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Cow genome map

           
Conread name:
           
Lym2-sn78_G06.f
        

               
Conread position:
               
1-567
               

               
Cow position:
               
chrX:2142647-2143192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chrX:20698930-20698374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 114
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chrX:21270833-21270274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 106
               

               
Conread position:
               
3-576
               

               
Cow position:
               
chrX:37848350-37848936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 113
               

               
Conread position:
               
4-415
               

               
Cow position:
               
chrX:24139640-24139233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 107
               

               
Conread position:
               
4-458
               

               
Cow position:
               
chrX:28549246-28549690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 94
               

               
Conread position:
               
4-567
               

               
Cow position:
               
chrX:22131353-22130793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 105
               

               
Conread position:
               
4-573
               

               
Cow position:
               
chrX:21828871-21829443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 30
               

               
Conread position:
               
4-574
               

               
Cow position:
               
chrX:16017782-16017222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 102
               

               
Conread position:
               
4-575
               

               
Cow position:
               
chrX:11669087-11668521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 26
               

               
Conread position:
               
4-575
               

               
Cow position:
               
chrX:18532341-18532916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 103
               

               
Conread position:
               
4-576
               

               
Cow position:
               
chrX:30710692-30711277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 105
               

               
Conread position:
               
5-175
               

               
Cow position:
               
chrX:28553365-28553536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
5-574
               

               
Cow position:
               
chrX:29882903-29882310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
6-262
               

               
Cow position:
               
chrX:34987985-34988257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
9, 100
               

               
Conread position:
               
6-576
               

               
Cow position:
               
chrX:19185607-19185046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 106
               

               
Conread position:
               
7-530
               

               
Cow position:
               
chrX:37757133-37757649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chrX:6887011-6886749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
8-303
               

               
Cow position:
               
chrX:31192420-31192124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
25, 97
               

               
Conread position:
               
8-572
               

               
Cow position:
               
chrX:21290135-21289573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 32
               

               
Conread position:
               
9-417
               

               
Cow position:
               
chrX:28651768-28651366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
9-575
               

               
Cow position:
               
chrX:19927654-19928216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 100
               

               
Conread position:
               
9-576
               

               
Cow position:
               
chrX:5299852-5299301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
9-576
               

               
Cow position:
               
chrX:29794756-29794192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 95
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chrX:23041971-23041729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
10-576
               

               
Cow position:
               
chrX:12804507-12803942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 102
               

               
Conread position:
               
10-576
               

               
Cow position:
               
chrX:26401122-26400545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 102
               

               
Conread position:
               
10-576
               

               
Cow position:
               
chrX:27426973-27426394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
12-574
               

               
Cow position:
               
chrX:22813753-22814302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
12-574
               

               
Cow position:
               
chrX:30143033-30142475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
18-413
               

               
Cow position:
               
chrX:25332438-25332846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 31
               

               
Conread position:
               
18-568
               

               
Cow position:
               
chrX:17886021-17886574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
18-574
               

               
Cow position:
               
chrX:22777676-22778232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 24
               

               
Conread position:
               
18-574
               

               
Cow position:
               
chrX:24275026-24275590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
18-576
               

               
Cow position:
               
chrX:13007274-13006703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 31
               

               
Conread position:
               
18-576
               

               
Cow position:
               
chrX:20803493-20804048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
18-576
               

               
Cow position:
               
chrX:21602243-21602801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
18-576
               

               
Cow position:
               
chrX:21633226-21632665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
18-576
               

               
Cow position:
               
chrX:40057705-40057143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 87
               

               
Conread position:
               
19-254
               

               
Cow position:
               
chrX:29284090-29284333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
26, 86
               

               
Conread position:
               
20-576
               

               
Cow position:
               
chrX:31079889-31080442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 39
               

               
Conread position:
               
23-576
               

               
Cow position:
               
chrX:16236687-16237231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
36-566
               

               
Cow position:
               
chrX:2787838-2787317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
118, 72
               

               
Conread position:
               
36-576
               

               
Cow position:
               
chrX:21339777-21340322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 72
               

               
Conread position:
               
36-576
               

               
Cow position:
               
chrX:22893986-22893445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 72
               

               
Conread position:
               
