Cow genome map
| Conread name: | Mixc-0031e14 |
| Conread position: | 187-638 |
| Cow position: | chr22:12499757-12499315 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 190-638 |
| Cow position: | chr22:12399212-12399651 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 287 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 206-638 |
| Cow position: | chr22:12399479-12399897 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 304-638 |
| Cow position: | chr22:12430793-12431127 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 159, 135 |
| Conread position: | 304-638 |
| Cow position: | chr22:12431551-12431883 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 307, 15 |
| Conread position: | 304-638 |
| Cow position: | chr22:12431887-12432219 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 304-638 |
| Cow position: | chr22:12475444-12475776 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 304-638 |
| Cow position: | chr22:12475612-12475944 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 304-638 |
| Cow position: | chr22:12499815-12499483 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 305-598 |
| Cow position: | chr22:12458336-12458627 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 226, 9 |
| Conread position: | 305-599 |
| Cow position: | chr22:12499562-12499270 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 305-637 |
| Cow position: | chr22:11641046-11640716 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 305-638 |
| Cow position: | chr22:12475529-12475860 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 305-638 |
| Cow position: | chr22:12475697-12476028 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 305-638 |
| Cow position: | chr22:12476033-12476364 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 306-638 |
| Cow position: | chr22:12399064-12399399 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 307-638 |
| Cow position: | chr22:12475949-12476280 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 307-638 |
| Cow position: | chr22:12499310-12498979 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 64, 76 |
| Conread position: | 312-638 |
| Cow position: | chr22:12430717-12431043 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 314-599 |
| Cow position: | chr22:12399411-12399696 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 314-602 |
| Cow position: | chr22:12457839-12458127 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-638 |
| Cow position: | chr22:12385065-12385389 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-638 |
| Cow position: | chr22:12385149-12385475 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 314-638 |
| Cow position: | chr22:12398907-12399231 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 5, 9 |
| Conread position: | 314-638 |
| Cow position: | chr22:12398991-12399315 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-638 |
| Cow position: | chr22:12399243-12399567 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-638 |
| Cow position: | chr22:12430887-12431211 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 314-638 |
| Cow position: | chr22:12431727-12432051 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-638 |
| Cow position: | chr22:12431979-12432303 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-638 |
| Cow position: | chr22:12457923-12458247 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 60 |
| Conread position: | 314-638 |
| Cow position: | chr22:14429995-14429671 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 165, 160 |
| Conread position: | 315-638 |
| Cow position: | chr22:12384982-12385305 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 202, 208 |
| Conread position: | 315-638 |
| Cow position: | chr22:12398824-12399147 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-638 |
| Cow position: | chr22:12399496-12399819 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 224, 217 |
| Conread position: | 315-638 |
| Cow position: | chr22:12418511-12418834 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 166, 170 |
| Conread position: | 315-638 |
| Cow position: | chr22:12431224-12431547 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-638 |
| Cow position: | chr22:12431476-12431799 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 315-638 |
| Cow position: | chr22:12458092-12458415 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 34, 39 |
| Conread position: | 315-638 |
| Cow position: | chr22:12475369-12475692 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-638 |
| Cow position: | chr22:12499218-12498895 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-638 |
| Cow position: | chr22:12499890-12499567 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-639 |
| Cow position: | chr22:12431056-12431380 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 315-639 |
| Cow position: | chr22:12499386-12499062 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 312, 307 |
| Conread position: | 316-638 |
| Cow position: | chr22:11641121-11640799 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 316-638 |
| Cow position: | chr22:12431393-12431715 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 316-638 |
| Cow position: | chr22:12458177-12458499 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-639 |
| Cow position: | chr22:12475875-12476197 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 310, 305 |
| Conread position: | 321-638 |
| Cow position: | chr22:12384906-12385221 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 321-638 |
| Cow position: | chr22:12430558-12430875 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-599 |
| Cow position: | chr22:11641451-11641174 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 130, 121 |
| Conread position: | 322-620 |
| Cow position: | chr22:12385411-12385709 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 322-638 |
| Cow position: | chr22:11640947-11640631 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 104 |
| Conread position: | 322-638 |
| Cow position: | chr22:12418602-12418918 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 322-638 |
| Cow position: | chr22:12431147-12431463 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-638 |
| Cow position: | chr22:12457763-12458079 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 282, 302 |
| Conread position: | 322-638 |
| Cow position: | chr22:12458015-12458331 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 322-638 |
| Cow position: | chr22:12458267-12458583 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 293, 298 |
| Conread position: | 322-638 |
| Cow position: | chr22:12475292-12475608 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-638 |
| Cow position: | chr22:12475796-12476112 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-638 |
| Cow position: | chr22:12499463-12499147 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 205, 212 |
| Conread position: | 322-638 |
| Cow position: | chr22:46654606-46654290 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 322-639 |
| Cow position: | chr22:12499967-12499650 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 326-614 |
| Cow position: | chr22:12399172-12399459 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 40, 5 |
| Conread position: | 333-599 |
| Cow position: | chr22:12430654-12430920 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 121, 108 |
| Conread position: | 333-638 |
| Cow position: | chr22:12418697-12419002 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 334-638 |
| Cow position: | chr22:12398759-12399063 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 338-638 |
| Cow position: | chr22:12418450-12418750 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 341-638 |
| Cow position: | chr22:12432090-12432387 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 365-638 |
| Cow position: | chr22:11641156-11640883 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 176, 171 |
| Conread position: | 373-638 |
| Cow position: | chr22:14468265-14468000 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 378-638 |
| Cow position: | chr22:14468344-14468084 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 401-638 |
| Cow position: | chr22:12475287-12475524 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 401-638 |
| Cow position: | chr22:12499972-12499735 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.