Cow genome map

Conread name: Mixc-0029,d15

Conread position: 1-175
Cow position: chr3:48229995-48230162 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 46, 87

Conread position: 1-176
Cow position: chr3:2917930-2917753 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 1-176
Cow position: chr3:51242842-51242665 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 1-189
Cow position: chr3:50915801-50915612 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 82

Conread position: 1-196
Cow position: chr3:7158246-7158443 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 1-196
Cow position: chr3:54341788-54341981 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 29

Conread position: 1-196
Cow position: chr3:63003072-63003266 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 44, 139

Conread position: 1-197
Cow position: chr3:21304322-21304518 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 154
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 46, 142

Conread position: 1-200
Cow position: chr3:24314936-24314736 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 108, 0

Conread position: 1-200
Cow position: chr3:27918904-27918704 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 66, 48

Conread position: 1-200
Cow position: chr3:37625445-37625244 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 46, 113

Conread position: 1-200
Cow position: chr3:53516082-53515881 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 141

Conread position: 1-200
Cow position: chr3:56339950-56340151 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 135
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 1-200
Cow position: chr3:64016893-64017093 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 46, 120

Conread position: 1-200
Cow position: chr3:66890493-66890694 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 1-200
Cow position: chr3:83232766-83232961 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 101, 40

Conread position: 1-219
Cow position: chr3:47080941-47081165 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 1-220
Cow position: chr3:22336358-22336133 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 46, 0

Conread position: 1-221
Cow position: chr3:1516625-1516399 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 1-221
Cow position: chr3:3523489-3523265 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 57

Conread position: 1-221
Cow position: chr3:6782853-6782628 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 68

Conread position: 1-221
Cow position: chr3:19737050-19736824 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 1-221
Cow position: chr3:32622567-32622793 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 46, 181

Conread position: 1-221
Cow position: chr3:36118131-36117906 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 105, 0

Conread position: 1-221
Cow position: chr3:37969515-37969292 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 46, 99

Conread position: 1-221
Cow position: chr3:40339642-40339868 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 131

Conread position: 1-221
Cow position: chr3:46679900-46679675 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 46, 66

Conread position: 1-221
Cow position: chr3:46860833-46861059 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 1-221
Cow position: chr3:49613506-49613733 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 1-221
Cow position: chr3:64027616-64027842 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 46, 0

Conread position: 1-221
Cow position: chr3:66620651-66620423 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 46, 141

Conread position: 1-222
Cow position: chr3:12679547-12679773 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 46, 61

Conread position: 1-222
Cow position: chr3:18811977-18811749 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 1-222
Cow position: chr3:19721689-19721920 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 174

Conread position: 1-223
Cow position: chr3:5995226-5995453 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 46, 88

Conread position: 1-223
Cow position: chr3:10240131-10239902 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 46, 142

Conread position: 1-223
Cow position: chr3:18541932-18542159 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 138

Conread position: 1-223
Cow position: chr3:21182217-21182439 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 39, 82

Conread position: 1-223
Cow position: chr3:23289866-23290094 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 96

Conread position: 1-223
Cow position: chr3:34030422-34030650 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 139

Conread position: 1-223
Cow position: chr3:49544735-49544962 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 115

Conread position: 1-223
Cow position: chr3:57484255-57484481 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 128

Conread position: 1-223
Cow position: chr3:59861842-59861614 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 46, 109

Conread position: 1-223
Cow position: chr3:72630544-72630317 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 46, 139

Conread position: 1-223
Cow position: chr3:75040693-75040921 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 46, 139

Conread position: 1-223
Cow position: chr3:77424283-77424053 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 141

Conread position: 1-224
Cow position: chr3:20381013-20380784 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 46, 0

Conread position: 1-224
Cow position: chr3:36881442-36881673 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 1-224
Cow position: chr3:49678267-49678039 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 46, 68

Conread position: 1-226
Cow position: chr3:18356026-18356258 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 44, 140

Conread position: 1-226
Cow position: chr3:48842641-48842410 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 0

Conread position: 1-226
Cow position: chr3:64651096-64650865 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 1-232
Cow position: chr3:6686282-6686049 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 46, 19

Conread position: 1-245
Cow position: chr3:5884014-5883762 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 1-247
Cow position: chr3:23213601-23213850 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 139

Conread position: 1-251
Cow position: chr3:45033211-45032954 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 44, 229

Conread position: 1-252
Cow position: chr3:7480761-7481012 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 11

Conread position: 1-252
Cow position: chr3:18463096-18463346 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 16

Conread position: 1-252
Cow position: chr3:29330801-29331058 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 0

Conread position: 1-252
Cow position: chr3:46503010-46502754 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 175
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 139

Conread position: 1-252
Cow position: chr3:68699496-68699760 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 177
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 2-221
Cow position: chr3:19879126-19878901 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 2-223
Cow position: chr3:40823862-40823635 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 3-223
Cow position: chr3:19756483-19756710 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 44, 137

Conread position: 3-253
Cow position: chr3:595051-594796 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 184
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 44, 139

Conread position: 7-221
Cow position: chr3:41211271-41211493 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 13-226
Cow position: chr3:31415999-31415784 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 166
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 34, 138

Conread position: 14-221
Cow position: chr3:7169250-7169036 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 33, 170

Conread position: 30-221
Cow position: chr3:74439744-74439547 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 110

Conread position: 306-624
Cow position: chr3:52655446-52655127 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 216
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 19, 101

Conread position: 313-637
Cow position: chr3:64821833-64822163 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 51

Conread position: 321-637
Cow position: chr3:70887005-70887321 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 28

Conread position: 324-637
Cow position: chr3:12680159-12679843 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 95

Conread position: 339-637
Cow position: chr3:31415412-31415723 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 341-506
Cow position: chr3:49601672-49601512 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 112, 23

Conread position: 355-637
Cow position: chr3:32617106-32616820 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 51, 116

Conread position: 359-513
Cow position: chr3:37624590-37624744 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 106, 51

Conread position: 388-635
Cow position: chr3:18728829-18728579 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 192

Conread position: 509-633
Cow position: chr3:37625028-37625152 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 60

Show alignments to all cow chromosomes.