36-576
               

               
Cow position:
               
chrX:23392227-23391677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 70
               

               
Conread position:
               
37-234
               

               
Cow position:
               
chrX:6577073-6577272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
107, 68
               

               
Conread position:
               
37-246
               

               
Cow position:
               
chrX:12704537-12704323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-263
               

               
Cow position:
               
chrX:16565250-16565480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-281
               

               
Cow position:
               
chrX:12672166-12671919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
107, 67
               

               
Conread position:
               
37-307
               

               
Cow position:
               
chrX:3376844-3376571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
37-313
               

               
Cow position:
               
chrX:22610686-22610967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-316
               

               
Cow position:
               
chrX:25187035-25187321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 69
               

               
Conread position:
               
37-316
               

               
Cow position:
               
chrX:29174221-29173939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-330
               

               
Cow position:
               
chrX:9172988-9172690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
107, 45
               

               
Conread position:
               
37-337
               

               
Cow position:
               
chrX:28506562-28506256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 24
               

               
Conread position:
               
37-355
               

               
Cow position:
               
chrX:21586412-21586735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 68
               

               
Conread position:
               
37-408
               

               
Cow position:
               
chrX:38145436-38145812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 67
               

               
Conread position:
               
37-413
               

               
Cow position:
               
chrX:20360555-20360176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 71
               

               
Conread position:
               
37-417
               

               
Cow position:
               
chrX:41151603-41151987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 71
               

               
Conread position:
               
37-425
               

               
Cow position:
               
chrX:23276495-23276887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
110, 67
               

               
Conread position:
               
37-462
               

               
Cow position:
               
chrX:30056052-30056473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 32
               

               
Conread position:
               
37-468
               

               
Cow position:
               
chrX:24325770-24325335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-475
               

               
Cow position:
               
chrX:24380683-24381130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
37-481
               

               
Cow position:
               
chrX:5337195-5336743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
37-486
               

               
Cow position:
               
chrX:8963673-8963230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 71
               

               
Conread position:
               
37-534
               

               
Cow position:
               
chrX:12341571-12342073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-567
               

               
Cow position:
               
chrX:12289559-12289028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 71
               

               
Conread position:
               
37-573
               

               
Cow position:
               
chrX:12655371-12654836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 71
               

               
Conread position:
               
37-574
               

               
Cow position:
               
chrX:6873697-6873151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-574
               

               
Cow position:
               
chrX:11465622-11465082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
37-574
               

               
Cow position:
               
chrX:30179609-30179075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 64
               

               
Conread position:
               
37-575
               

               
Cow position:
               
chrX:16275067-16275599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 71
               

               
Conread position:
               
37-575
               

               
Cow position:
               
chrX:23456195-23455657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 68
               

               
Conread position:
               
37-575
               

               
Cow position:
               
chrX:26767815-26767277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 67
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:970150-970689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 64
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:1546310-1546857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 68
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:2101243-2101781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:2860424-2859879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:3085523-3084980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:5284350-5283813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 73
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:5324333-5323801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:5862773-5863320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:7029565-7030110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:7092983-7093520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:7751282-7751822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:8479081-8479623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:8586470-8587016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:8669969-8670514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:9007719-9008260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 68
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:9193266-9192722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 45
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:12280880-12280347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:13077314-13076775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:13097888-13097349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:13398739-13398198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:13413740-13413194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 69
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:16363747-16363202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:16698677-16699222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 67
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:17479147-17478600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:17632451-17631902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:18218777-18219319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:18955139-18954600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 68
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:20316678-20316133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:21305139-21304604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 73
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:21489610-21490151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 67
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:22487564-22488103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 68
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:22526226-22525682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:22619938-22619387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:24485038-24484490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 51
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:26527351-26527898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 69
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:28635038-28634494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:28759244-28758719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 71
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:29951189-29950651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 20
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:30232728-30232186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 67
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:30666563-30666017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:31187858-31187323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:32095579-32095044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 213
               

               
Conread position:
               
37-576
               

               
Cow position:
               
chrX:39521282-39521829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
38-576
               

               
Cow position:
               
chrX:2603425-2603971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 52
               

               
Conread position:
               
38-576
               

               
Cow position:
               
chrX:5395586-5395040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 70
               

               
Conread position:
               
