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Cow genome map

           
Conread name:
           
Mixc-0034c10
        

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:100474380-100474143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 161
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:86340317-86340599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
13, 244
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:87197967-87197674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
18, 155
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr1:60281521-60281208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:75933413-75933104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 173
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:54156587-54156929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
37, 161
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr1:9534311-9533980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 160
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr1:19885530-19885186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
16, 156
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr1:28177149-28176799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr1:28563420-28563783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 214
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr1:46939736-46940132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr1:53458841-53458424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
96, 330
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr1:4032777-4032362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 160
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr1:72105548-72105286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr1:29935244-29935578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr1:71078817-71079154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
94, 36
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr1:5597067-5597397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
86, 149
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr1:51446028-51445681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
94, 26
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr1:98461424-98461092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
3-371
               

               
Cow position:
               
chr1:24534116-24534489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr1:45555511-45555106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 47
               

               
Conread position:
               
3-395
               

               
Cow position:
               
chr1:81290647-81290248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 12
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr1:22729200-22728776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr1:22730878-22730490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
155, 110
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chr1:56225614-56225196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
25, 152
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr1:26895667-26896110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
94, 256
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr1:53521059-53520627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 162
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr1:81568884-81569321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
94, 155
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr1:93499764-93499337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
32, 24
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr1:101714261-101713829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
96, 139
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr1:96558706-96558924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr1:56618512-56618763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 151
               

               
Conread position:
               
4-310
               

               
Cow position:
               
chr1:22526018-22525708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr1:55705100-55705452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
76, 182
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr1:62036946-62036602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
30, 175
               

               
Conread position:
               
4-338
               

               
Cow position:
               
chr1:74084044-74084392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 309
               

               
Conread position:
               
4-395
               

               
Cow position:
               
chr1:13637521-13637937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
93, 23
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr1:73756105-73756345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 172
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chr1:98512066-98511814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
5-289
               

               
Cow position:
               
chr1:57420594-57420879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 162
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr1:33206739-33207027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr1:3882317-3882627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
82, 150
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr1:68763545-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 153
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr1:6078035-6077696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
23, 140
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr1:7971552-7971232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr1:80336106-80336445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
23, 171
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr1:85867731-85867395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
5-410
               

               
Cow position:
               
chr1:48105296-48105721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
5-410
               

               
Cow position:
               
chr1:68253737-68253306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
55, 185
               

               
Conread position:
               
5-410
               

               
Cow position:
               
chr1:94226413-94226833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 23
               

               
Conread position:
               
6-197
               

               
Cow position:
               
chr1:30862274-30862471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
6-209
               

               
Cow position:
               
chr1:186140-186348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 148
               

               
Conread position:
               
6-210
               

               
Cow position:
               
chr1:5674586-5674393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
6-214
               

               
Cow position:
               
chr1:68672461-68672676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 150
               

               
Conread position:
               
6-222
               

               
Cow position:
               
chr1:8347264-8347039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
25, 21
               

               
Conread position:
               
6-228
               

               
Cow position:
               
chr1:50992073-50991844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr1:81580318-81580071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
91, 224
               

               
Conread position:
               
6-253
               

               
Cow position:
               
chr1:45553102-45553359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 145
               

               
Conread position:
               
6-280
               

               
Cow position:
               
chr1:2975851-2976137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 144
               

               
Conread position:
               
6-287
               

               
Cow position:
               
chr1:23512517-23512804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
11, 57
               

               
Conread position:
               
6-287
               

               
Cow position:
               
chr1:65318715-65318426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
91, 41
               

               
Conread position:
               
6-289
               

               
Cow position:
               
chr1:65909653-65909375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 97
               

               
Conread position:
               
6-291
               

               
Cow position:
               
chr1:53369343-53369054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
6-294
               

               
Cow position:
               
chr1:53370224-53369922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
95, 154
               

               
Conread position:
               
6-294
               

               
Cow position:
               
chr1:97939098-97938813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
245, 108
               

               
Conread position:
               
6-302
               

               
Cow position:
               
chr1:24777852-24778148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 71
               

               
Conread position:
               
6-302
               

               
Cow position:
               
chr1:61005422-61005726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
91, 86
               

               
Conread position:
               
6-309
               

               
Cow position:
               
chr1:87095073-87095402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
6-310
               

               
Cow position:
               
chr1:83748082-83747772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
91, 28
               

               
Conread position:
               
6-332
               

               
Cow position:
               
chr1:87072836-87072510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
6-334
               

               
Cow position:
               
chr1:38277888-38278242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
6-334
               

               
Cow position:
               
chr1:98551860-98551517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr1:43340493-43340821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 75
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr1:49433123-49433463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
90, 155
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr1:53671609-53671948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
107, 116
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr1:54258707-54258369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 38
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr1:55357153-55357484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 125
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr1:79164952-79165289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr1:85162404-85162746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
27, 178
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr1:95101079-95100763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 79
               

               
Conread position:
               
6-337
               

               
Cow position:
               
chr1:64803959-64804307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
20, 184
               

               
Conread position:
               
6-340
               

               
Cow position:
               
chr1:34771364-34771706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 19
               

               
Conread position:
               
6-340
               

               
Cow position:
               
chr1:69678186-69678528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
6-371
               

               
Cow position:
               
chr1:78857188-78857568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
144, 107
               

               
Conread position:
               
6-379
               

               
Cow position:
               
chr1:65103757-65103381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 58
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr1:34856487-34856885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
91, 156
               

               
Conread position:
               
6-382
               

               
Cow position:
               
chr1:76470784-76470402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 95
               

               
Conread position:
               
6-388
               

               
Cow position:
               
chr1:52487840-52488221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
148, 53
               

               
Conread position:
               
6-395
               

               
Cow position:
               
chr1:61564919-61564521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
162, 76
               

               
Conread position:
               
6-396
               

               
Cow position:
               
chr1:23633789-23634171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
239, 107
               

               
Conread position:
               
6-396
               

               
Cow position:
               
chr1:33996781-33997183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 110
               

               
Conread position:
               
6-406
               

               
Cow position:
               
chr1:53308253-53308673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
86, 61
               

               
Conread position:
               
6-409
               

               
Cow position:
               
chr1:63434666-63435087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr1:1878161-1877741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
145, 106
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr1:3166935-3167351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
91, 151
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr1:11913736-11914157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 155
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr1:18936697-18937118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr1:37886671-37887071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
92, 177
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr1:43352515-43352934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 154
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr1:52496911-52496491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
245, 88
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr1:69264952-69264537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 156
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr1:76019557-76019965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr1:86113258-86113698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
25, 147
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr1:100400066-100400483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
66, 44
               

               
Conread position:
               
6-414
               

               
Cow position:
               
chr1:1980971-1981401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 174
               

               
Conread position:
               
7-146
               

               
Cow position:
               
chr1:99629301-99629165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
7-168
               

               
Cow position:
               
chr1:2462515-2462348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
90, 22
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr1:17317221-17317458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
90, 7
               

               
Conread position:
               
7-239
               

               
Cow position:
               
chr1:22824048-22823804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 157
               

               
Conread position:
               
7-262
               

               
Cow position:
               
chr1:72813758-72813488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
22, 151
               

               
Conread position:
               
7-276
               

               
Cow position:
               
chr1:20950856-20950583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
7-278
               

               
Cow position:
               
chr1:47886341-47886629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
7-285
               

               
Cow position:
               
chr1:91023327-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
7-291
               

               
Cow position:
               
chr1:5580197-5579906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
7-293
               

               
Cow position:
               
chr1:42175867-42175569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
7-294
               

               
Cow position:
               
chr1:96081618-96081328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
90, 22
               

               
Conread position:
               
7-295
               

               
Cow position:
               
chr1:22192908-22192606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
83, 8
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr1:31807001-31806713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr1:86110603-86110896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
24, 147
               

