Cow genome map

Conread name: MPL-MPL384_11_C22

Conread position: 1-257
Cow position: chr23:19967152-19966885 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 36, 69

Conread position: 1-306
Cow position: chr23:7293917-7293603 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 1-326
Cow position: chr23:5721462-5721801 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 30

Conread position: 1-327
Cow position: chr23:26305903-26305564 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-334
Cow position: chr23:1545478-1545137 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-334
Cow position: chr23:29271627-29271284 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 242
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 37, 64

Conread position: 1-336
Cow position: chr23:1959865-1959513 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr23:2023351-2023698 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 16

Conread position: 1-336
Cow position: chr23:2472563-2472914 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 64

Conread position: 1-336
Cow position: chr23:2721455-2721108 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr23:2791037-2791387 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 45

Conread position: 1-336
Cow position: chr23:5623842-5624193 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr23:5870670-5871019 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr23:6441347-6441675 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 155, 48

Conread position: 1-336
Cow position: chr23:7374407-7374060 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr23:8291187-8290840 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 53

Conread position: 1-336
Cow position: chr23:8708129-8707777 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 62

Conread position: 1-336
Cow position: chr23:11376580-11376931 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 64

Conread position: 1-336
Cow position: chr23:11782524-11782172 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 66

Conread position: 1-336
Cow position: chr23:12864426-12864085 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 62

Conread position: 1-336
Cow position: chr23:14970218-14970568 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr23:15529323-15528973 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr23:16057429-16057083 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 246
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 37, 64

Conread position: 1-336
Cow position: chr23:19493591-19493235 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr23:26828981-26828635 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 64

Conread position: 1-336
Cow position: chr23:27402872-27402520 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr23:28222439-28222088 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr23:30210980-30211316 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 239
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 39, 69

Conread position: 1-336
Cow position: chr23:30633854-30634208 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 6

Conread position: 1-336
Cow position: chr23:39389784-39389455 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr23:40553403-40553736 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-353
Cow position: chr23:15505464-15505103 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 247
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 34, 55

Conread position: 1-354
Cow position: chr23:28916066-28915695 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-356
Cow position: chr23:35275968-35275594 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 245
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 36, 90

Conread position: 1-357
Cow position: chr23:6223552-6223179 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 59

Conread position: 1-357
Cow position: chr23:9393156-9393517 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 250
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 34, 40

Conread position: 1-357
Cow position: chr23:35937544-35937185 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 48

Conread position: 1-361
Cow position: chr23:30622762-30623143 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 69

Conread position: 1-362
Cow position: chr23:6593190-6593578 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 63

Conread position: 1-362
Cow position: chr23:14738645-14738262 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-362
Cow position: chr23:25358071-25357708 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-362
Cow position: chr23:26840909-26840526 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-363
Cow position: chr23:671908-671526 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-363
Cow position: chr23:6173282-6173664 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 63

Conread position: 1-363
Cow position: chr23:7360191-7359812 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 103

Conread position: 1-363
Cow position: chr23:20025674-20025290 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 62

Conread position: 1-363
Cow position: chr23:22170644-22170263 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 63

Conread position: 1-363
Cow position: chr23:26230852-26230486 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 269
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 37, 63

Conread position: 1-363
Cow position: chr23:30244217-30243844 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-363
Cow position: chr23:31833269-31833647 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 263
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 46, 63

Conread position: 1-363
Cow position: chr23:33233592-33233966 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 32, 63

Conread position: 1-363
Cow position: chr23:36308943-36308562 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 63

Conread position: 1-364
Cow position: chr23:25665085-25665447 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 63

Conread position: 1-364
Cow position: chr23:29946155-29946521 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 251
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 34, 61

Conread position: 2-335
Cow position: chr23:17000171-16999827 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 34

Conread position: 2-336
Cow position: chr23:1321662-1322010 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 63

Conread position: 2-336
Cow position: chr23:11344229-11343883 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 48

Conread position: 2-336
Cow position: chr23:23470462-23470109 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 254
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 36, 62

Conread position: 2-336
Cow position: chr23:24098863-24098514 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 62

Conread position: 2-336
Cow position: chr23:36027515-36027866 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 63

Conread position: 2-362
Cow position: chr23:4517263-4516889 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 2-362
Cow position: chr23:29446218-29446592 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 3-335
Cow position: chr23:11128747-11128405 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 58

Conread position: 3-336
Cow position: chr23:10014071-10013720 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 62

Conread position: 3-363
Cow position: chr23:29471576-29471953 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 47

Conread position: 5-357
Cow position: chr23:23192713-23193069 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 39

Conread position: 6-357
Cow position: chr23:12003793-12003443 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 234
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 32, 58

Conread position: 7-357
Cow position: chr23:29459549-29459891 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 251
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 31, 57

Conread position: 8-357
Cow position: chr23:11404955-11405322 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 56

Conread position: 8-357
Cow position: chr23:17404332-17403976 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 263
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 30, 58

Conread position: 12-336
Cow position: chr23:11079005-11078664 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 51

Conread position: 12-357
Cow position: chr23:17876171-17876516 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 246
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 31, 12

Conread position: 13-334
Cow position: chr23:12978464-12978142 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 51

Conread position: 13-340
Cow position: chr23:1398516-1398847 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 51

Conread position: 13-363
Cow position: chr23:16495553-16495920 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 28

Conread position: 16-336
Cow position: chr23:39812743-39812411 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 48

Conread position: 16-363
Cow position: chr23:40825506-40825155 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 48

Conread position: 23-363
Cow position: chr23:1310857-1311214 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 41

Conread position: 41-363
Cow position: chr23:40890471-40890132 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 251
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 115, 22

Conread position: 44-336
Cow position: chr23:3286451-3286145 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 54-364
Cow position: chr23:15038650-15038970 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 219
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 64, 9

Conread position: 66-352
Cow position: chr23:25554265-25553959 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 90, 39

Conread position: 78-336
Cow position: chr23:37198850-37199124 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 197
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 78, 13

Conread position: 80-336
Cow position: chr23:344810-345083 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 77, 11

Conread position: 80-336
Cow position: chr23:361983-362256 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 76, 11

Conread position: 80-363
Cow position: chr23:25670117-25670428 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 75, 11

Conread position: 105-359
Cow position: chr23:14839558-14839822 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 41, 52

Conread position: 117-363
Cow position: chr23:17522686-17522440 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 188
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 39, 26

Conread position: 143-363
Cow position: chr23:615819-616058 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 159-335
Cow position: chr23:14959378-14959570 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 159-336
Cow position: chr23:13519413-13519218 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 187-336
Cow position: chr23:25411959-25412114 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 194-336
Cow position: chr23:644608-644464 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 195-334
Cow position: chr23:5539603-5539747 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 195-336
Cow position: chr23:3709932-3709788 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 129

Conread position: 195-363
Cow position: chr23:29625508-29625335 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 33

Conread position: 196-361
Cow position: chr23:416453-416288 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 89

Conread position: 196-362
Cow position: chr23:2269846-2270016 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 12, 145

Conread position: 202-354
Cow position: chr23:28987868-28987707 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 0

Show alignments to all cow chromosomes.