Cow genome map
| Conread name: | Lym2-sn78_G06.f |
| Conread position: | 1-428 |
| Cow position: | chr4:10408052-10408482 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 68 |
| Conread position: | 3-243 |
| Cow position: | chr4:57978689-57978931 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 166, 33 |
| Conread position: | 3-576 |
| Cow position: | chr4:11394059-11393495 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 4-363 |
| Cow position: | chr4:6449619-6449254 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 36, 165 |
| Conread position: | 4-372 |
| Cow position: | chr4:54955237-54955616 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 30, 105 |
| Conread position: | 4-482 |
| Cow position: | chr4:51044614-51044142 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 331 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 4-574 |
| Cow position: | chr4:1464650-1464076 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 4-576 |
| Cow position: | chr4:13491846-13492427 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 4-576 |
| Cow position: | chr4:48025670-48026248 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 103 |
| Conread position: | 5-576 |
| Cow position: | chr4:528260-528844 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 108 |
| Conread position: | 5-576 |
| Cow position: | chr4:8598862-8598306 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 102 |
| Conread position: | 8-575 |
| Cow position: | chr4:47718312-47717756 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 32 |
| Conread position: | 8-576 |
| Cow position: | chr4:66925285-66925850 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 32 |
| Conread position: | 9-576 |
| Cow position: | chr4:3829768-3830326 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 9-576 |
| Cow position: | chr4:28830314-28830880 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 10-349 |
| Cow position: | chr4:60673181-60673521 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 134 |
| Conread position: | 10-378 |
| Cow position: | chr4:58883393-58883030 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 10-576 |
| Cow position: | chr4:39272648-39272085 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 98 |
| Conread position: | 12-238 |
| Cow position: | chr4:30282974-30283201 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 131, 93 |
| Conread position: | 12-323 |
| Cow position: | chr4:21358942-21359243 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 13-341 |
| Cow position: | chr4:9311513-9311852 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 101 |
| Conread position: | 13-349 |
| Cow position: | chr4:60630961-60630632 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 76, 22 |
| Conread position: | 16-406 |
| Cow position: | chr4:54190155-54190534 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 19-259 |
| Cow position: | chr4:64982713-64982950 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 36-576 |
| Cow position: | chr4:29532411-29531864 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 65 |
| Conread position: | 37-243 |
| Cow position: | chr4:3358028-3358239 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 68 |
| Conread position: | 37-246 |
| Cow position: | chr4:41118431-41118646 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 132, 69 |
| Conread position: | 37-246 |
| Cow position: | chr4:41954099-41954311 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 109, 71 |
| Conread position: | 37-260 |
| Cow position: | chr4:33074080-33073854 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-286 |
| Cow position: | chr4:46713028-46712782 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 211, 67 |
| Conread position: | 37-427 |
| Cow position: | chr4:23114872-23114476 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 37-465 |
| Cow position: | chr4:1050316-1049881 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-486 |
| Cow position: | chr4:11383735-11384163 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 308 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 224, 71 |
| Conread position: | 37-546 |
| Cow position: | chr4:31668621-31669129 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 69 |
| Conread position: | 37-567 |
| Cow position: | chr4:3125085-3125620 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-574 |
| Cow position: | chr4:101624-101084 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 37-574 |
| Cow position: | chr4:157832-158364 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 71 |
| Conread position: | 37-574 |
| Cow position: | chr4:34185547-34185022 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 65 |
| Conread position: | 37-575 |
| Cow position: | chr4:21338675-21338153 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 42 |
| Conread position: | 37-576 |
| Cow position: | chr4:355219-355761 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 68 |
| Conread position: | 37-576 |
| Cow position: | chr4:602301-602844 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-576 |
| Cow position: | chr4:1931316-1930773 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 37-576 |
| Cow position: | chr4:3960900-3961442 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 67 |
| Conread position: | 37-576 |
| Cow position: | chr4:4905459-4905997 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 64 |
| Conread position: | 37-576 |
| Cow position: | chr4:5879490-5880016 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 53 |
| Conread position: | 37-576 |
| Cow position: | chr4:6269317-6268777 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 71 |
| Conread position: | 37-576 |
| Cow position: | chr4:6491042-6490514 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 37-576 |
| Cow position: | chr4:18516200-18516747 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 67 |
| Conread position: | 37-576 |
| Cow position: | chr4:24445895-24445350 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 65 |
| Conread position: | 37-576 |
| Cow position: | chr4:25600296-25599768 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 65 |
| Conread position: | 37-576 |
| Cow position: | chr4:36895678-36896220 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-576 |
| Cow position: | chr4:41330744-41331288 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 69 |
| Conread position: | 37-576 |
| Cow position: | chr4:43320332-43319795 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 68 |
| Conread position: | 37-576 |
| Cow position: | chr4:44724387-44724934 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-576 |
| Cow position: | chr4:45049991-45049447 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 37-576 |
| Cow position: | chr4:47764866-47764319 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 71 |
| Conread position: | 37-576 |
| Cow position: | chr4:65224230-65223683 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 40-576 |
| Cow position: | chr4:17926947-17926404 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 65 |
| Conread position: | 40-576 |
| Cow position: | chr4:33493118-33493659 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 64 |
| Conread position: | 43-558 |
| Cow position: | chr4:46663511-46664028 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 43-576 |
| Cow position: | chr4:12241910-12241367 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 59 |
| Conread position: | 43-576 |
| Cow position: | chr4:16055904-16056452 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 65 |
| Conread position: | 45-576 |
| Cow position: | chr4:30308123-30307608 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 46-316 |
| Cow position: | chr4:60265472-60265196 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 111, 28 |
| Conread position: | 48-549 |
| Cow position: | chr4:1371673-1371180 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 34 |
| Conread position: | 48-576 |
| Cow position: | chr4:43880425-43880959 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 56 |
| Conread position: | 49-260 |
| Cow position: | chr4:11617754-11617975 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 53 |
| Conread position: | 49-569 |
| Cow position: | chr4:40824931-40824410 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 53-576 |
| Cow position: | chr4:16359213-16359734 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 48 |
| Conread position: | 57-574 |
| Cow position: | chr4:4175771-4176278 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 341 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 57-576 |
| Cow position: | chr4:13547351-13547880 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 61-576 |
| Cow position: | chr4:32211493-32212018 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 340 |
| Conread position: | 67-392 |
| Cow position: | chr4:27442433-27442756 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 184, 29 |
| Conread position: | 72-570 |
| Cow position: | chr4:1497414-1496914 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 151-576 |
| Cow position: | chr4:18425094-18424674 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 13 |
| Conread position: | 164-576 |
| Cow position: | chr4:66179550-66179137 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 9 |
| Conread position: | 190-447 |
| Cow position: | chr4:12608040-12607787 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 81, 18 |
| Conread position: | 201-558 |
| Cow position: | chr4:27332926-27333277 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 210-381 |
| Cow position: | chr4:33630530-33630703 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 141 |
| Conread position: | 302-576 |
| Cow position: | chr4:41119590-41119864 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 303-574 |
| Cow position: | chr4:60264983-60264719 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 213, 26 |
| Conread position: | 345-576 |
| Cow position: | chr4:23493365-23493587 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 15 |
Show alignments to all cow chromosomes.