               
Conread position:
               
7-306
               

               
Cow position:
               
chr1:101280598-101280884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
7-310
               

               
Cow position:
               
chr1:101834958-101834650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 154
               

               
Conread position:
               
7-314
               

               
Cow position:
               
chr1:51417909-51417601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
7-332
               

               
Cow position:
               
chr1:82337640-82337979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 151
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr1:21836071-21835752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr1:48581269-48580935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
56, 60
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr1:52956391-52956063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr1:68855305-68854978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
106, 224
               

               
Conread position:
               
7-335
               

               
Cow position:
               
chr1:61885051-61884718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr1:36932293-36931961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 26
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr1:44507107-44506769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr1:75745002-75744662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 155
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr1:96136606-96136289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
120, 53
               

               
Conread position:
               
7-342
               

               
Cow position:
               
chr1:724880-724530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
94, 154
               

               
Conread position:
               
7-379
               

               
Cow position:
               
chr1:196867-197256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
7-395
               

               
Cow position:
               
chr1:33330955-33331343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
7-397
               

               
Cow position:
               
chr1:62964407-62964007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
7-402
               

               
Cow position:
               
chr1:33720243-33719837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
7-406
               

               
Cow position:
               
chr1:90621365-90621775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
82, 177
               

               
Conread position:
               
7-407
               

               
Cow position:
               
chr1:1956195-1956612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 62
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr1:2075211-2075612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
270, 107
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr1:48730693-48731109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr1:53623092-53622683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr1:72034787-72035214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 19
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr1:72068692-72069112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 165
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr1:87888529-87888121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
7-411
               

               
Cow position:
               
chr1:82884255-82884671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
7-417
               

               
Cow position:
               
chr1:25383808-25383370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
91, 316
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr1:98576186-98575969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
89, 153
               

               
Conread position:
               
8-250
               

               
Cow position:
               
chr1:56225925-56225681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 159
               

               
Conread position:
               
8-293
               

               
Cow position:
               
chr1:98413913-98413611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
26, 181
               

               
Conread position:
               
8-301
               

               
Cow position:
               
chr1:93554973-93554680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
8-302
               

               
Cow position:
               
chr1:7748352-7748053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
123, 100
               

               
Conread position:
               
8-302
               

               
Cow position:
               
chr1:91874775-91875071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
9, 150
               

               
Conread position:
               
8-334
               

               
Cow position:
               
chr1:52995165-52994827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
52, 156
               

               
Conread position:
               
8-334
               

               
Cow position:
               
chr1:89076493-89076832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 155
               

               
Conread position:
               
8-335
               

               
Cow position:
               
chr1:90868302-90868633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chr1:98360265-98360607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 145
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chr1:100741418-100741093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 144
               

               
Conread position:
               
8-337
               

               
Cow position:
               
chr1:47233339-47233674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
89, 152
               

               
Conread position:
               
8-370
               

               
Cow position:
               
chr1:71119659-71119266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
8-382
               

               
Cow position:
               
chr1:13414165-13413770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
8-385
               

               
Cow position:
               
chr1:77880594-77880975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 191
               

               
Conread position:
               
8-407
               

               
Cow position:
               
chr1:101822376-101822778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
8-410
               

               
Cow position:
               
chr1:53374568-53374149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 98
               

               
Conread position:
               
8-410
               

               
Cow position:
               
chr1:96964457-96964034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 258
               

               
Conread position:
               
9-260
               

               
Cow position:
               
chr1:43311633-43311898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 194
               

               
Conread position:
               
9-333
               

               
Cow position:
               
chr1:21955233-21955569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 136
               

               
Conread position:
               
9-333
               

               
Cow position:
               
chr1:84811802-84812132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr1:16766949-16767281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
21, 116
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr1:89381411-89381082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr1:40530964-40531308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
19, 286
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr1:68817661-68817997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 151
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr1:39068818-39069207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 152
               

               
Conread position:
               
9-401
               

               
Cow position:
               
chr1:81913017-81913429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 73
               

               
Conread position:
               
9-410
               

               
Cow position:
               
chr1:95499357-95499780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 222
               

               
Conread position:
               
10-302
               

               
Cow position:
               
chr1:7752516-7752219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
121, 104
               

               
Conread position:
               
10-330
               

               
Cow position:
               
chr1:51394552-51394232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
10-336
               

               
Cow position:
               
chr1:84238986-84239305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 84
               

               
Conread position:
               
10-387
               

               
Cow position:
               
chr1:56711466-56711879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
91, 298
               

               
Conread position:
               
10-392
               

               
Cow position:
               
chr1:47658482-47658091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr1:10778700-10778284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 151
               

               
Conread position:
               
11-232
               

               
Cow position:
               
chr1:71796177-71796408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
11-302
               

               
Cow position:
               
chr1:53398112-53397827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 105
               

               
Conread position:
               
11-302
               

               
Cow position:
               
chr1:92369870-92369568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 49
               

               
Conread position:
               
11-306
               

               
Cow position:
               
chr1:59519050-59518752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
11-327
               

               
Cow position:
               
chr1:71228228-71227887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
11-331
               

               
Cow position:
               
chr1:93044153-93043832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
93, 153
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr1:37706841-37707167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 144
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr1:43388914-43389246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 146
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr1:89341842-89342191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
18, 305
               

               
Conread position:
               
11-343
               

               
Cow position:
               
chr1:15334027-15333672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
11-397
               

               
Cow position:
               
chr1:12464527-12464925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 144
               

               
Conread position:
               
11-410
               

               
Cow position:
               
chr1:11729311-11728908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 105
               

               
Conread position:
               
12-336
               

               
Cow position:
               
chr1:45019666-45020002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
12-385
               

               
Cow position:
               
chr1:99609503-99609106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
85, 128
               

               
Conread position:
               
12-387
               

               
Cow position:
               
chr1:39426868-39427243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 109
               

               
Conread position:
               
13-179
               

               
Cow position:
               
chr1:84977169-84977332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
36, 54
               

               
Conread position:
               
13-216
               

               
Cow position:
               
chr1:98583887-98583679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
13-239
               

               
Cow position:
               
chr1:86061857-86062087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
13-249
               

               
Cow position:
               
chr1:42541731-42541485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
13-276
               

               
Cow position:
               
chr1:92996760-92997037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
84, 5
               

               
Conread position:
               
13-306
               

               
Cow position:
               
chr1:16060869-16061187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 274
               

               
Conread position:
               
13-306
               

               
Cow position:
               
chr1:24581710-24581414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
84, 163
               

               
Conread position:
               
13-336
               

               
Cow position:
               
chr1:3962552-3962882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 137
               

               
Conread position:
               
13-337
               

               
Cow position:
               
chr1:3923666-3923993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
15-301
               

               
Cow position:
               
chr1:97696876-97696577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 143
               

               
Conread position:
               
15-306
               

               
Cow position:
               
chr1:101632204-101632507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
16, 147
               

               
Conread position:
               
15-334
               

               
Cow position:
               
chr1:40192564-40192874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
15-336
               

               
Cow position:
               
chr1:102349620-102349956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
15-341
               

               
Cow position:
               
chr1:7740079-7739766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
81, 145
               

               
Conread position:
               
15-410
               

               
Cow position:
               
chr1:18780197-18780597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
73, 149
               

               
Conread position:
               
15-410
               

               
Cow position:
               
chr1:95177069-95176650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
16-293
               

               
Cow position:
               
chr1:70435128-70434848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
16-336
               

               
Cow position:
               
chr1:4291297-4290960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 305
               

               
Conread position:
               
16-336
               

               
Cow position:
               
chr1:74955890-74956222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 141
               

               
Conread position:
               
16-336
               

               
Cow position:
               
chr1:95057176-95056857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 140
               

               
Conread position:
               