39-571
               

               
Cow position:
               
chrX:36646275-36646800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
103, 66
               

               
Conread position:
               
40-576
               

               
Cow position:
               
chrX:15127865-15127320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 67
               

               
Conread position:
               
40-576
               

               
Cow position:
               
chrX:15598308-15598852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 64
               

               
Conread position:
               
40-576
               

               
Cow position:
               
chrX:32466632-32467174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 212
               

               
Conread position:
               
42-567
               

               
Cow position:
               
chrX:17615012-17614500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
43-341
               

               
Cow position:
               
chrX:30145827-30145518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 61
               

               
Conread position:
               
43-367
               

               
Cow position:
               
chrX:19189758-19190076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 62
               

               
Conread position:
               
43-381
               

               
Cow position:
               
chrX:28522316-28521971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
43-567
               

               
Cow position:
               
chrX:27990395-27989874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 59
               

               
Conread position:
               
43-576
               

               
Cow position:
               
chrX:8454140-8454674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 39
               

               
Conread position:
               
43-576
               

               
Cow position:
               
chrX:15180055-15179509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 70
               

               
Conread position:
               
44-506
               

               
Cow position:
               
chrX:3422057-3421591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
45-576
               

               
Cow position:
               
chrX:6016064-6015540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 59
               

               
Conread position:
               
45-576
               

               
Cow position:
               
chrX:17668902-17668368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 59
               

               
Conread position:
               
45-576
               

               
Cow position:
               
chrX:24088786-24089324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
45-576
               

               
Cow position:
               
chrX:30174276-30173748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 63
               

               
Conread position:
               
48-537
               

               
Cow position:
               
chrX:4795311-4795810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 60
               

               
Conread position:
               
48-576
               

               
Cow position:
               
chrX:26759204-26758683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
48-576
               

               
Cow position:
               
chrX:29854177-29853644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 56
               

               
Conread position:
               
49-356
               

               
Cow position:
               
chrX:26628927-26628619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 59
               

               
Conread position:
               
49-475
               

               
Cow position:
               
chrX:39717186-39717617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 61
               

               
Conread position:
               
49-576
               

               
Cow position:
               
chrX:24122530-24121998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 55
               

               
Conread position:
               
49-576
               

               
Cow position:
               
chrX:24137007-24136477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 55
               

               
Conread position:
               
52-573
               

               
Cow position:
               
chrX:23046537-23047065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 58
               

               
Conread position:
               
52-576
               

               
Cow position:
               
chrX:35017221-35017730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 27
               

               
Conread position:
               
55-576
               

               
Cow position:
               
chrX:20796003-20796527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 58
               

               
Conread position:
               
58-327
               

               
Cow position:
               
chrX:11534883-11535153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
58-430
               

               
Cow position:
               
chrX:5834764-5834396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
58-567
               

               
Cow position:
               
chrX:12478122-12478631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
61-352
               

               
Cow position:
               
chrX:12182598-12182897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 43
               

               
Conread position:
               
63-566
               

               
Cow position:
               
chrX:30369571-30369104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
66-472
               

               
Cow position:
               
chrX:30046710-30046300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 38
               

               
Conread position:
               
66-475
               

               
Cow position:
               
chrX:29092908-29093322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 325
               

               
Conread position:
               
67-573
               

               
Cow position:
               
chrX:2483234-2482719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
69-576
               

               
Cow position:
               
chrX:14787460-14786950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
72-576
               

               
Cow position:
               
chrX:21222341-21222850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
75-576
               

               
Cow position:
               
chrX:1833252-1833750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 33
               

               
Conread position:
               
76-542
               

               
Cow position:
               
chrX:34343978-34344441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
79-576
               

               
Cow position:
               
chrX:23018749-23019247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
82-576
               

               
Cow position:
               
chrX:6909911-6909411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
83-576
               

               
Cow position:
               
chrX:30184467-30183972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 144
               

               
Conread position:
               
97-576
               

               
Cow position:
               
chrX:10532123-10531636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
98-566
               

               
Cow position:
               
chrX:25564954-25564469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
107-489
               

               
Cow position:
               
chrX:13052116-13052497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 149
               

               
Conread position:
               
