Cow genome map

Conread name: MPL-MPL384_11_C22

Conread position: 1-239
Cow position: chr26:25208784-25208534 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 37, 63

Conread position: 1-283
Cow position: chr26:22247203-22246920 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 193
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 37, 62

Conread position: 1-334
Cow position: chr26:10966233-10966574 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-335
Cow position: chr26:7507124-7506773 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 67

Conread position: 1-336
Cow position: chr26:755599-755942 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 15

Conread position: 1-336
Cow position: chr26:798764-799112 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 45

Conread position: 1-336
Cow position: chr26:1621431-1621079 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 1-336
Cow position: chr26:4261443-4261807 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 246
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 36, 62

Conread position: 1-336
Cow position: chr26:6843438-6843788 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr26:9867585-9867912 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr26:17169606-17169262 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr26:21012896-21012549 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 245
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 33, 62

Conread position: 1-336
Cow position: chr26:22831255-22831606 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr26:23890187-23889842 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr26:30593856-30594197 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-352
Cow position: chr26:8307971-8308338 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 54

Conread position: 1-352
Cow position: chr26:21859366-21858997 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 263
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 54, 69

Conread position: 1-354
Cow position: chr26:5680323-5679943 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-354
Cow position: chr26:15559270-15558899 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 63

Conread position: 1-357
Cow position: chr26:12125791-12126161 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 265
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 37, 69

Conread position: 1-357
Cow position: chr26:15561428-15561788 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 36

Conread position: 1-357
Cow position: chr26:30652587-30652965 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 263
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 37, 115

Conread position: 1-358
Cow position: chr26:8746493-8746867 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 66

Conread position: 1-362
Cow position: chr26:23600251-23600622 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-363
Cow position: chr26:6030219-6030590 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 65

Conread position: 1-363
Cow position: chr26:8810636-8810260 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 55

Conread position: 1-363
Cow position: chr26:14173842-14173465 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-363
Cow position: chr26:20497324-20496932 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 268
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 199

Conread position: 1-363
Cow position: chr26:23591479-23591097 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 64

Conread position: 1-364
Cow position: chr26:3706345-3705967 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 37, 63

Conread position: 1-366
Cow position: chr26:8352499-8352138 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 277
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 37, 63

Conread position: 1-368
Cow position: chr26:18918536-18918920 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 270
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 37, 15

Conread position: 2-335
Cow position: chr26:14897871-14897521 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 63

Conread position: 2-335
Cow position: chr26:20256401-20256056 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 61

Conread position: 2-336
Cow position: chr26:35424280-35423929 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 62

Conread position: 2-351
Cow position: chr26:17288582-17288224 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 262
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 35, 63

Conread position: 2-357
Cow position: chr26:19791630-19791989 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 239
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 25

Conread position: 3-363
Cow position: chr26:25393567-25393189 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 61

Conread position: 4-357
Cow position: chr26:6475894-6476269 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 60

Conread position: 4-361
Cow position: chr26:12965100-12965463 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 60

Conread position: 4-364
Cow position: chr26:2770363-2770744 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 271
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 33, 19

Conread position: 6-357
Cow position: chr26:11370466-11370101 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 58

Conread position: 10-363
Cow position: chr26:24239470-24239101 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 54

Conread position: 12-352
Cow position: chr26:3755769-3755428 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 232
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 25, 51

Conread position: 12-363
Cow position: chr26:13556444-13556808 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 52

Conread position: 13-269
Cow position: chr26:8404945-8404677 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 51

Conread position: 13-336
Cow position: chr26:4323948-4324289 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 14

Conread position: 13-336
Cow position: chr26:21539165-21538825 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 51

Conread position: 21-363
Cow position: chr26:21351231-21350903 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 236
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 17, 45

Conread position: 25-329
Cow position: chr26:13976372-13976661 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 39

Conread position: 37-336
Cow position: chr26:20299302-20299569 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 26, 0

Conread position: 39-362
Cow position: chr26:6097827-6098161 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 24

Conread position: 43-363
Cow position: chr26:31138216-31138548 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 115, 20

Conread position: 45-336
Cow position: chr26:30569391-30569699 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 18

Conread position: 47-363
Cow position: chr26:14487528-14487859 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 16

Conread position: 49-362
Cow position: chr26:27986871-27987197 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 14

Conread position: 57-351
Cow position: chr26:15938104-15937794 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 102, 6

Conread position: 78-357
Cow position: chr26:13773750-13773459 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 76, 13

Conread position: 81-357
Cow position: chr26:10698810-10699103 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 75, 25

Conread position: 105-336
Cow position: chr26:15199691-15199459 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 51, 38

Conread position: 106-315
Cow position: chr26:20480901-20481112 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 50, 37

Conread position: 129-362
Cow position: chr26:16720135-16719882 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 27, 16

Conread position: 159-363
Cow position: chr26:11902970-11902748 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 184

Conread position: 195-335
Cow position: chr26:3556550-3556684 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 15, 46

Conread position: 195-336
Cow position: chr26:4599624-4599770 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 138

Conread position: 195-336
Cow position: chr26:34015417-34015269 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 195-357
Cow position: chr26:11269792-11269629 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 12, 93

Conread position: 195-362
Cow position: chr26:8653553-8653716 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 58

Conread position: 195-365
Cow position: chr26:11266280-11266108 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 30

Conread position: 196-357
Cow position: chr26:9836050-9835879 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 197-335
Cow position: chr26:18933768-18933910 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 202-335
Cow position: chr26:10490810-10490672 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 203-357
Cow position: chr26:2604356-2604517 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 206-361
Cow position: chr26:21823041-21823202 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 236-336
Cow position: chr26:1885541-1885442 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 7, 0

Show alignments to all cow chromosomes.