16-336
               

               
Cow position:
               
chr1:100450047-100450383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
16-410
               

               
Cow position:
               
chr1:22827288-22826882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
17-335
               

               
Cow position:
               
chr1:43872188-43872532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
17-336
               

               
Cow position:
               
chr1:52052587-52052902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 230
               

               
Conread position:
               
17-336
               

               
Cow position:
               
chr1:94261665-94261349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
14, 10
               

               
Conread position:
               
18-233
               

               
Cow position:
               
chr1:45670761-45670543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 140
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr1:4180511-4180731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
18-249
               

               
Cow position:
               
chr1:80422401-80422169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 135
               

               
Conread position:
               
18-257
               

               
Cow position:
               
chr1:78794102-78794344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
79, 158
               

               
Conread position:
               
18-276
               

               
Cow position:
               
chr1:85549950-85550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
18-277
               

               
Cow position:
               
chr1:8128840-8129106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
18-282
               

               
Cow position:
               
chr1:76436611-76436347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
18-288
               

               
Cow position:
               
chr1:31272314-31272591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
18-300
               

               
Cow position:
               
chr1:85647653-85647944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
74, 36
               

               
Conread position:
               
18-306
               

               
Cow position:
               
chr1:20667614-20667910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 30
               

               
Conread position:
               
18-306
               

               
Cow position:
               
chr1:74928013-74927711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 144
               

               
Conread position:
               
18-322
               

               
Cow position:
               
chr1:86579091-86578764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
18-325
               

               
Cow position:
               
chr1:27114778-27114480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
113, 149
               

               
Conread position:
               
18-334
               

               
Cow position:
               
chr1:37321873-37322201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
90, 138
               

               
Conread position:
               
18-334
               

               
Cow position:
               
chr1:68618804-68619134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
18-334
               

               
Cow position:
               
chr1:93528830-93528494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
18-335
               

               
Cow position:
               
chr1:5135580-5135889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
18-335
               

               
Cow position:
               
chr1:22628520-22628835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 49
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr1:21787465-21787128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr1:43505658-43505325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
78, 282
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr1:49839613-49839309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr1:55230105-55229786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 29
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr1:56477721-56477396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
79, 143
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr1:69694865-69695207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
83, 11
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr1:84255896-84255556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
77, 163
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr1:99642241-99642568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
18-339
               

               
Cow position:
               
chr1:90975958-90976285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
18-340
               

               
Cow position:
               
chr1:74822580-74822249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
54, 109
               

               
Conread position:
               
18-371
               

               
Cow position:
               
chr1:3138042-3137687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
18-379
               

               
Cow position:
               
chr1:64302115-64302486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
18-400
               

               
Cow position:
               
chr1:1165715-1165326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
55, 67
               

               
Conread position:
               
18-407
               

               
Cow position:
               
chr1:54206689-54207098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
18-407
               

               
Cow position:
               
chr1:72011684-72012089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
146, 96
               

               
Conread position:
               
18-409
               

               
Cow position:
               
chr1:71253427-71253842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
78, 138
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr1:874783-874358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 144
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr1:15547599-15547184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 142
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr1:34159966-34159550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
20, 145
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr1:36998314-36997912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
79, 126
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr1:52039765-52039352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 192
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr1:73960829-73960415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 60
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr1:77462479-77462079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 34
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr1:81228203-81228616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr1:81613518-81613100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
79, 142
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr1:91066023-91066433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 74
               

               
Conread position:
               
18-414
               

               
Cow position:
               
chr1:42887148-42887550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
320, 95
               

               
Conread position:
               
18-419
               

               
Cow position:
               
chr1:71045873-71045460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 11
               

               
Conread position:
               
18-429
               

               
Cow position:
               
chr1:100800480-100800055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
19-197
               

               
Cow position:
               
chr1:62235320-62235507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
19-260
               

               
Cow position:
               
chr1:3607932-3607688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
82, 157
               

               
Conread position:
               
19-301
               

               
Cow position:
               
chr1:77683475-77683194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
78, 8
               

               
Conread position:
               
19-336
               

               
Cow position:
               
chr1:25281527-25281874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
10, 169
               

               
Conread position:
               
19-336
               

               
Cow position:
               
chr1:54732360-54732656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
19-378
               

               
Cow position:
               
chr1:50930851-50931222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 110
               

               
Conread position:
               
19-395
               

               
Cow position:
               
chr1:36875154-36874745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
75, 239
               

               
Conread position:
               
19-397
               

               
Cow position:
               
chr1:95017419-95017785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
319, 70
               

               
Conread position:
               
19-407
               

               
Cow position:
               
chr1:39417987-39418400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
19-410
               

               
Cow position:
               
chr1:24132935-24133340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 137
               

               
Conread position:
               
19-410
               

               
Cow position:
               
chr1:56229367-56228967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 96
               

               
Conread position:
               
19-410
               

               
Cow position:
               
chr1:57575633-57576047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 158
               

               
Conread position:
               
19-410
               

               
Cow position:
               
chr1:80988474-80988064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
20-217
               

               
Cow position:
               
chr1:97794424-97794628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
8, 137
               

               
Conread position:
               
20-276
               

               
Cow position:
               
chr1:43855421-43855162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
20-280
               

               
Cow position:
               
chr1:78838922-78838657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 7
               

               
Conread position:
               
20-294
               

               
Cow position:
               
chr1:14206027-14206312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
20-336
               

               
Cow position:
               
chr1:34686302-34685996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 26
               

               
Conread position:
               
20-395
               

               
Cow position:
               
chr1:89509794-89510202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
81, 162
               

               
Conread position:
               
20-410
               

               
Cow position:
               
chr1:4027990-4027576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
20-410
               

               
Cow position:
               
chr1:77720122-77720512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
20-410
               

               
Cow position:
               
chr1:82936470-82936867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
77, 83
               

               
Conread position:
               
21-233
               

               
Cow position:
               
chr1:30417922-30418133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
12, 6
               

               
Conread position:
               
21-301
               

               
Cow position:
               
chr1:96472556-96472281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
79, 130
               

               
Conread position:
               
21-334
               

               
Cow position:
               
chr1:54478455-54478128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
21-336
               

               
Cow position:
               
chr1:19144802-19145117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
21-336
               

               
Cow position:
               
chr1:68863158-68862837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
17, 137
               

               
Conread position:
               
21-337
               

               
Cow position:
               
chr1:75383102-75382792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
21-410
               

               
Cow position:
               
chr1:79844591-79844184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
129, 92
               

               
Conread position:
               
21-410
               

               
Cow position:
               
chr1:88338790-88338412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
283, 8
               

               
Conread position:
               
22-297
               

               
Cow position:
               
chr1:42545654-42545943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
75, 140
               

               
Conread position:
               
22-335
               

               
Cow position:
               
chr1:41252285-41252600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
76, 137
               

               
Conread position:
               
22-336
               

               
Cow position:
               
chr1:95215064-95215384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
22-336
               

               
Cow position:
               
chr1:102785078-102784762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
82, 50
               

               
Conread position:
               
22-407
               

               
Cow position:
               
chr1:82880769-82880383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
75, 151
               

               
Conread position:
               
22-410
               

               
Cow position:
               
chr1:85029078-85028676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
66, 7
               

               
Conread position:
               
22-417
               

               
Cow position:
               
chr1:49796118-49795709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
23-241
               

               
Cow position:
               
chr1:24406773-24406997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
127, 90
               

               
Conread position:
               
23-249
               

               
Cow position:
               
chr1:3352576-3352805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
78, 136
               

               
Conread position:
               
24-333
               

               
Cow position:
               
chr1:20099488-20099168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 24
               

               
Conread position:
               
24-336
               

               
Cow position:
               
chr1:25793319-25793637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 10
               

               
Conread position:
               
