Cow genome map
| Conread name: | Mixc-0025k15 |
| Conread position: | 426-583 |
| Cow position: | chr3:10431723-10431570 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 115 |
| Conread position: | 427-587 |
| Cow position: | chr3:51146549-51146704 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 447-687 |
| Cow position: | chr3:1300318-1300070 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 5, 100 |
| Conread position: | 454-584 |
| Cow position: | chr3:28238477-28238608 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 454-587 |
| Cow position: | chr3:17633951-17634081 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 454-587 |
| Cow position: | chr3:27532561-27532692 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 454-587 |
| Cow position: | chr3:41550282-41550413 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 454-590 |
| Cow position: | chr3:15655052-15655188 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 57, 5 |
| Conread position: | 455-586 |
| Cow position: | chr3:61322934-61322807 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 456-572 |
| Cow position: | chr3:8457746-8457631 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 457-581 |
| Cow position: | chr3:23111421-23111545 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 457-589 |
| Cow position: | chr3:74611654-74611527 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 457-700 |
| Cow position: | chr3:23477082-23476825 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 178 |
| Conread position: | 459-582 |
| Cow position: | chr3:25250993-25250875 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 459-585 |
| Cow position: | chr3:61009351-61009471 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 101, 62 |
| Conread position: | 459-587 |
| Cow position: | chr3:54862329-54862451 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 461-548 |
| Cow position: | chr3:74912941-74912853 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 78 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 461-555 |
| Cow position: | chr3:8746144-8746238 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-569 |
| Cow position: | chr3:36204640-36204532 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-575 |
| Cow position: | chr3:24300448-24300334 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-579 |
| Cow position: | chr3:5419776-5419890 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-580 |
| Cow position: | chr3:8752874-8752756 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 461-582 |
| Cow position: | chr3:24538960-24538843 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-582 |
| Cow position: | chr3:31933012-31933129 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 461-582 |
| Cow position: | chr3:34675810-34675689 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-584 |
| Cow position: | chr3:891352-891233 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-584 |
| Cow position: | chr3:48629501-48629625 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 461-587 |
| Cow position: | chr3:3736387-3736260 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 461-587 |
| Cow position: | chr3:12255566-12255442 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 461-587 |
| Cow position: | chr3:15221430-15221556 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-587 |
| Cow position: | chr3:18214048-18214178 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 461-587 |
| Cow position: | chr3:23091891-23092014 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 461-587 |
| Cow position: | chr3:36100922-36100800 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 461-587 |
| Cow position: | chr3:37452157-37452034 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 86 |
| Conread position: | 461-587 |
| Cow position: | chr3:41718479-41718358 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 461-587 |
| Cow position: | chr3:51492871-51492746 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 461-588 |
| Cow position: | chr3:5601078-5601206 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 461-590 |
| Cow position: | chr3:14505827-14505956 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-590 |
| Cow position: | chr3:50281664-50281793 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 105 |
| Conread position: | 461-590 |
| Cow position: | chr3:53588297-53588425 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 461-590 |
| Cow position: | chr3:58447977-58448101 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 461-590 |
| Cow position: | chr3:66707979-66708108 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-591 |
| Cow position: | chr3:39910971-39911097 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-591 |
| Cow position: | chr3:55991780-55991908 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 86 |
| Conread position: | 461-592 |
| Cow position: | chr3:58632649-58632523 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 461-593 |
| Cow position: | chr3:25076079-25076212 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 461-596 |
| Cow position: | chr3:53091575-53091442 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 123, 21 |
| Conread position: | 461-665 |
| Cow position: | chr3:55373481-55373682 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 86 |
| Conread position: | 461-683 |
| Cow position: | chr3:34085968-34086195 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 128, 32 |
| Conread position: | 461-683 |
| Cow position: | chr3:46094909-46094677 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 109, 52 |
| Conread position: | 461-683 |
| Cow position: | chr3:58865386-58865618 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 82, 52 |
| Conread position: | 461-683 |
| Cow position: | chr3:65771247-65771468 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 121, 30 |
| Conread position: | 461-699 |
| Cow position: | chr3:59608591-59608333 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 461-700 |
| Cow position: | chr3:9074258-9074497 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 122, 192 |
| Conread position: | 461-700 |
| Cow position: | chr3:22271367-22271610 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 139, 76 |
| Conread position: | 461-700 |
| Cow position: | chr3:22953797-22954027 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 461-700 |
| Cow position: | chr3:25091118-25090887 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 119, 30 |
| Conread position: | 461-700 |
| Cow position: | chr3:26493143-26493397 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 461-700 |
| Cow position: | chr3:32596857-32597103 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 11 |
| Conread position: | 461-700 |
| Cow position: | chr3:37485709-37485953 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 71 |
| Conread position: | 461-700 |
| Cow position: | chr3:54340334-54340585 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 124, 172 |
| Conread position: | 461-700 |
| Cow position: | chr3:63039188-63038960 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 461-711 |
| Cow position: | chr3:61116317-61116557 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 173, 74 |
| Conread position: | 462-701 |
| Cow position: | chr3:4329406-4329166 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 127, 78 |
| Conread position: | 463-583 |
| Cow position: | chr3:11919951-11920066 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 463-687 |
| Cow position: | chr3:49131977-49132208 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 52, 133 |
| Conread position: | 463-688 |
| Cow position: | chr3:68262850-68262624 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 67, 121 |
| Conread position: | 463-703 |
| Cow position: | chr3:49427899-49428129 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 126, 83 |
| Conread position: | 464-573 |
| Cow position: | chr3:58291808-58291913 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 464-582 |
| Cow position: | chr3:77490654-77490545 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 464-587 |
| Cow position: | chr3:55778118-55777999 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 464-587 |
| Cow position: | chr3:62884288-62884169 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 466-587 |
| Cow position: | chr3:33327792-33327670 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 468-701 |
| Cow position: | chr3:18757724-18757949 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 89, 52 |
| Conread position: | 469-590 |
| Cow position: | chr3:48271412-48271291 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 115, 83 |
| Conread position: | 471-584 |
| Cow position: | chr3:15684844-15684957 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 471-700 |
| Cow position: | chr3:44861234-44861479 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 118, 68 |
| Conread position: | 480-700 |
| Cow position: | chr3:64536490-64536722 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 98 |
| Conread position: | 486-696 |
| Cow position: | chr3:45744737-45744532 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 491-584 |
| Cow position: | chr3:77981259-77981352 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-587 |
| Cow position: | chr3:74699326-74699421 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.