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Cow genome map

           
Conread name:
           
Mixc-0034c10
        

               
Conread position:
               
1-276
               

               
Cow position:
               
chr21:47246-46956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr21:27810591-27810278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
303, 106
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr21:17184119-17183782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 24
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr21:25383231-25382868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr21:3585165-3585581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 28
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:32297309-32297730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 120
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr21:2658010-2657708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
2-334
               

               
Cow position:
               
chr21:33924-33582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 162
               

               
Conread position:
               
2-428
               

               
Cow position:
               
chr21:40168423-40168854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 157
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr21:36508436-36508241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
94, 154
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr21:742477-742266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 24
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr21:1511489-1511219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
98, 12
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr21:40266327-40266049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
23, 159
               

               
Conread position:
               
3-333
               

               
Cow position:
               
chr21:41590363-41590695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
94, 157
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr21:7824987-7825317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 103
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr21:11644763-11645110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr21:29978561-29978903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 16
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr21:36763265-36762838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
28, 291
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr21:28733707-28734140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 162
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr21:33982611-33983038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr21:39403325-39403766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr21:5464949-5464693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 126
               

               
Conread position:
               
4-302
               

               
Cow position:
               
chr21:9477366-9477055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 158
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr21:10001274-10000939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
4-382
               

               
Cow position:
               
chr21:27521139-27521525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
97, 89
               

               
Conread position:
               
4-395
               

               
Cow position:
               
chr21:23535910-23535500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
46, 51
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr21:41522215-41522455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 115
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr21:36910131-36909860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr21:13089272-13089609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
24, 169
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr21:13365540-13365203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
92, 10
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr21:13738748-13738426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
92, 13
               

               
Conread position:
               
5-406
               

               
Cow position:
               
chr21:13898367-13897969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
5-406
               

               
Cow position:
               
chr21:44825687-44826100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
6-175
               

               
Cow position:
               
chr21:42463495-42463669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 149
               

               
Conread position:
               
6-195
               

               
Cow position:
               
chr21:8545824-8546018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
95, 150
               

               
Conread position:
               
6-197
               

               
Cow position:
               
chr21:46132770-46132573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
95, 11
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr21:19514051-19513818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 12
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr21:21907238-21907482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr21:47363534-47363792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 159
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chr21:37014229-37014484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
6-302
               

               
Cow position:
               
chr21:30256075-30256377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
6-332
               

               
Cow position:
               
chr21:37299661-37299332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
91, 151
               

               
Conread position:
               
6-334
               

               
Cow position:
               
chr21:32339541-32339876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 153
               

               
Conread position:
               
6-334
               

               
Cow position:
               
chr21:37344903-37345241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
91, 13
               

               
Conread position:
               
6-335
               

               
Cow position:
               
chr21:10264231-10263900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
6-335
               

               
Cow position:
               
chr21:18790367-18790696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 132
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr21:10004687-10005027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 154
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr21:10633442-10633782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr21:17193552-17193901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr21:21169297-21169636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
95, 149
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr21:36795808-36795462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 183
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr21:42007263-42007601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
87, 126
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr21:42841398-42841734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
83, 177
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr21:47763919-47764254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
141, 61
               

               
Conread position:
               
6-379
               

               
Cow position:
               
chr21:12801550-12801943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
6-395
               

               
Cow position:
               
chr21:42384708-42384292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 156
               

               
Conread position:
               
6-406
               

               
Cow position:
               
chr21:13127900-13128318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
67, 53
               

               
Conread position:
               
6-407
               

               
Cow position:
               
chr21:27568975-27569389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr21:16696578-16696142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr21:33350940-33350517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
90, 149
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr21:33563202-33562786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 150
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr21:34010199-34010618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 34
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr21:42905199-42905603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
220, 102
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr21:46264371-46263949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
23, 181
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr21:7377726-7377985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 157
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr21:31253729-31253436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
90, 30
               

               
Conread position:
               
7-330
               

               
Cow position:
               
chr21:9990708-9990377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
90, 220
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr21:24642714-24642380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr21:26245114-26244790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
22, 156
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr21:40589283-40589624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 158
               

               
Conread position:
               
7-341
               

               
Cow position:
               
chr21:14452434-14452092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
21, 154
               

               
Conread position:
               
7-379
               

               
Cow position:
               
chr21:13584865-13585255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
144, 26
               

               
Conread position:
               
7-379
               

               
Cow position:
               
chr21:28924306-28923930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 18
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr21:15444885-15445307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 117
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr21:22718584-22719008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
17, 156
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr21:23672943-23672518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 148
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr21:49699842-49700264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
79, 151
               

               
Conread position:
               
8-224
               

               
Cow position:
               
chr21:31159594-31159373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 148
               

               
Conread position:
               
8-306
               

               
Cow position:
               
chr21:30250009-30250301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
8-410
               

               
Cow position:
               
chr21:41974181-41974607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 167
               

               
Conread position:
               
9-210
               

               
Cow position:
               
chr21:9256470-9256672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr21:17890498-17890251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
86, 158
               

               
Conread position:
               
9-276
               

               
Cow position:
               
chr21:16152637-16152350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
92, 153
               

               
Conread position:
               
9-333
               

               
Cow position:
               
chr21:3360819-3361153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
86, 125
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr21:6051699-6051366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 153
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr21:17455580-17455244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
10-386
               