24-336
               

               
Cow position:
               
chr1:70538734-70538405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
74, 159
               

               
Conread position:
               
24-397
               

               
Cow position:
               
chr1:66430414-66430029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 135
               

               
Conread position:
               
24-410
               

               
Cow position:
               
chr1:72304266-72304655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
27-291
               

               
Cow position:
               
chr1:41115598-41115868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
27-293
               

               
Cow position:
               
chr1:91811900-91811631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 133
               

               
Conread position:
               
27-294
               

               
Cow position:
               
chr1:101866377-101866653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
27-332
               

               
Cow position:
               
chr1:96276930-96277249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
6, 135
               

               
Conread position:
               
27-336
               

               
Cow position:
               
chr1:7443097-7442786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
27-336
               

               
Cow position:
               
chr1:46218694-46218385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
16, 147
               

               
Conread position:
               
27-336
               

               
Cow position:
               
chr1:75142118-75141808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
24, 135
               

               
Conread position:
               
27-386
               

               
Cow position:
               
chr1:39509937-39510303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
6, 154
               

               
Conread position:
               
27-410
               

               
Cow position:
               
chr1:31934625-31934228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
124, 10
               

               
Conread position:
               
28-266
               

               
Cow position:
               
chr1:100817660-100817428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
86, 20
               

               
Conread position:
               
28-336
               

               
Cow position:
               
chr1:26201351-26201022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
73, 229
               

               
Conread position:
               
28-336
               

               
Cow position:
               
chr1:27145537-27145852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
29-207
               

               
Cow position:
               
chr1:45223699-45223510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
68, 132
               

               
Conread position:
               
29-228
               

               
Cow position:
               
chr1:100575920-100576130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
29-232
               

               
Cow position:
               
chr1:102306028-102306238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
29-249
               

               
Cow position:
               
chr1:87937013-87936788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
68, 7
               

               
Conread position:
               
29-254
               

               
Cow position:
               
chr1:6826181-6826405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
67, 129
               

               
Conread position:
               
29-273
               

               
Cow position:
               
chr1:86073714-86073459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 126
               

               
Conread position:
               
29-274
               

               
Cow position:
               
chr1:8359795-8360034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 50
               

               
Conread position:
               
29-276
               

               
Cow position:
               
chr1:90595452-90595693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
223, 85
               

               
Conread position:
               
29-278
               

               
Cow position:
               
chr1:42482315-42482062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 128
               

               
Conread position:
               
29-290
               

               
Cow position:
               
chr1:68245202-68245460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
220, 61
               

               
Conread position:
               
29-302
               

               
Cow position:
               
chr1:20544401-20544131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
29-302
               

               
Cow position:
               
chr1:55428838-55429120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
68, 134
               

               
Conread position:
               
29-322
               

               
Cow position:
               
chr1:484349-484650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 260
               

               
Conread position:
               
29-327
               

               
Cow position:
               
chr1:49317378-49317683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
75, 133
               

               
Conread position:
               
29-329
               

               
Cow position:
               
chr1:25734985-25734662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
66, 132
               

               
Conread position:
               
29-332
               

               
Cow position:
               
chr1:32001203-32001515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
72, 254
               

               
Conread position:
               
29-334
               

               
Cow position:
               
chr1:56643486-56643785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
29-335
               

               
Cow position:
               
chr1:100706244-100705935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr1:16961894-16962212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr1:19466169-19465864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
123, 16
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr1:43447731-43448021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
175, 57
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr1:78809994-78809685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
84, 146
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr1:88618714-88618395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
65, 132
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr1:98594683-98594372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
72, 124
               

               
Conread position:
               
29-397
               

               
Cow position:
               
chr1:84240998-84240628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 34
               

               
Conread position:
               
29-407
               

               
Cow position:
               
chr1:52435390-52434986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
84, 118
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr1:8349206-8349594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
16, 135
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr1:35162528-35162119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 142
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr1:54199277-54199665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr1:61391673-61392078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 19
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr1:96365776-96365389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr1:97232078-97231691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
66, 132
               

               
Conread position:
               
29-415
               

               
Cow position:
               
chr1:8733-8333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
72, 177
               

               
Conread position:
               
30-224
               

               
Cow position:
               
chr1:48769919-48769717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
65, 127
               

               
Conread position:
               
30-265
               

               
Cow position:
               
chr1:42868823-42869063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
67, 127
               

               
Conread position:
               
30-276
               

               
Cow position:
               
chr1:30047486-30047732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 55
               

               
Conread position:
               
30-306
               

               
Cow position:
               
chr1:24876379-24876097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 125
               

               
Conread position:
               
30-379
               

               
Cow position:
               
chr1:93810546-93810189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
67, 140
               

               
Conread position:
               
30-395
               

               
Cow position:
               
chr1:21130997-21131356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
31-249
               

               
Cow position:
               
chr1:43822515-43822291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
75, 127
               

               
Conread position:
               
31-336
               

               
Cow position:
               
chr1:70380027-70380344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 125
               

               
Conread position:
               
31-336
               

               
Cow position:
               
chr1:73761245-73761550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
11, 5
               

               
Conread position:
               
31-338
               

               
Cow position:
               
chr1:89498062-89497765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
55, 66
               

               
Conread position:
               
31-381
               

               
Cow position:
               
chr1:68826796-68827161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 123
               

               
Conread position:
               
31-406
               

               
Cow position:
               
chr1:53495577-53495181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
31-407
               

               
Cow position:
               
chr1:72285952-72286331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
77, 154
               

               
Conread position:
               
31-410
               

               
Cow position:
               
chr1:69539807-69539412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 83
               

               
Conread position:
               
32-407
               

               
Cow position:
               
chr1:37309404-37309790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
58, 129
               

               
Conread position:
               
33-410
               

               
Cow position:
               
chr1:41056792-41056399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
65, 172
               

               
Conread position:
               
34-269
               

               
Cow position:
               
chr1:64572628-64572382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
61, 127
               

               
Conread position:
               
34-334
               

               
Cow position:
               
chr1:19481969-19482269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
34-336
               

               
Cow position:
               
chr1:41697168-41696856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
64, 139
               

               
Conread position:
               
34-381
               

               
Cow position:
               
chr1:38401912-38401553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 127
               

               
Conread position:
               
34-396
               

               
Cow position:
               
chr1:97954355-97954719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 69
               

               
Conread position:
               
34-405
               

               
Cow position:
               
chr1:42873837-42874227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
64, 135
               

               
Conread position:
               
34-409
               

               
Cow position:
               
chr1:91039061-91039443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
64, 124
               

               
Conread position:
               
34-410
               

               
Cow position:
               
chr1:45288759-45289156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
34-410
               

               
Cow position:
               
chr1:67821110-67821503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
34-425
               

               
Cow position:
               
chr1:68845376-68845778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
36-410
               

               
Cow position:
               
chr1:26702096-26702482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 122
               

               
Conread position:
               
37-249
               

               
Cow position:
               
chr1:61542809-61543029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
60, 123
               

               
Conread position:
               
37-303
               

               
Cow position:
               
chr1:4691698-4691429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
60, 117
               

               
Conread position:
               
37-308
               

               
Cow position:
               
chr1:12978792-12978509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 123
               

               
Conread position:
               
37-330
               

               
Cow position:
               
chr1:83072551-83072251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 123
               

               
Conread position:
               
37-334
               

               
Cow position:
               
chr1:64250942-64251248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 173
               

               
Conread position:
               
37-336
               

               
Cow position:
               
chr1:10063871-10064177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
37-336
               

               
Cow position:
               
chr1:44125528-44125838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 252
               

               
Conread position:
               
37-410
               

               
Cow position:
               
chr1:7350658-7350253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
61, 130
               

               
Conread position:
               
37-410
               

               
Cow position:
               
chr1:89350075-89349692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
60, 123
               

