cow chromosomes.