Cow genome map
| Conread name: | Mixc-0025k15 |
| Conread position: | 427-683 |
| Cow position: | chr9:8617701-8617965 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 436-698 |
| Cow position: | chr9:41958898-41958620 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 447-584 |
| Cow position: | chr9:4858439-4858577 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 62, 5 |
| Conread position: | 447-699 |
| Cow position: | chr9:49847109-49847370 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 453-700 |
| Cow position: | chr9:8914192-8914443 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 130, 8 |
| Conread position: | 454-584 |
| Cow position: | chr9:11870118-11870247 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 454-584 |
| Cow position: | chr9:20200204-20200334 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 454-584 |
| Cow position: | chr9:55562408-55562541 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 454-587 |
| Cow position: | chr9:38926995-38927123 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 7 |
| Conread position: | 454-591 |
| Cow position: | chr9:15684875-15684739 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 130, 7 |
| Conread position: | 454-672 |
| Cow position: | chr9:15951246-15951027 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 39 |
| Conread position: | 454-700 |
| Cow position: | chr9:3958978-3959237 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 126, 5 |
| Conread position: | 454-700 |
| Cow position: | chr9:5059403-5059169 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 196, 7 |
| Conread position: | 454-700 |
| Cow position: | chr9:11102889-11102634 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 125, 92 |
| Conread position: | 455-585 |
| Cow position: | chr9:54437175-54437306 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 455-587 |
| Cow position: | chr9:26645833-26645970 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 455-590 |
| Cow position: | chr9:34725598-34725466 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 455-609 |
| Cow position: | chr9:3845295-3845149 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 456-584 |
| Cow position: | chr9:42037565-42037695 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 459-587 |
| Cow position: | chr9:35708703-35708579 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 461-578 |
| Cow position: | chr9:20039212-20039100 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 461-581 |
| Cow position: | chr9:8657513-8657393 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-581 |
| Cow position: | chr9:48576724-48576609 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 461-582 |
| Cow position: | chr9:15006831-15006715 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 461-582 |
| Cow position: | chr9:17110691-17110807 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-582 |
| Cow position: | chr9:18110946-18110831 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 461-583 |
| Cow position: | chr9:27292362-27292240 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 9, 110 |
| Conread position: | 461-584 |
| Cow position: | chr9:32817224-32817101 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-586 |
| Cow position: | chr9:19382248-19382368 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-587 |
| Cow position: | chr9:3931880-3932004 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 461-587 |
| Cow position: | chr9:12498927-12499054 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 461-587 |
| Cow position: | chr9:21462948-21462826 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-587 |
| Cow position: | chr9:53794610-53794488 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 461-587 |
| Cow position: | chr9:54206407-54206281 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-587 |
| Cow position: | chr9:64007964-64007842 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 461-588 |
| Cow position: | chr9:41957724-41957847 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 461-590 |
| Cow position: | chr9:10667106-10666978 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 122, 52 |
| Conread position: | 461-590 |
| Cow position: | chr9:16118646-16118773 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 461-592 |
| Cow position: | chr9:34204047-34204179 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 461-611 |
| Cow position: | chr9:24837455-24837601 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 461-648 |
| Cow position: | chr9:33059354-33059153 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 172 |
| Conread position: | 461-666 |
| Cow position: | chr9:34309946-34310146 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 191, 85 |
| Conread position: | 461-667 |
| Cow position: | chr9:14184583-14184785 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 159, 85 |
| Conread position: | 461-667 |
| Cow position: | chr9:15033826-15034025 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 159, 64 |
| Conread position: | 461-669 |
| Cow position: | chr9:32266470-32266245 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 116, 173 |
| Conread position: | 461-687 |
| Cow position: | chr9:23443507-23443727 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 112, 37 |
| Conread position: | 461-687 |
| Cow position: | chr9:23450458-23450678 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 112, 37 |
| Conread position: | 461-700 |
| Cow position: | chr9:18093725-18093482 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 461-700 |
| Cow position: | chr9:20839546-20839795 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 122, 85 |
| Conread position: | 461-700 |
| Cow position: | chr9:31886465-31886234 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 177, 63 |
| Conread position: | 461-700 |
| Cow position: | chr9:34568792-34568565 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 128, 30 |
| Conread position: | 461-703 |
| Cow position: | chr9:2863361-2863611 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 114, 168 |
| Conread position: | 462-578 |
| Cow position: | chr9:26093248-26093361 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 462-587 |
| Cow position: | chr9:43926191-43926070 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 463-587 |
| Cow position: | chr9:2114087-2113963 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 463-587 |
| Cow position: | chr9:39428880-39428756 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-589 |
| Cow position: | chr9:59761714-59761587 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 463-677 |
| Cow position: | chr9:39152760-39152546 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 166, 83 |
| Conread position: | 466-701 |
| Cow position: | chr9:58204595-58204841 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 43, 187 |
| Conread position: | 471-665 |
| Cow position: | chr9:11201517-11201711 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 144, 117 |
| Conread position: | 472-590 |
| Cow position: | chr9:44552675-44552793 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 473-700 |
| Cow position: | chr9:214531-214287 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 475-579 |
| Cow position: | chr9:54924551-54924654 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 478-700 |
| Cow position: | chr9:49985896-49986123 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 141 |
Show alignments to all cow chromosomes.