               
Conread position:
               
38-232
               

               
Cow position:
               
chr1:22943919-22944120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
59, 120
               

               
Conread position:
               
38-336
               

               
Cow position:
               
chr1:101634821-101634503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
59, 108
               

               
Conread position:
               
38-410
               

               
Cow position:
               
chr1:94212335-94211949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
39-336
               

               
Cow position:
               
chr1:81868622-81868924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
40-336
               

               
Cow position:
               
chr1:4414102-4414406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
49, 144
               

               
Conread position:
               
40-379
               

               
Cow position:
               
chr1:6166347-6165997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
60, 154
               

               
Conread position:
               
40-395
               

               
Cow position:
               
chr1:64678802-64678427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
111, 74
               

               
Conread position:
               
40-410
               

               
Cow position:
               
chr1:20205134-20204740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
40-410
               

               
Cow position:
               
chr1:81355596-81355988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 123
               

               
Conread position:
               
41-410
               

               
Cow position:
               
chr1:3456956-3456587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
292, 61
               

               
Conread position:
               
42-334
               

               
Cow position:
               
chr1:62291596-62291882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
56, 117
               

               
Conread position:
               
42-410
               

               
Cow position:
               
chr1:15050440-15050077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
43-333
               

               
Cow position:
               
chr1:57637461-57637177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 72
               

               
Conread position:
               
43-336
               

               
Cow position:
               
chr1:56635202-56634900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
58, 109
               

               
Conread position:
               
44-306
               

               
Cow position:
               
chr1:87212036-87211777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
107, 70
               

               
Conread position:
               
45-410
               

               
Cow position:
               
chr1:53425279-53424907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
51, 117
               

               
Conread position:
               
47-358
               

               
Cow position:
               
chr1:43703509-43703191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
48-409
               

               
Cow position:
               
chr1:84456895-84456553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
49, 74
               

               
Conread position:
               
48-410
               

               
Cow position:
               
chr1:68276510-68276122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
49-386
               

               
Cow position:
               
chr1:55146896-55146538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
104, 37
               

               
Conread position:
               
50-410
               

               
Cow position:
               
chr1:90641125-90640740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
51-306
               

               
Cow position:
               
chr1:541889-541639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
51-336
               

               
Cow position:
               
chr1:51531847-51531575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
134, 57
               

               
Conread position:
               
53-333
               

               
Cow position:
               
chr1:92963489-92963203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
48, 78
               

               
Conread position:
               
53-404
               

               
Cow position:
               
chr1:40600139-40599773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
45, 107
               

               
Conread position:
               
54-294
               

               
Cow position:
               
chr1:69540375-69540144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
42, 101
               

               
Conread position:
               
54-333
               

               
Cow position:
               
chr1:58825634-58825353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 155
               

               
Conread position:
               
54-336
               

               
Cow position:
               
chr1:7142758-7143047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
56-299
               

               
Cow position:
               
chr1:70026254-70026505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
59-334
               

               
Cow position:
               
chr1:85597026-85596748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
59-410
               

               
Cow position:
               
chr1:68217278-68217645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 117
               

               
Conread position:
               
61-230
               

               
Cow position:
               
chr1:72684778-72684604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
61-302
               

               
Cow position:
               
chr1:5161968-5162214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
61-379
               

               
Cow position:
               
chr1:57263920-57264240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
61-410
               

               
Cow position:
               
chr1:31190025-31190389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
64-355
               

               
Cow position:
               
chr1:46030278-46030570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 48
               

               
Conread position:
               
65-336
               

               
Cow position:
               
chr1:31413890-31414157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
65-415
               

               
Cow position:
               
chr1:98563230-98562871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
243, 31
               

               
Conread position:
               
66-251
               

               
Cow position:
               
chr1:55819132-55818946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
69-410
               

               
Cow position:
               
chr1:73561583-73561934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
78-406
               

               
Cow position:
               
chr1:35170396-35170056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
79-335
               

               
Cow position:
               
chr1:100552024-100551773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
175, 6
               

               
Conread position:
               
80-410
               

               
Cow position:
               
chr1:11226193-11226530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
152, 16
               

               
Conread position:
               
82-336
               

               
Cow position:
               
chr1:1403426-1403670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
83-336
               

               
Cow position:
               
chr1:57639465-57639719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
108, 13
               

               
Conread position:
               
83-410
               

               
Cow position:
               
chr1:12222557-12222890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
167, 14
               

               
Conread position:
               
83-410
               

               
Cow position:
               
chr1:63596004-63596346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
86-402
               

               
Cow position:
               
chr1:61723971-61724302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
84, 62
               

               
Conread position:
               
87-288
               

               
Cow position:
               
chr1:70312761-70312955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
88-336
               

               
Cow position:
               
chr1:71953123-71952889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
90-333
               

               
Cow position:
               
chr1:100393119-100393360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
91-279
               

               
Cow position:
               
chr1:63038287-63038100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
91-302
               

               
Cow position:
               
chr1:95558079-95557872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
157, 5
               

               
Conread position:
               
91-304
               

               
Cow position:
               
chr1:91834267-91834061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 59
               

               
Conread position:
               
91-309
               

               
Cow position:
               
chr1:95178996-95178784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
151, 5
               

               
Conread position:
               
91-334
               

               
Cow position:
               
chr1:15691378-15691141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 53
               

               
Conread position:
               
91-410
               

               
Cow position:
               
chr1:11853643-11853975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
160, 5
               

               
Conread position:
               
92-277
               

               
Cow position:
               
chr1:48696730-48696904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
93-272
               

               
Cow position:
               
chr1:5023721-5023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
93-276
               

               
Cow position:
               
chr1:93228566-93228387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
174, 56
               

               
Conread position:
               
93-280
               

               
Cow position:
               
chr1:87440509-87440326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 54
               

               
Conread position:
               
93-291
               

               
Cow position:
               
chr1:86682519-86682716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
135, 76
               

               
Conread position:
               
93-293
               

               
Cow position:
               
chr1:101946673-101946862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
93-304
               

               
Cow position:
               
chr1:15169292-15169501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
166, 56
               

               
Conread position:
               
93-322
               

               
Cow position:
               
chr1:99039314-99039537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
93-332
               

               
Cow position:
               
chr1:81563786-81563538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 48
               

               
Conread position:
               
93-333
               

               
Cow position:
               
chr1:45535748-45535506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
211, 56
               

               
Conread position:
               
93-333
               

               
Cow position:
               
chr1:57635503-57635271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
219, 56
               

               
Conread position:
               
93-335
               

               
Cow position:
               
chr1:91800558-91800803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
68, 56
               

               
Conread position:
               
93-336
               

               
Cow position:
               
chr1:55135871-55135635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
93-336
               

               
Cow position:
               
chr1:62920209-62919978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
93-336
               

               
Cow position:
               
chr1:68951668-68951433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
93-336
               

               
Cow position:
               
chr1:80900161-80899909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
166, 54
               

               
Conread position:
               
93-336
               

               
Cow position:
               
chr1:95654672-95654914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
197, 56
               

               
Conread position:
               
93-337
               

               
Cow position:
               
chr1:98311111-98310862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 56
               

               
Conread position:
               
93-344
               

               
Cow position:
               
chr1:24542529-24542788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
61, 45
               

               
Conread position:
               
93-362
               

               
Cow position:
               
chr1:57297523-57297255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
72, 181
               

               
Conread position:
               
93-395
               

               
Cow position:
               
chr1:61735394-61735709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
72, 54
               

               
Conread position:
               
93-407
               

               
Cow position:
               
chr1:24235478-24235800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
93-410
               

               
Cow position:
               
chr1:1802177-1801862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
158, 14
               

               
Conread position:
               
93-410
               

               
Cow position:
               
chr1:51968503-51968185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
224, 31
               

               
Conread position:
               
