Cow genome map

Conread name: MPL-MPL384_11_C22

Conread position: 1-312
Cow position: chr17:4107451-4107777 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 245
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 155, 30

Conread position: 1-312
Cow position: chr17:4123187-4123510 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 243
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 155, 30

Conread position: 1-334
Cow position: chr17:17221910-17221579 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 233
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 36, 57

Conread position: 1-334
Cow position: chr17:17478735-17478387 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 237
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 37, 67

Conread position: 1-335
Cow position: chr17:36265664-36266009 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 64

Conread position: 1-336
Cow position: chr17:997564-997912 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 64

Conread position: 1-336
Cow position: chr17:2201913-2201561 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr17:3197020-3197366 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 64

Conread position: 1-336
Cow position: chr17:6072143-6071805 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 258
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr17:8223319-8222969 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 53

Conread position: 1-336
Cow position: chr17:11386070-11385720 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 64

Conread position: 1-336
Cow position: chr17:15374986-15374654 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 252
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr17:16446867-16447218 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 49

Conread position: 1-336
Cow position: chr17:18099461-18099810 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr17:18592016-18591677 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr17:18777220-18777565 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 62

Conread position: 1-336
Cow position: chr17:19998708-19998358 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 64

Conread position: 1-336
Cow position: chr17:21666615-21666263 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr17:22773842-22774199 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 260
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 46, 63

Conread position: 1-336
Cow position: chr17:29083780-29083432 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 65

Conread position: 1-336
Cow position: chr17:39485117-39484774 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 255
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 37, 23

Conread position: 1-354
Cow position: chr17:13725877-13725507 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 20

Conread position: 1-354
Cow position: chr17:24026369-24026740 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 64

Conread position: 1-354
Cow position: chr17:43992100-43991728 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 64

Conread position: 1-356
Cow position: chr17:29213238-29212873 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Conread position: 1-357
Cow position: chr17:8067651-8068005 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 238
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 37, 27

Conread position: 1-357
Cow position: chr17:11913135-11913509 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 63

Conread position: 1-357
Cow position: chr17:12477478-12477107 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 253
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 37, 59

Conread position: 1-357
Cow position: chr17:24293717-24293353 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 30

Conread position: 1-358
Cow position: chr17:28024275-28024646 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 63

Conread position: 1-358
Cow position: chr17:30413569-30413207 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 234
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 36, 63

Conread position: 1-358
Cow position: chr17:42258471-42258120 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 253
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 141, 61

Conread position: 1-362
Cow position: chr17:8450326-8449951 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 62

Conread position: 1-362
Cow position: chr17:16869690-16870062 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 30

Conread position: 1-362
Cow position: chr17:20091030-20091388 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 254
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 37, 66

Conread position: 1-363
Cow position: chr17:4211545-4211163 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 62

Conread position: 1-363
Cow position: chr17:10445769-10445398 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 67

Conread position: 1-363
Cow position: chr17:11083524-11083903 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-363
Cow position: chr17:16117865-16118231 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 35

Conread position: 1-363
Cow position: chr17:20078065-20078441 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 273
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 37, 65

Conread position: 1-363
Cow position: chr17:23884202-23884569 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 57

Conread position: 1-363
Cow position: chr17:29156994-29156607 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 282
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 37, 23

Conread position: 1-363
Cow position: chr17:29472046-29471671 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-363
Cow position: chr17:33792696-33792306 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 65

Conread position: 1-364
Cow position: chr17:16854492-16854866 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-364
Cow position: chr17:20093553-20093927 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 30

Conread position: 2-334
Cow position: chr17:18814761-18814422 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 61

Conread position: 2-336
Cow position: chr17:20209259-20209611 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 250
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 35, 62

Conread position: 2-357
Cow position: chr17:3306199-3305830 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 9

Conread position: 2-357
Cow position: chr17:5748245-5748601 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 258
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 36, 62

Conread position: 2-361
Cow position: chr17:2034107-2033728 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 2-361
Cow position: chr17:2081564-2081189 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 2-362
Cow position: chr17:923236-922858 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 2-362
Cow position: chr17:2270327-2269972 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 62