107-515
               

               
Cow position:
               
chrX:31198046-31198467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 299
               

               
Conread position:
               
113-567
               

               
Cow position:
               
chrX:27494155-27494621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 283
               

               
Conread position:
               
120-576
               

               
Cow position:
               
chrX:26504653-26505106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 104
               

               
Conread position:
               
136-516
               

               
Cow position:
               
chrX:6276112-6275733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 129
               

               
Conread position:
               
149-542
               

               
Cow position:
               
chrX:24481994-24481600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
99, 6
               

               
Conread position:
               
151-574
               

               
Cow position:
               
chrX:22583217-22582780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
151-576
               

               
Cow position:
               
chrX:7481100-7481525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 96
               

               
Conread position:
               
153-314
               

               
Cow position:
               
chrX:28604306-28604142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
155-305
               

               
Cow position:
               
chrX:982164-982317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
155-576
               

               
Cow position:
               
chrX:29873060-29872635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 96
               

               
Conread position:
               
157-576
               

               
Cow position:
               
chrX:319970-320390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 187
               

               
Conread position:
               
158-286
               

               
Cow position:
               
chrX:24276006-24275875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
163-576
               

               
Cow position:
               
chrX:2563352-2562935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 231
               

               
Conread position:
               
167-567
               

               
Cow position:
               
chrX:12998051-12997669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 178
               

               
Conread position:
               
170-368
               

               
Cow position:
               
chrX:28553587-28553781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
118, 75
               

               
Conread position:
               
188-526
               

               
Cow position:
               
chrX:35020516-35020857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 130
               

               
Conread position:
               
189-369
               

               
Cow position:
               
chrX:12973901-12973720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
189-575
               

               
Cow position:
               
chrX:28562679-28562293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 61
               

               
Conread position:
               
189-576
               

               
Cow position:
               
chrX:21794631-21795017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 178
               

               
Conread position:
               
198-576
               

               
Cow position:
               
chrX:18660232-18659860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
219-576
               

               
Cow position:
               
chrX:35529422-35529782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 174
               

               
Conread position:
               
229-576
               

               
Cow position:
               
chrX:5839911-5840254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
241-576
               

               
Cow position:
               
chrX:29285021-29285339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chrX:34988465-34988681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 104
               

               
Conread position:
               
242-461
               

               
Cow position:
               
chrX:16935968-16935752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
48, 8
               

               
Conread position:
               
247-576
               

               
Cow position:
               
chrX:2537180-2536858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 145
               

               
Conread position:
               
247-576
               

               
Cow position:
               
chrX:9124950-9125281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 145
               

               
Conread position:
               
268-576
               

               
Cow position:
               
chrX:41411410-41411099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 125
               

               
Conread position:
               
293-573
               

               
Cow position:
               
chrX:40247676-40247395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
82, 50
               

               
Conread position:
               
293-575
               

               
Cow position:
               
chrX:32468358-32468625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
209, 46
               

               
Conread position:
               
293-576
               

               
Cow position:
               
chrX:29947342-29947629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
295-576
               

               
Cow position:
               
chrX:39564289-39564009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 56
               

               
Conread position:
               
306-574
               

               
Cow position:
               
chrX:28603804-28603538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
210, 85
               

               
Conread position:
               
317-576
               

               
Cow position:
               
chrX:26628370-26628110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
199, 67
               

               
Conread position:
               
345-576
               

               
Cow position:
               
chrX:1943353-1943122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
347-576
               

               
Cow position:
               
chrX:21586859-21587087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 38
               

               
Conread position:
               
354-576
               

               
Cow position:
               
chrX:12973532-12973306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
359-575
               

               
Cow position:
               
chrX:31192105-31191882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
365-576
               

               
Cow position:
               
chrX:44386182-44386398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
153, 30
               

               
Conread position:
               
392-576
               

               
Cow position:
               
chrX:16461413-16461599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
399-576
               

               
Cow position:
               
chrX:38146048-38146227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
408-576
               

               
Cow position:
               
chrX:5834212-5834042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
67, 77
               

               
Conread position:
               
447-573
               

               
Cow position:
               
chrX:38576032-38575904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               
Show alignments to all cow chromosomes.