93-410
               

               
Cow position:
               
chr1:92434041-92433735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
181, 40
               

               
Conread position:
               
93-410
               

               
Cow position:
               
chr1:99136389-99136715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
245, 42
               

               
Conread position:
               
94-291
               

               
Cow position:
               
chr1:3657320-3657513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 57
               

               
Conread position:
               
94-335
               

               
Cow position:
               
chr1:3244893-3244653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
94-379
               

               
Cow position:
               
chr1:6941499-6941212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
94-379
               

               
Cow position:
               
chr1:6958912-6958625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
95-329
               

               
Cow position:
               
chr1:13810686-13810457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
209, 52
               

               
Conread position:
               
96-232
               

               
Cow position:
               
chr1:47790624-47790760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
96-248
               

               
Cow position:
               
chr1:92989628-92989479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
96-258
               

               
Cow position:
               
chr1:22394841-22394674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
96-284
               

               
Cow position:
               
chr1:89785948-89785766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
96-289
               

               
Cow position:
               
chr1:23186760-23186948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 78
               

               
Conread position:
               
96-291
               

               
Cow position:
               
chr1:7609658-7609461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
62, 54
               

               
Conread position:
               
96-291
               

               
Cow position:
               
chr1:62519401-62519204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
53, 28
               

               
Conread position:
               
96-294
               

               
Cow position:
               
chr1:14308994-14309194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
149, 51
               

               
Conread position:
               
96-294
               

               
Cow position:
               
chr1:33409587-33409784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
69, 52
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr1:25387091-25386887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr1:38753961-38753753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
155, 53
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr1:50345584-50345382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
44, 55
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr1:57880746-57880953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr1:70028618-70028418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr1:75347663-75347456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr1:89508587-89508392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr1:90423044-90423246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
96-309
               

               
Cow position:
               
chr1:31607850-31608065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
58, 183
               

               
Conread position:
               
96-309
               

               
Cow position:
               
chr1:73196193-73196402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
120, 53
               

               
Conread position:
               
96-318
               

               
Cow position:
               
chr1:74947079-74947301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 53
               

               
Conread position:
               
96-324
               

               
Cow position:
               
chr1:42398153-42398383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
149, 81
               

               
Conread position:
               
96-330
               

               
Cow position:
               
chr1:79278408-79278638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
96-330
               

               
Cow position:
               
chr1:86279451-86279222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
149, 28
               

               
Conread position:
               
96-331
               

               
Cow position:
               
chr1:93110578-93110815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 55
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chr1:10655520-10655282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
149, 61
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chr1:71643625-71643859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
154, 53
               

               
Conread position:
               
96-334
               

               
Cow position:
               
chr1:21577847-21577608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
96-334
               

               
Cow position:
               
chr1:63138879-63138642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
149, 51
               

               
Conread position:
               
96-335
               

               
Cow position:
               
chr1:78092075-78091839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
149, 51
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:3429471-3429706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
45, 53
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:7186826-7186589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:10942056-10942290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:10964330-10964096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:24728802-24729038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:26729756-26729529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:31390551-31390783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:42138896-42138668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
149, 52
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:46839643-46839396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:57395898-57396125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
155, 42
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:60707441-60707205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:71136191-71135954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:76096477-76096241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:78791266-78791504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
74, 44
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:96478738-96478497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 52
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:99512227-99512451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
216, 53
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:101867388-101867157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 108
               

               
Conread position:
               
96-337
               

               
Cow position:
               
chr1:1916189-1916434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
112, 51
               

               
Conread position:
               
96-340
               

               
Cow position:
               
chr1:10719440-10719687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 54
               

               
Conread position:
               
96-341
               

               
Cow position:
               
chr1:12870971-12871210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
96-341
               

               
Cow position:
               
chr1:21934135-21934375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
79, 57
               

               
Conread position:
               
96-341
               

               
Cow position:
               
chr1:84906025-84906271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
96-345
               

               
Cow position:
               
chr1:51654462-51654203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
96-345
               

               
Cow position:
               
chr1:82443416-82443663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 51
               

               
Conread position:
               
96-360
               

               
Cow position:
               
chr1:69127128-69127383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 59
               

               
Conread position:
               
96-370
               

               
Cow position:
               
chr1:100324711-100324971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
205, 35
               

               
Conread position:
               
96-371
               

               
Cow position:
               
chr1:89485618-89485345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
96-381
               

               
Cow position:
               
chr1:100421863-100421587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
242, 50
               

               
Conread position:
               
96-382
               

               
Cow position:
               
chr1:42555304-42555013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
149, 81
               

               
Conread position:
               
96-382
               

               
Cow position:
               
chr1:73584371-73584659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
216, 51
               

               
Conread position:
               
96-395
               

               
Cow position:
               
chr1:41735581-41735895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
79, 128
               

               
Conread position:
               
96-396
               

               
Cow position:
               
chr1:43379986-43380300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
146, 72
               

               
Conread position:
               
96-396
               

               
Cow position:
               
chr1:61351182-61350876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
154, 62
               

               
Conread position:
               
96-397
               

               
Cow position:
               
chr1:44769071-44769381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
65, 32
               

               
Conread position:
               
96-399
               

               
Cow position:
               
chr1:16855661-16855962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
242, 53
               

               
Conread position:
               
96-406
               

               
Cow position:
               
chr1:63601502-63601809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
154, 71
               

               
Conread position:
               
96-406
               

               
Cow position:
               
chr1:102647235-102647550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
115, 53
               

               
Conread position:
               
96-407
               

               
Cow position:
               
chr1:635232-634909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
149, 51
               

               
Conread position:
               
96-407
               

               
Cow position:
               
chr1:31765336-31765677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 86
               

               
Conread position:
               
96-408
               

               
Cow position:
               
chr1:60907415-60907078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
117, 73
               

               
Conread position:
               
96-409
               

               
Cow position:
               
chr1:3323906-3323570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
121, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:1991381-1991715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:4573558-4573248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
188, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:5623514-5623834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 50
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:21508431-21508106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:22448543-22448869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:31348399-31348717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
155, 81
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:31499662-31499342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:34300513-34300833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 51
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:41181883-41181556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
176, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:42256464-42256795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
90, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:45007504-45007181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 60
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:48444156-48444463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
78, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:50671119-50670791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:51981260-51980942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
189, 51
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:52329480-52329813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 188
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:52753122-52753451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
48, 97
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:60032561-60032883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
154, 61
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:63390729-63391057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
46, 55
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:77620584-77620261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
208, 51
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:84283111-84282776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
149, 42
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:89741962-89742297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
149, 61
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:91816733-91817056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
212, 51
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr1:102756395-102756706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
149, 37
               

               
Conread position:
               
97-232
               

               
Cow position:
               
chr1:71665895-71666027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
63, 51
               

               
Conread position:
               
97-336
               

               
Cow position:
               
chr1:6304827-6305067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
153, 54
               

               
Conread position:
               
97-336
               

               
Cow position:
               
chr1:98372669-98372430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
157, 52
               

               
Conread position:
               
97-395
               

               
Cow position:
               
chr1:55163956-55163652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
67, 52
               

               
Conread position:
               
98-263
               

               
Cow position:
               
chr1:8984646-8984810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
98-283
               

               
Cow position:
               
chr1:6228548-6228730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
98-302
               

               
Cow position:
               
chr1:9470362-9470562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
98-306
               

               
Cow position:
               
chr1:20000712-20000920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
190, 106
               

               
Conread position:
               
98-333
               

               
Cow position:
               
chr1:6788247-6788485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
194, 74
               

               
Conread position:
               
98-338
               

               
Cow position:
               
chr1:47009069-47008830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
195, 51
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr1:29626876-29627200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
133, 65
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr1:85151145-85151464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
152, 50
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr1:88652668-88652346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 50
               

               
Conread position:
               
