Cow genome map
| Conread name: | Lym2-sn78_G06.f |
| Conread position: | 4-315 |
| Cow position: | chr29:32890750-32891078 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-336 |
| Cow position: | chr29:6470987-6471307 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 93, 28 |
| Conread position: | 4-441 |
| Cow position: | chr29:32640332-32640770 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 30 |
| Conread position: | 4-450 |
| Cow position: | chr29:803787-803324 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 310 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 4-575 |
| Cow position: | chr29:30811093-30811656 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 4-576 |
| Cow position: | chr29:104127-104695 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 108 |
| Conread position: | 8-528 |
| Cow position: | chr29:10848548-10848028 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 32 |
| Conread position: | 8-575 |
| Cow position: | chr29:15950624-15950064 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 97 |
| Conread position: | 8-576 |
| Cow position: | chr29:35196243-35196795 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 32 |
| Conread position: | 9-256 |
| Cow position: | chr29:34752133-34751890 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 10-156 |
| Cow position: | chr29:8663829-8663977 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 12-334 |
| Cow position: | chr29:9644164-9643838 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 94 |
| Conread position: | 12-574 |
| Cow position: | chr29:14013031-14013590 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 22 |
| Conread position: | 18-575 |
| Cow position: | chr29:21543808-21543242 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 31 |
| Conread position: | 18-576 |
| Cow position: | chr29:11048842-11049406 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 18-576 |
| Cow position: | chr29:16769700-16770251 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 28 |
| Conread position: | 18-576 |
| Cow position: | chr29:27041196-27040641 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 27 |
| Conread position: | 19-576 |
| Cow position: | chr29:5957164-5957732 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 23-160 |
| Cow position: | chr29:21431776-21431637 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 23-563 |
| Cow position: | chr29:2750814-2750297 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 81 |
| Conread position: | 23-576 |
| Cow position: | chr29:45459289-45459841 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 14 |
| Conread position: | 24-321 |
| Cow position: | chr29:2468369-2468057 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 144, 11 |
| Conread position: | 36-376 |
| Cow position: | chr29:9855324-9854993 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 34 |
| Conread position: | 36-576 |
| Cow position: | chr29:4635380-4634848 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 66 |
| Conread position: | 36-576 |
| Cow position: | chr29:43366410-43365864 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 37-261 |
| Cow position: | chr29:14368528-14368757 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 37-386 |
| Cow position: | chr29:13578009-13578356 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 73 |
| Conread position: | 37-428 |
| Cow position: | chr29:31121390-31121784 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-551 |
| Cow position: | chr29:27250751-27250230 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-560 |
| Cow position: | chr29:28061084-28060552 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 81 |
| Conread position: | 37-573 |
| Cow position: | chr29:15895264-15894725 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 20 |
| Conread position: | 37-574 |
| Cow position: | chr29:10824374-10823843 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 66 |
| Conread position: | 37-574 |
| Cow position: | chr29:19623662-19623121 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 68 |
| Conread position: | 37-575 |
| Cow position: | chr29:25932962-25932417 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 68 |
| Conread position: | 37-575 |
| Cow position: | chr29:34800220-34799681 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 68 |
| Conread position: | 37-576 |
| Cow position: | chr29:611031-610484 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 68 |
| Conread position: | 37-576 |
| Cow position: | chr29:2841783-2841245 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-576 |
| Cow position: | chr29:6266910-6266373 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-576 |
| Cow position: | chr29:7431634-7431087 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-576 |
| Cow position: | chr29:10648663-10648123 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-576 |
| Cow position: | chr29:15969559-15969023 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 73 |
| Conread position: | 37-576 |
| Cow position: | chr29:16109310-16109855 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-576 |
| Cow position: | chr29:20250741-20251288 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-576 |
| Cow position: | chr29:23975415-23975968 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-576 |
| Cow position: | chr29:26165237-26164694 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 47 |
| Conread position: | 37-576 |
| Cow position: | chr29:32539393-32539938 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 67 |
| Conread position: | 37-576 |
| Cow position: | chr29:35296480-35297002 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 71 |
| Conread position: | 37-576 |
| Cow position: | chr29:38226577-38227108 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-576 |
| Cow position: | chr29:39080124-39079584 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-576 |
| Cow position: | chr29:40503397-40502852 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 68 |
| Conread position: | 37-576 |
| Cow position: | chr29:43322141-43322688 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 40-552 |
| Cow position: | chr29:21246153-21246674 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 66 |
| Conread position: | 40-576 |
| Cow position: | chr29:48891-48350 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 66 |
| Conread position: | 43-321 |
| Cow position: | chr29:45587710-45587422 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 104, 61 |
| Conread position: | 43-576 |
| Cow position: | chr29:19652696-19653236 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 62 |
| Conread position: | 44-576 |
| Cow position: | chr29:2099435-2099973 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 44-576 |
| Cow position: | chr29:32315631-32316169 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 66 |
| Conread position: | 45-567 |
| Cow position: | chr29:24199006-24198504 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 349 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 45-576 |
| Cow position: | chr29:16022134-16022658 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 61 |
| Conread position: | 49-422 |
| Cow position: | chr29:12796869-12796501 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 41 |
| Conread position: | 55-576 |
| Cow position: | chr29:7840398-7840925 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 53 |
| Conread position: | 64-576 |
| Cow position: | chr29:2689515-2690030 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 120-504 |
| Cow position: | chr29:2368221-2367855 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 150-544 |
| Cow position: | chr29:39313889-39313495 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 257 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 99, 8 |
| Conread position: | 151-544 |
| Cow position: | chr29:21427355-21426962 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 243 |
| Conread position: | 151-574 |
| Cow position: | chr29:13853320-13852898 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 64 |
| Conread position: | 155-461 |
| Cow position: | chr29:34609241-34608946 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 72 |
| Conread position: | 158-536 |
| Cow position: | chr29:31180830-31181212 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 236 |
| Conread position: | 184-321 |
| Cow position: | chr29:42650059-42650196 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 104, 63 |
| Conread position: | 184-321 |
| Cow position: | chr29:42801919-42802056 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 104, 63 |
| Conread position: | 191-576 |
| Cow position: | chr29:17662661-17663032 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 197 |
| Conread position: | 204-576 |
| Cow position: | chr29:19884823-19885198 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 189 |
| Conread position: | 228-561 |
| Cow position: | chr29:11855376-11855708 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 244-576 |
| Cow position: | chr29:27981119-27980789 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 25 |
| Conread position: | 293-528 |
| Cow position: | chr29:5983335-5983100 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 50 |
| Conread position: | 301-468 |
| Cow position: | chr29:43791033-43791198 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 319-576 |
| Cow position: | chr29:670186-669929 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 197, 72 |
| Conread position: | 369-576 |
| Cow position: | chr29:2466416-2466206 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 147, 23 |
Show alignments to all cow chromosomes.