Cow genome map
| Conread name: | Mixc-0025k15 |
| Conread position: | 426-587 |
| Cow position: | chr11:31894402-31894243 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 26, 121 |
| Conread position: | 426-618 |
| Cow position: | chr11:67745449-67745264 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 426-671 |
| Cow position: | chr11:23047634-23047882 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 427-574 |
| Cow position: | chr11:34642104-34642248 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 113 |
| Conread position: | 430-591 |
| Cow position: | chr11:9083603-9083441 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 454-575 |
| Cow position: | chr11:52832621-52832741 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 454-584 |
| Cow position: | chr11:32438852-32438980 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 454-586 |
| Cow position: | chr11:19502068-19501938 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 454-587 |
| Cow position: | chr11:11785433-11785300 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 7 |
| Conread position: | 454-590 |
| Cow position: | chr11:31422831-31422696 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 454-591 |
| Cow position: | chr11:47193614-47193478 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 129, 7 |
| Conread position: | 454-666 |
| Cow position: | chr11:38845165-38845376 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 143, 7 |
| Conread position: | 454-700 |
| Cow position: | chr11:14941510-14941752 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 123, 7 |
| Conread position: | 455-548 |
| Cow position: | chr11:373044-373138 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 457-574 |
| Cow position: | chr11:46700109-46699996 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 459-686 |
| Cow position: | chr11:2393993-2394220 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 125, 50 |
| Conread position: | 461-580 |
| Cow position: | chr11:9056052-9055936 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 461-581 |
| Cow position: | chr11:25861513-25861630 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 461-581 |
| Cow position: | chr11:54244767-54244648 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 461-582 |
| Cow position: | chr11:7001835-7001957 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 62 |
| Conread position: | 461-582 |
| Cow position: | chr11:8232355-8232476 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-583 |
| Cow position: | chr11:26468241-26468120 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 461-583 |
| Cow position: | chr11:27681595-27681473 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-583 |
| Cow position: | chr11:81518082-81518200 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-584 |
| Cow position: | chr11:696254-696374 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 461-584 |
| Cow position: | chr11:4059967-4060088 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 461-584 |
| Cow position: | chr11:12949854-12949972 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 461-584 |
| Cow position: | chr11:17452327-17452208 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-584 |
| Cow position: | chr11:40275507-40275630 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-584 |
| Cow position: | chr11:40278999-40279122 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-584 |
| Cow position: | chr11:53445867-53445749 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 461-584 |
| Cow position: | chr11:53452255-53452374 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-585 |
| Cow position: | chr11:62573913-62574039 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 461-586 |
| Cow position: | chr11:37372405-37372278 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 461-586 |
| Cow position: | chr11:46413667-46413542 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-586 |
| Cow position: | chr11:47369031-47369156 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-587 |
| Cow position: | chr11:8828538-8828660 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-587 |
| Cow position: | chr11:11752422-11752549 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 461-587 |
| Cow position: | chr11:34945977-34946103 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-587 |
| Cow position: | chr11:67236494-67236370 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 69, 87 |
| Conread position: | 461-587 |
| Cow position: | chr11:72082798-72082676 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-589 |
| Cow position: | chr11:65988318-65988194 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-590 |
| Cow position: | chr11:27722488-27722357 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 461-590 |
| Cow position: | chr11:50953469-50953598 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-591 |
| Cow position: | chr11:36701844-36701716 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 128, 13 |
| Conread position: | 461-591 |
| Cow position: | chr11:52402558-52402427 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 461-591 |
| Cow position: | chr11:73499101-73499227 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-592 |
| Cow position: | chr11:19606406-19606281 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 461-593 |
| Cow position: | chr11:50951649-50951518 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 128, 23 |
| Conread position: | 461-611 |
| Cow position: | chr11:62215098-62215247 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 129 |
| Conread position: | 461-638 |
| Cow position: | chr11:24625935-24625758 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 130, 25 |
| Conread position: | 461-666 |
| Cow position: | chr11:47565843-47566048 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 82, 146 |
| Conread position: | 461-674 |
| Cow position: | chr11:14308733-14308520 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 159, 128 |
| Conread position: | 461-680 |
| Cow position: | chr11:41272232-41272015 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 105 |
| Conread position: | 461-687 |
| Cow position: | chr11:20491662-20491441 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 191, 54 |
| Conread position: | 461-687 |
| Cow position: | chr11:75255499-75255279 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 116, 85 |
| Conread position: | 461-694 |
| Cow position: | chr11:43646317-43646551 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 461-696 |
| Cow position: | chr11:13039087-13039307 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 461-700 |
| Cow position: | chr11:11460566-11460321 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 89, 30 |
| Conread position: | 461-700 |
| Cow position: | chr11:63508505-63508260 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 122, 30 |
| Conread position: | 461-700 |
| Cow position: | chr11:84795655-84795899 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 462-587 |
| Cow position: | chr11:42519826-42519706 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 463-587 |
| Cow position: | chr11:45890051-45889931 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 471-577 |
| Cow position: | chr11:70995057-70995157 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 477-700 |
| Cow position: | chr11:63156839-63157079 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 158 |
| Conread position: | 562-700 |
| Cow position: | chr11:50951522-50951384 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 56 |
Show alignments to all cow chromosomes.