Cow genome map

Conread name: MPL-MPL384_11_C22

Conread position: 1-297
Cow position: chr27:8743364-8743670 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 63

Conread position: 1-304
Cow position: chr27:8429989-8429671 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 63

Conread position: 1-306
Cow position: chr27:26545493-26545176 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 53

Conread position: 1-331
Cow position: chr27:10324196-10324537 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 63

Conread position: 1-333
Cow position: chr27:16823238-16823578 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 26

Conread position: 1-334
Cow position: chr27:11481669-11481320 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 62

Conread position: 1-334
Cow position: chr27:13409735-13409384 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-335
Cow position: chr27:8201675-8201323 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-335
Cow position: chr27:12191011-12190661 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 30

Conread position: 1-336
Cow position: chr27:2332239-2331890 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr27:3652961-3653313 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr27:5423949-5423604 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 239
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 37, 14

Conread position: 1-336
Cow position: chr27:9333406-9333054 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr27:13182550-13182898 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr27:13354044-13353693 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr27:15033153-15033504 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr27:19423636-19423990 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 256
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 36, 64

Conread position: 1-336
Cow position: chr27:20811155-20810803 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 1-336
Cow position: chr27:22330227-22329881 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-336
Cow position: chr27:26785550-26785204 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-337
Cow position: chr27:13273291-13272953 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-338
Cow position: chr27:17476484-17476821 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-354
Cow position: chr27:24295521-24295894 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 63

Conread position: 1-357
Cow position: chr27:3751939-3751577 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 244
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 62

Conread position: 1-357
Cow position: chr27:27728755-27729128 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 262
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 37, 63

Conread position: 1-357
Cow position: chr27:28924617-28924249 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 36, 53

Conread position: 1-360
Cow position: chr27:25784025-25784400 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 63

Conread position: 1-361
Cow position: chr27:8262579-8262196 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 64

Conread position: 1-362
Cow position: chr27:19388458-19388830 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 33, 62

Conread position: 1-363
Cow position: chr27:4824535-4824181 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 256
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 63

Conread position: 1-363
Cow position: chr27:12277845-12277467 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 1-363
Cow position: chr27:21350583-21350204 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 271
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 37, 67

Conread position: 1-363
Cow position: chr27:28984505-28984124 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 2-249
Cow position: chr27:16787266-16787521 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 65

Conread position: 2-315
Cow position: chr27:26087655-26087966 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 33, 59

Conread position: 2-335
Cow position: chr27:29812039-29811692 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 63

Conread position: 2-355
Cow position: chr27:21283514-21283885 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 265
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 33, 62

Conread position: 2-357
Cow position: chr27:25112903-25112524 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 62

Conread position: 2-357
Cow position: chr27:27742946-27742579 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 62

Conread position: 2-361
Cow position: chr27:6620628-6620984 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 253
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 36, 10

Conread position: 2-363
Cow position: chr27:23454710-23454337 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 62

Conread position: 2-366
Cow position: chr27:1502231-1501872 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 64

Conread position: 3-336
Cow position: chr27:26856777-26856427 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 61

Conread position: 11-357
Cow position: chr27:9090358-9090002 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 275
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 27, 53

Conread position: 12-336
Cow position: chr27:5990324-5990658 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 25, 55

Conread position: 12-336
Cow position: chr27:30176785-30177127 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 53

Conread position: 12-349
Cow position: chr27:16337479-16337825 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 218
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 26, 51

Conread position: 12-363
Cow position: chr27:16331762-16332122 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 268
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 12

Conread position: 13-336
Cow position: chr27:2557267-2557606 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 51

Conread position: 15-330
Cow position: chr27:17564939-17565248 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 204
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 48

Conread position: 16-336
Cow position: chr27:9989157-9989492 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 48

Conread position: 25-334
Cow position: chr27:4331024-4331347 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 39

Conread position: 45-357
Cow position: chr27:4805475-4805153 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 204
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 111, 60

Conread position: 49-336
Cow position: chr27:12282372-12282077 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 107, 15

Conread position: 63-336
Cow position: chr27:8187509-8187223 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 205
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 93, 28

Conread position: 71-363
Cow position: chr27:11256017-11256329 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 230
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 15, 21

Conread position: 80-360
Cow position: chr27:11490280-11489982 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 10

Conread position: 88-358
Cow position: chr27:26653818-26654098 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 68, 17

Conread position: 91-352
Cow position: chr27:20765356-20765110 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 245, 14

Conread position: 97-362
Cow position: chr27:15866657-15866945 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 8

Conread position: 133-357
Cow position: chr27:15406228-15405984 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 187
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 10

Conread position: 144-357
Cow position: chr27:31249813-31249598 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 10, 53

Conread position: 153-363
Cow position: chr27:2682111-2681877 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 159-336
Cow position: chr27:11413973-11414161 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 110

Conread position: 159-366
Cow position: chr27:8592956-8592740 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 36, 114

Conread position: 161-363
Cow position: chr27:13317136-13316916 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 34, 173

Conread position: 195-336
Cow position: chr27:27192816-27192958 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 195-354
Cow position: chr27:13844179-13844347 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 195-362
Cow position: chr27:816229-816405 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 0

Conread position: 195-363
Cow position: chr27:12239601-12239425 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 196-354
Cow position: chr27:3990268-3990434 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 46

Conread position: 202-363
Cow position: chr27:4834666-4834501 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 38, 24

Conread position: 213-357
Cow position: chr27:1536685-1536532 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 248-363
Cow position: chr27:21392485-21392367 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 90, 0

Show alignments to all cow chromosomes.