Conread position: 2-362
Cow position: chr17:20814933-20814570 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 251
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 157, 61

Conread position: 2-363
Cow position: chr17:1568604-1568986 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 92

Conread position: 2-363
Cow position: chr17:2839644-2839256 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 61

Conread position: 2-363
Cow position: chr17:6082111-6081723 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 59

Conread position: 2-363
Cow position: chr17:33934202-33934587 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 2-366
Cow position: chr17:16217042-16216660 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 275
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 62

Conread position: 2-370
Cow position: chr17:28539605-28539234 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 3-336
Cow position: chr17:13716692-13717030 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 153, 36

Conread position: 3-336
Cow position: chr17:22563753-22563408 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 61

Conread position: 3-336
Cow position: chr17:43826644-43826977 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 224
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 128, 61

Conread position: 3-357
Cow position: chr17:24618389-24618024 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 61

Conread position: 3-357
Cow position: chr17:36790672-36790311 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 252
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 37, 61

Conread position: 3-363
Cow position: chr17:24031411-24031033 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 270
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 35, 61

Conread position: 4-362
Cow position: chr17:18201337-18200957 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 60

Conread position: 5-336
Cow position: chr17:50502-50841 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 60

Conread position: 12-364
Cow position: chr17:41014765-41014393 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 52

Conread position: 13-357
Cow position: chr17:27978708-27978343 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 251
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 25, 67

Conread position: 13-360
Cow position: chr17:2079232-2078875 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 259
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 40, 14

Conread position: 13-362
Cow position: chr17:979582-979950 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 51

Conread position: 16-358
Cow position: chr17:7615089-7615441 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 251
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 22, 49

Conread position: 16-361
Cow position: chr17:10843873-10843506 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 256
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 21, 38

Conread position: 23-336
Cow position: chr17:5898982-5899297 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 237
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 80, 8

Conread position: 39-336
Cow position: chr17:14006985-14006678 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 115, 23

Conread position: 40-363
Cow position: chr17:13910051-13910383 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 245
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 14, 23

Conread position: 43-336
Cow position: chr17:254668-254357 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 76, 20

Conread position: 43-362
Cow position: chr17:18339903-18340240 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 20

Conread position: 73-336
Cow position: chr17:25739840-25739560 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 83, 18

Conread position: 77-334
Cow position: chr17:20033924-20033675 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 79, 14

Conread position: 80-364
Cow position: chr17:15334918-15335204 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 227
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 76, 11

Conread position: 91-336
Cow position: chr17:3315606-3315354 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 65, 11

Conread position: 105-363
Cow position: chr17:22134709-22134430 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 38

Conread position: 116-356
Cow position: chr17:25567701-25567440 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 203

Conread position: 195-336
Cow position: chr17:1672708-1672562 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 123

Conread position: 195-336
Cow position: chr17:4635379-4635519 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 15, 53

Conread position: 195-336
Cow position: chr17:19369852-19369707 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 121
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 13, 47

Conread position: 195-336
Cow position: chr17:38829290-38829144 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 195-352
Cow position: chr17:36159629-36159789 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 13, 23

Conread position: 195-362
Cow position: chr17:3781061-3780890 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 17, 33

Conread position: 195-363
Cow position: chr17:29041494-29041667 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 15, 144

Conread position: 198-363
Cow position: chr17:1883651-1883478 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 198-363
Cow position: chr17:38629533-38629363 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 12, 0

Conread position: 199-352
Cow position: chr17:13674095-13674244 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 118, 43

Conread position: 202-362
Cow position: chr17:20083032-20083189 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 19

Conread position: 217-363
Cow position: chr17:40802135-40801982 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 92

Conread position: 225-363
Cow position: chr17:31233046-31232904 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 239-363
Cow position: chr17:44482209-44482082 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 246-363
Cow position: chr17:21304642-21304523 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 92, 17

Show alignments to all cow chromosomes.