Cow genome map

Conread name: MPL-MPL384_11_C22

Conread position: 1-240
Cow position: chr12:19972770-19972531 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 36, 61

Conread position: 1-249
Cow position: chr12:40270871-40271128 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 37, 26

Conread position: 1-258
Cow position: chr12:9142880-9142628 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 63

Conread position: 1-289
Cow position: chr12:35368115-35367818 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 222
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 37, 63

Conread position: 1-306
Cow position: chr12:18116138-18115819 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-333
Cow position: chr12:41973037-41973383 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 253
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 65

Conread position: 1-336
Cow position: chr12:759135-758791 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr12:5713701-5713353 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 63

Conread position: 1-336
Cow position: chr12:6404049-6404401 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr12:10359432-10359082 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 62

Conread position: 1-336
Cow position: chr12:11101986-11101634 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr12:15719832-15720180 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr12:17982121-17981774 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 264
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 31, 50

Conread position: 1-336
Cow position: chr12:20317020-20317355 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 27

Conread position: 1-336
Cow position: chr12:21056979-21057327 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 37, 64

Conread position: 1-336
Cow position: chr12:22201943-22202295 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr12:27505912-27506263 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 63

Conread position: 1-336
Cow position: chr12:31260697-31261023 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr12:37697739-37698087 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 54

Conread position: 1-336
Cow position: chr12:40868071-40867719 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr12:41337491-41337846 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr12:43681742-43681391 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 63

Conread position: 1-337
Cow position: chr12:47415539-47415190 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-354
Cow position: chr12:10931821-10931450 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-356
Cow position: chr12:747722-747361 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 255
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 154, 62

Conread position: 1-357
Cow position: chr12:5800518-5800142 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 62

Conread position: 1-357
Cow position: chr12:22480855-22480487 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-357
Cow position: chr12:25260015-25260390 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 53

Conread position: 1-357
Cow position: chr12:27851916-27852288 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 19

Conread position: 1-361
Cow position: chr12:44766567-44766193 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 37, 63

Conread position: 1-363
Cow position: chr12:6186415-6186793 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 52

Conread position: 1-363
Cow position: chr12:8841302-8841702 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 64

Conread position: 1-363
Cow position: chr12:21075554-21075184 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-363
Cow position: chr12:31328592-31328973 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-363
Cow position: chr12:33297360-33296986 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 277
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 37, 64

Conread position: 1-363
Cow position: chr12:35311194-35311552 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 254
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 37, 63

Conread position: 1-363
Cow position: chr12:48416015-48416385 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 262
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 37, 63

Conread position: 2-335
Cow position: chr12:564996-564659 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 36, 62

Conread position: 2-336
Cow position: chr12:2967658-2967335 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 35, 62

Conread position: 2-336
Cow position: chr12:11582886-11582546 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 2-357
Cow position: chr12:25312977-25313351 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 62

Conread position: 2-360
Cow position: chr12:17663691-17663308 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 270
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 36, 70

Conread position: 2-363
Cow position: chr12:5273634-5274008 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 62

Conread position: 2-363
Cow position: chr12:5905261-5904888 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 52

Conread position: 2-363
Cow position: chr12:37562737-37562361 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 2-366
Cow position: chr12:9396816-9397195 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 243
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 128

Conread position: 2-366
Cow position: chr12:32849305-32848912 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 281
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 153, 38

Conread position: 3-336
Cow position: chr12:24028747-24029096 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 61

Conread position: 5-357
Cow position: chr12:25365301-25365660 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 236
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 32, 53

Conread position: 5-366
Cow position: chr12:28707891-28708270 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 59

Conread position: 8-366
Cow position: chr12:19868946-19868583 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 259
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 27, 56

Conread position: 9-336
Cow position: chr12:22286205-22286549 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 55

Conread position: 11-309
Cow position: chr12:7885150-7885455 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 232
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 27, 53

Conread position: 11-333
Cow position: chr12:39824725-39825053 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 219
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 26, 59

Conread position: 12-336
Cow position: chr12:1849387-1849728 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 250
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 27, 52

Conread position: 12-336
Cow position: chr12:40306997-40306660 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 52

Conread position: 13-335
Cow position: chr12:7651114-7651447 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 50

Conread position: 13-336
Cow position: chr12:8673723-8674065 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 51

Conread position: 13-336
Cow position: chr12:23475473-23475137 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 51

Conread position: 13-361
Cow position: chr12:21946707-21946346 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 52

Conread position: 16-336
Cow position: chr12:30142134-30141803 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 226
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 22, 49

Conread position: 17-336
Cow position: chr12:15821439-15821108 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 48

Conread position: 19-356
Cow position: chr12:45541083-45540757 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 45

Conread position: 37-363
Cow position: chr12:38774778-38774449 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 26

Conread position: 40-357
Cow position: chr12:25143057-25143366 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 214
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 116, 23

Conread position: 50-357
Cow position: chr12:24558258-24557938 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 241
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 106, 19

Conread position: 70-336
Cow position: chr12:1093569-1093286 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 86, 21

Conread position: 73-338
Cow position: chr12:6954968-6954700 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 121
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 137, 189

Conread position: 80-357
Cow position: chr12:32676305-32676594 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 34, 25

Conread position: 88-352
Cow position: chr12:8642394-8642119 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 196
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 33, 18

Conread position: 91-336
Cow position: chr12:19198665-19198420 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 67, 14

Conread position: 92-363
Cow position: chr12:15939233-15939522 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 64, 13

Conread position: 105-336
Cow position: chr12:12754530-12754771 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 189
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 38

Conread position: 115-364
Cow position: chr12:31533217-31533486 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 41, 28

Conread position: 120-336
Cow position: chr12:27994720-27994487 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 36, 23

Conread position: 130-330
Cow position: chr12:6491702-6491921 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 26, 13

Conread position: 143-336
Cow position: chr12:23039677-23039890 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 13, 99

Conread position: 143-336
Cow position: chr12:24755946-24756162 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 145-336
Cow position: chr12:40514716-40514503 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 148-336
Cow position: chr12:10988946-10988741 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 5

Conread position: 159-336
Cow position: chr12:20459140-20459336 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 177-365
Cow position: chr12:26869702-26869902 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 11, 18

Conread position: 195-311
Cow position: chr12:24658187-24658301 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 13, 58

Conread position: 195-336
Cow position: chr12:18586206-18586059 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 195-357
Cow position: chr12:28571905-28571739 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 13, 0

Conread position: 195-360
Cow position: chr12:6686469-6686294 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 195-361
Cow position: chr12:24206063-24205892 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 146

Conread position: 195-363
Cow position: chr12:17969497-17969325 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 15, 55

Conread position: 199-336
Cow position: chr12:14522904-14522763 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 235-363
Cow position: chr12:36568858-36568989 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 248-358
Cow position: chr12:3094148-3094256 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 87, 0

Show alignments to all cow chromosomes.