98-411
               

               
Cow position:
               
chr1:4374301-4374624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 51
               

               
Conread position:
               
98-414
               

               
Cow position:
               
chr1:13547949-13548279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
152, 50
               

               
Conread position:
               
99-336
               

               
Cow position:
               
chr1:24597691-24597454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
99-354
               

               
Cow position:
               
chr1:771789-772038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
150, 50
               

               
Conread position:
               
100-249
               

               
Cow position:
               
chr1:71716544-71716399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 9
               

               
Conread position:
               
100-306
               

               
Cow position:
               
chr1:8869625-8869828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
100-333
               

               
Cow position:
               
chr1:6794887-6795129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr1:20002194-20002434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 187
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr1:31234897-31235130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
145, 49
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr1:32341174-32341406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
204, 24
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr1:69415675-69415916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr1:80764501-80764733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 50
               

               
Conread position:
               
100-379
               

               
Cow position:
               
chr1:32244361-32244653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
100-381
               

               
Cow position:
               
chr1:102825785-102826069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
145, 14
               

               
Conread position:
               
100-386
               

               
Cow position:
               
chr1:68445775-68446056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
100-410
               

               
Cow position:
               
chr1:3751904-3752228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
142, 49
               

               
Conread position:
               
100-410
               

               
Cow position:
               
chr1:30034567-30034264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
152, 47
               

               
Conread position:
               
100-410
               

               
Cow position:
               
chr1:55260400-55260715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
149, 26
               

               
Conread position:
               
100-410
               

               
Cow position:
               
chr1:100770719-100771019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
151, 49
               

               
Conread position:
               
101-302
               

               
Cow position:
               
chr1:31871462-31871260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
101-334
               

               
Cow position:
               
chr1:100512642-100512399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
101-335
               

               
Cow position:
               
chr1:72103883-72103649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
144, 57
               

               
Conread position:
               
101-336
               

               
Cow position:
               
chr1:43357977-43358213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
144, 46
               

               
Conread position:
               
101-344
               

               
Cow position:
               
chr1:81471166-81470924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
203, 37
               

               
Conread position:
               
102-302
               

               
Cow position:
               
chr1:19568883-19568688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
63, 39
               

               
Conread position:
               
102-335
               

               
Cow position:
               
chr1:68996212-68995974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
138, 47
               

               
Conread position:
               
102-336
               

               
Cow position:
               
chr1:57247467-57247239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
102-361
               

               
Cow position:
               
chr1:61742429-61742688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
149, 46
               

               
Conread position:
               
102-395
               

               
Cow position:
               
chr1:44155281-44154992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
59, 45
               

               
Conread position:
               
102-410
               

               
Cow position:
               
chr1:101551496-101551172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
64, 109
               

               
Conread position:
               
103-292
               

               
Cow position:
               
chr1:51684838-51684649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
103-305
               

               
Cow position:
               
chr1:24445596-24445794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
72, 46
               

               
Conread position:
               
103-322
               

               
Cow position:
               
chr1:3243967-3243754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
145, 46
               

               
Conread position:
               
103-334
               

               
Cow position:
               
chr1:71818432-71818658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
201, 8
               

               
Conread position:
               
103-410
               

               
Cow position:
               
chr1:66355682-66355994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
103-410
               

               
Cow position:
               
chr1:76222657-76222976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
92, 44
               

               
Conread position:
               
103-410
               

               
Cow position:
               
chr1:82505007-82504682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
104-335
               

               
Cow position:
               
chr1:79663643-79663863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
196, 45
               

               
Conread position:
               
104-352
               

               
Cow position:
               
chr1:34767354-34767113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
104-382
               

               
Cow position:
               
chr1:90864263-90864557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
136, 43
               

               
Conread position:
               
105-335
               

               
Cow position:
               
chr1:64421360-64421133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
149, 44
               

               
Conread position:
               
105-336
               

               
Cow position:
               
chr1:11770263-11770492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
136, 44
               

               
Conread position:
               
106-337
               

               
Cow position:
               
chr1:5409588-5409813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 7
               

               
Conread position:
               
106-410
               

               
Cow position:
               
chr1:86512158-86511876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 5
               

               
Conread position:
               
107-410
               

               
Cow position:
               
chr1:96183990-96184293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
181, 36
               

               
Conread position:
               
107-414
               

               
Cow position:
               
chr1:97284346-97284665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
108-382
               

               
Cow position:
               
chr1:38544438-38544704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
187, 41
               

               
Conread position:
               
109-329
               

               
Cow position:
               
chr1:24413476-24413248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 38
               

               
Conread position:
               
110-302
               

               
Cow position:
               
chr1:51770111-51769923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
140, 52
               

               
Conread position:
               
110-336
               

               
Cow position:
               
chr1:44165110-44164880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 39
               

               
Conread position:
               
110-336
               

               
Cow position:
               
chr1:53540415-53540192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
110-336
               

               
Cow position:
               
chr1:56748625-56748391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
110-410
               

               
Cow position:
               
chr1:5872943-5873258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 69
               

               
Conread position:
               
110-410
               

               
Cow position:
               
chr1:20384595-20384910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
176, 57
               

               
Conread position:
               
110-410
               

               
Cow position:
               
chr1:78783572-78783261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
141, 39
               

               
Conread position:
               
111-330
               

               
Cow position:
               
chr1:83593785-83594000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
134, 38
               

               
Conread position:
               
111-336
               

               
Cow position:
               
chr1:63905451-63905672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
193, 38
               

               
Conread position:
               
111-406
               

               
Cow position:
               
chr1:11873338-11873636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
223, 38
               

               
Conread position:
               
111-410
               

               
Cow position:
               
chr1:666389-666075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
140, 36
               

               
Conread position:
               
112-248
               

               
Cow position:
               
chr1:80942570-80942437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
112-288
               

               
Cow position:
               
chr1:100812553-100812720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
134, 37
               

               
Conread position:
               
112-294
               

               
Cow position:
               
chr1:12989074-12988891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
56, 115
               

               
Conread position:
               
112-306
               

               
Cow position:
               
chr1:81638427-81638234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
139, 37
               

               
Conread position:
               
112-333
               

               
Cow position:
               
chr1:58419958-58419737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
138, 37
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr1:41954219-41954452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
133, 205
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr1:78794714-78794934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
39, 101
               

               
Conread position:
               
112-338
               

               
Cow position:
               
chr1:50679257-50679486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
32, 65
               

               
Conread position:
               
112-340
               

               
Cow position:
               
chr1:81472893-81472677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
137, 37
               

               
Conread position:
               
112-394
               

               
Cow position:
               
chr1:99095385-99095096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
138, 9
               

               
Conread position:
               
112-408
               

               
Cow position:
               
chr1:61725092-61725396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
178, 37
               

               
Conread position:
               
112-410
               

               
Cow position:
               
chr1:33811952-33811649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
192, 37
               

               
Conread position:
               
114-337
               

               
Cow position:
               
chr1:51818962-51818742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
136, 49
               

               
Conread position:
               
114-369
               

               
Cow position:
               
chr1:98557764-98558019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
137, 44
               

               
Conread position:
               
114-379
               

               
Cow position:
               
chr1:29900945-29901211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 105
               

               
Conread position:
               
115-288
               

               
Cow position:
               
chr1:78184716-78184536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
115-293
               

               
Cow position:
               
chr1:85826366-85826191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
115-333
               

               
Cow position:
               
chr1:78154704-78154920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
135, 52
               

               
Conread position:
               
115-402
               

               
Cow position:
               
chr1:101007601-101007892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
135, 34
               

               
Conread position:
               
115-410
               

               
Cow position:
               
chr1:71946351-71946655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
116-336
               

               
Cow position:
               
chr1:3340956-3340739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
188, 52
               

               
Conread position:
               
