Cow genome map
| Conread name: | Mixc-0029,d15 |
| Conread position: | 1-175 |
| Cow position: | chr3:48229995-48230162 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 87 |
| Conread position: | 1-176 |
| Cow position: | chr3:2917930-2917753 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-176 |
| Cow position: | chr3:51242842-51242665 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-189 |
| Cow position: | chr3:50915801-50915612 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 82 |
| Conread position: | 1-196 |
| Cow position: | chr3:7158246-7158443 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-196 |
| Cow position: | chr3:54341788-54341981 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 1-196 |
| Cow position: | chr3:63003072-63003266 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 44, 139 |
| Conread position: | 1-197 |
| Cow position: | chr3:21304322-21304518 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 46, 142 |
| Conread position: | 1-200 |
| Cow position: | chr3:24314936-24314736 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-200 |
| Cow position: | chr3:27918904-27918704 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 1-200 |
| Cow position: | chr3:37625445-37625244 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 46, 113 |
| Conread position: | 1-200 |
| Cow position: | chr3:53516082-53515881 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 1-200 |
| Cow position: | chr3:56339950-56340151 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-200 |
| Cow position: | chr3:64016893-64017093 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 120 |
| Conread position: | 1-200 |
| Cow position: | chr3:66890493-66890694 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-200 |
| Cow position: | chr3:83232766-83232961 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 101, 40 |
| Conread position: | 1-219 |
| Cow position: | chr3:47080941-47081165 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-220 |
| Cow position: | chr3:22336358-22336133 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-221 |
| Cow position: | chr3:1516625-1516399 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-221 |
| Cow position: | chr3:3523489-3523265 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 57 |
| Conread position: | 1-221 |
| Cow position: | chr3:6782853-6782628 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 1-221 |
| Cow position: | chr3:19737050-19736824 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-221 |
| Cow position: | chr3:32622567-32622793 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 46, 181 |
| Conread position: | 1-221 |
| Cow position: | chr3:36118131-36117906 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-221 |
| Cow position: | chr3:37969515-37969292 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 46, 99 |
| Conread position: | 1-221 |
| Cow position: | chr3:40339642-40339868 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 131 |
| Conread position: | 1-221 |
| Cow position: | chr3:46679900-46679675 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 1-221 |
| Cow position: | chr3:46860833-46861059 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-221 |
| Cow position: | chr3:49613506-49613733 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-221 |
| Cow position: | chr3:64027616-64027842 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-221 |
| Cow position: | chr3:66620651-66620423 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 1-222 |
| Cow position: | chr3:12679547-12679773 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 1-222 |
| Cow position: | chr3:18811977-18811749 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-222 |
| Cow position: | chr3:19721689-19721920 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 174 |
| Conread position: | 1-223 |
| Cow position: | chr3:5995226-5995453 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 1-223 |
| Cow position: | chr3:10240131-10239902 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 142 |
| Conread position: | 1-223 |
| Cow position: | chr3:18541932-18542159 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 138 |
| Conread position: | 1-223 |
| Cow position: | chr3:21182217-21182439 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 39, 82 |
| Conread position: | 1-223 |
| Cow position: | chr3:23289866-23290094 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 96 |
| Conread position: | 1-223 |
| Cow position: | chr3:34030422-34030650 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 1-223 |
| Cow position: | chr3:49544735-49544962 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 1-223 |
| Cow position: | chr3:57484255-57484481 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 128 |
| Conread position: | 1-223 |
| Cow position: | chr3:59861842-59861614 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 1-223 |
| Cow position: | chr3:72630544-72630317 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 1-223 |
| Cow position: | chr3:75040693-75040921 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 1-223 |
| Cow position: | chr3:77424283-77424053 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 1-224 |
| Cow position: | chr3:20381013-20380784 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-224 |
| Cow position: | chr3:36881442-36881673 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-224 |
| Cow position: | chr3:49678267-49678039 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 1-226 |
| Cow position: | chr3:18356026-18356258 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 140 |
| Conread position: | 1-226 |
| Cow position: | chr3:48842641-48842410 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-226 |
| Cow position: | chr3:64651096-64650865 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-232 |
| Cow position: | chr3:6686282-6686049 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 1-245 |
| Cow position: | chr3:5884014-5883762 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-247 |
| Cow position: | chr3:23213601-23213850 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 139 |
| Conread position: | 1-251 |
| Cow position: | chr3:45033211-45032954 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 44, 229 |
| Conread position: | 1-252 |
| Cow position: | chr3:7480761-7481012 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 1-252 |
| Cow position: | chr3:18463096-18463346 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 1-252 |
| Cow position: | chr3:29330801-29331058 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-252 |
| Cow position: | chr3:46503010-46502754 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 1-252 |
| Cow position: | chr3:68699496-68699760 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 2-221 |
| Cow position: | chr3:19879126-19878901 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-223 |
| Cow position: | chr3:40823862-40823635 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 3-223 |
| Cow position: | chr3:19756483-19756710 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 137 |
| Conread position: | 3-253 |
| Cow position: | chr3:595051-594796 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 44, 139 |
| Conread position: | 7-221 |
| Cow position: | chr3:41211271-41211493 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 13-226 |
| Cow position: | chr3:31415999-31415784 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 34, 138 |
| Conread position: | 14-221 |
| Cow position: | chr3:7169250-7169036 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 33, 170 |
| Conread position: | 30-221 |
| Cow position: | chr3:74439744-74439547 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 110 |
| Conread position: | 306-624 |
| Cow position: | chr3:52655446-52655127 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 313-637 |
| Cow position: | chr3:64821833-64822163 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 51 |
| Conread position: | 321-637 |
| Cow position: | chr3:70887005-70887321 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 324-637 |
| Cow position: | chr3:12680159-12679843 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 339-637 |
| Cow position: | chr3:31415412-31415723 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 341-506 |
| Cow position: | chr3:49601672-49601512 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 112, 23 |
| Conread position: | 355-637 |
| Cow position: | chr3:32617106-32616820 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 51, 116 |
| Conread position: | 359-513 |
| Cow position: | chr3:37624590-37624744 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 106, 51 |
| Conread position: | 388-635 |
| Cow position: | chr3:18728829-18728579 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 192 |
| Conread position: | 509-633 |
| Cow position: | chr3:37625028-37625152 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 60 |
Show alignments to all cow chromosomes.