116-336
               

               
Cow position:
               
chr1:3776601-3776812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
143, 32
               

               
Conread position:
               
117-336
               

               
Cow position:
               
chr1:94404231-94404018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
123-336
               

               
Cow position:
               
chr1:57900730-57900939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
185, 40
               

               
Conread position:
               
123-336
               

               
Cow position:
               
chr1:95050076-95050298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
123-370
               

               
Cow position:
               
chr1:75967442-75967191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
181, 31
               

               
Conread position:
               
123-385
               

               
Cow position:
               
chr1:12595890-12596161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 47
               

               
Conread position:
               
123-406
               

               
Cow position:
               
chr1:22467948-22467647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
124-299
               

               
Cow position:
               
chr1:14528184-14528357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
124-410
               

               
Cow position:
               
chr1:9443836-9444125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
103, 51
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr1:32013961-32013760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr1:89437931-89438132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
127-336
               

               
Cow position:
               
chr1:4294064-4293864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
128-336
               

               
Cow position:
               
chr1:3034979-3035191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
128-410
               

               
Cow position:
               
chr1:41004354-41004652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
41, 26
               

               
Conread position:
               
131-410
               

               
Cow position:
               
chr1:91142153-91142440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
118, 18
               

               
Conread position:
               
133-336
               

               
Cow position:
               
chr1:45673716-45673513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 152
               

               
Conread position:
               
138-333
               

               
Cow position:
               
chr1:81277201-81277397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 148
               

               
Conread position:
               
140-410
               

               
Cow position:
               
chr1:27495482-27495211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
172, 32
               

               
Conread position:
               
142-336
               

               
Cow position:
               
chr1:24655957-24655761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
145-336
               

               
Cow position:
               
chr1:20288113-20287916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
145-407
               

               
Cow position:
               
chr1:84170472-84170220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
10, 73
               

               
Conread position:
               
147-310
               

               
Cow position:
               
chr1:73536728-73536570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
147-409
               

               
Cow position:
               
chr1:81859237-81859511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
103, 69
               

               
Conread position:
               
148-407
               

               
Cow position:
               
chr1:77099563-77099822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
142, 19
               

               
Conread position:
               
150-336
               

               
Cow position:
               
chr1:14379549-14379728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
150-386
               

               
Cow position:
               
chr1:84116379-84116141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
151-336
               

               
Cow position:
               
chr1:87216445-87216264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
151-387
               

               
Cow position:
               
chr1:77658056-77657804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 5
               

               
Conread position:
               
152-338
               

               
Cow position:
               
chr1:25119045-25119222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
152-410
               

               
Cow position:
               
chr1:69940983-69941250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 6
               

               
Conread position:
               
153-406
               

               
Cow position:
               
chr1:53595306-53595044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 92
               

               
Conread position:
               
154-414
               

               
Cow position:
               
chr1:78689920-78689644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
155-302
               

               
Cow position:
               
chr1:100745590-100745442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 20
               

               
Conread position:
               
155-324
               

               
Cow position:
               
chr1:89083092-89082921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
135, 23
               

               
Conread position:
               
155-330
               

               
Cow position:
               
chr1:102113120-102113301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
155-336
               

               
Cow position:
               
chr1:101207807-101207634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
157-379
               

               
Cow position:
               
chr1:53613216-53613435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
158-303
               

               
Cow position:
               
chr1:32596438-32596288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
160-336
               

               
Cow position:
               
chr1:37646022-37646198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
160-377
               

               
Cow position:
               
chr1:81363967-81363742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
163-332
               

               
Cow position:
               
chr1:98619185-98619011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
82, 5
               

               
Conread position:
               
163-336
               

               
Cow position:
               
chr1:1185712-1185541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
82, 34
               

               
Conread position:
               
163-336
               

               
Cow position:
               
chr1:32631435-32631268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
88, 12
               

               
Conread position:
               
163-336
               

               
Cow position:
               
chr1:81179997-81180178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
163-381
               

               
Cow position:
               
chr1:19998067-19998291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
171, 14
               

               
Conread position:
               
163-410
               

               
Cow position:
               
chr1:15311843-15311583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
163-410
               

               
Cow position:
               
chr1:79591081-79590815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
163-410
               

               
Cow position:
               
chr1:85361834-85361570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
82, 6
               

               
Conread position:
               
163-414
               

               
Cow position:
               
chr1:31846001-31845745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
164-289
               

               
Cow position:
               
chr1:72422599-72422724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
164-336
               

               
Cow position:
               
chr1:51628525-51628700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
140, 80
               

               
Conread position:
               
165-336
               

               
Cow position:
               
chr1:49753901-49753732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
166-410
               

               
Cow position:
               
chr1:34000884-34000620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
167-302
               

               
Cow position:
               
chr1:31960197-31960060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
167-410
               

               
Cow position:
               
chr1:68282774-68282509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
168-394
               

               
Cow position:
               
chr1:61241169-61240947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 59
               

               
Conread position:
               
168-409
               

               
Cow position:
               
chr1:71748040-71748291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
169, 50
               

               
Conread position:
               
168-410
               

               
Cow position:
               
chr1:83982400-83982661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
77, 130
               

               
Conread position:
               
168-410
               

               
Cow position:
               
chr1:92370389-92370644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
136, 76
               

               
Conread position:
               
169-379
               

               
Cow position:
               
chr1:52506586-52506798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
76, 50
               

               
Conread position:
               
169-405
               

               
Cow position:
               
chr1:98708409-98708163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
166, 113
               

               
Conread position:
               
171-336
               

               
Cow position:
               
chr1:95327184-95327351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
137, 47
               

               
Conread position:
               
172-336
               

               
Cow position:
               
chr1:89395567-89395394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
172-381
               

               
Cow position:
               
chr1:97806754-97806536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
175-336
               

               
Cow position:
               
chr1:42968352-42968516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
129, 69
               

               
Conread position:
               
175-357
               

               
Cow position:
               
chr1:89729011-89729188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
175-410
               

               
Cow position:
               
chr1:89937394-89937645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
129, 69
               

               
Conread position:
               
177-361
               

               
Cow position:
               
chr1:7450091-7449911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
177-409
               

               
Cow position:
               
chr1:21093053-21092808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
127, 101
               

               
Conread position:
               
178-336
               

               
Cow position:
               
chr1:86484925-86484757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
178-410
               

               
Cow position:
               
chr1:71325288-71325532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
178-410
               

               
Cow position:
               
chr1:82861741-82861488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
179-410
               

               
Cow position:
               
chr1:57305790-57305546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
133, 65
               

               
Conread position:
               
180-336
               

               
Cow position:
               
chr1:19545141-19545298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
181-336
               

               
Cow position:
               
chr1:30504428-30504272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
123, 90
               

               
Conread position:
               
182-410
               

               
Cow position:
               
chr1:36613319-36613560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
187-410
               

               
Cow position:
               
chr1:43893876-43893643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
125, 59
               

               
Conread position:
               
188-336
               

               
Cow position:
               
chr1:39702771-39702632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
189-377
               

               
Cow position:
               
chr1:64160289-64160089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 92
               

               
Conread position:
               
200-333
               

               
Cow position:
               
chr1:10030476-10030344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
112, 46
               

               
Conread position:
               
200-397
               

               
Cow position:
               
chr1:55686279-55686491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
204-336
               

               
Cow position:
               
chr1:3757890-3757754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 108
               

               
Conread position:
               
205-336
               

               
Cow position:
               
chr1:98577409-98577279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
107, 11
               

               
Conread position:
               
208-429
               

               
Cow position:
               
chr1:21993666-21993889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
42, 207
               

               
Conread position:
               
227-336
               

               
Cow position:
               
chr1:62996405-62996296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-410
               

               
Cow position:
               
chr1:55020371-55020202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
58, 87
               
Show alignments to all cow chromosomes.