               
Cow position:
               
chr21:29485173-29484780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 146
               

               
Conread position:
               
10-410
               

               
Cow position:
               
chr21:938214-937824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
10-410
               

               
Cow position:
               
chr21:24858508-24858083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
11-267
               

               
Cow position:
               
chr21:8349522-8349256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 146
               

               
Conread position:
               
11-329
               

               
Cow position:
               
chr21:42135422-42135758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
11-333
               

               
Cow position:
               
chr21:29001963-29002300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr21:38449255-38449593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 147
               

               
Conread position:
               
11-382
               

               
Cow position:
               
chr21:41579950-41579551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
11-387
               

               
Cow position:
               
chr21:19259013-19258621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 147
               

               
Conread position:
               
11-410
               

               
Cow position:
               
chr21:641781-641356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
36, 41
               

               
Conread position:
               
11-410
               

               
Cow position:
               
chr21:15545166-15545593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
11-410
               

               
Cow position:
               
chr21:36297690-36297251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
12-410
               

               
Cow position:
               
chr21:23822344-23821940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
320, 28
               

               
Conread position:
               
12-410
               

               
Cow position:
               
chr21:27341402-27341822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
13-336
               

               
Cow position:
               
chr21:34654265-34653940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
19, 14
               

               
Conread position:
               
14-336
               

               
Cow position:
               
chr21:44565529-44565842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
15, 194
               

               
Conread position:
               
16-313
               

               
Cow position:
               
chr21:10673310-10673013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
16-336
               

               
Cow position:
               
chr21:1059265-1058935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 132
               

               
Conread position:
               
16-406
               

               
Cow position:
               
chr21:3236703-3236308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
16-410
               

               
Cow position:
               
chr21:38900963-38900545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 65
               

               
Conread position:
               
17-267
               

               
Cow position:
               
chr21:15544040-15544290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
21, 137
               

               
Conread position:
               
17-336
               

               
Cow position:
               
chr21:18064730-18065065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
55, 135
               

               
Conread position:
               
18-220
               

               
Cow position:
               
chr21:28030475-28030263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
79, 140
               

               
Conread position:
               
18-249
               

               
Cow position:
               
chr21:868738-868979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
18-259
               

               
Cow position:
               
chr21:12339810-12339575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
18-284
               

               
Cow position:
               
chr21:22210060-22210333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
18-302
               

               
Cow position:
               
chr21:30222532-30222238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
79, 142
               

               
Conread position:
               
18-333
               

               
Cow position:
               
chr21:11360213-11359899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
18-333
               

               
Cow position:
               
chr21:47464931-47465259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
16, 65
               

               
Conread position:
               
18-334
               

               
Cow position:
               
chr21:713130-712795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
18-334
               

               
Cow position:
               
chr21:10114148-10114468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
18-334
               

               
Cow position:
               
chr21:18800347-18800668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
18-335
               

               
Cow position:
               
chr21:28989801-28989472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
23, 157
               

               
Conread position:
               
18-335
               

               
Cow position:
               
chr21:45473570-45473897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
18, 151
               

               
Conread position:
               
18-335
               

               
Cow position:
               
chr21:45920873-45921199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr21:957857-957526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr21:18041680-18041984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr21:23568415-23568072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr21:23587068-23586735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 35
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr21:30592122-30592445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 9
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr21:32237467-32237156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr21:41597998-41597674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
146, 96
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr21:46848941-46849264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
133, 112
               

               
Conread position:
               
18-341
               

               
Cow position:
               
chr21:33264033-33263704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 167
               

               
Conread position:
               
18-397
               

               
Cow position:
               
chr21:45329762-45330157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
20, 146
               

               
Conread position:
               
18-406
               

               
Cow position:
               
chr21:14760752-14760360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
105, 96
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr21:82254-81842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 97
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr21:5392348-5392766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
60, 145
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr21:15976819-15976413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr21:19615363-19614945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 144
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr21:20160863-20160456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 143
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr21:23321891-23322309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 143
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr21:27863327-27863747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr21:29014721-29015117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
13, 145
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr21:44860934-44861172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
19-274
               

               
Cow position:
               
chr21:10410408-10410139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
19-287
               

               
Cow position:
               
chr21:6998133-6997846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 150
               

               
Conread position:
               
19-307
               

               
Cow position:
               
chr21:33413902-33414201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
85, 136
               

               
Conread position:
               
19-334
               

               
Cow position:
               
chr21:27624884-27624572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
19-397
               

               
Cow position:
               
chr21:5898217-5898613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
82, 10
               

               
Conread position:
               
19-410
               

               
Cow position:
               
chr21:643510-643109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
78, 136
               

               
Conread position:
               
19-410
               

               
Cow position:
               
chr21:9416435-9416014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 8
               

               
Conread position:
               
19-410
               

               
Cow position:
               
chr21:25345047-25344650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
133, 93
               

               
Conread position:
               
19-410
               

               
Cow position:
               
chr21:42413910-42414327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 145
               

               
Conread position:
               
20-262
               

               
Cow position:
               
chr21:7394564-7394314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
9, 56
               

               
Conread position:
               
20-334
               

               
Cow position:
               
chr21:31691667-31691339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr21:30848756-30849143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
76, 170
               

               
Conread position:
               
20-407
               

               
Cow position:
               
chr21:7673305-7672908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
20-410
               

               
Cow position:
               
chr21:42348511-42348906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
282, 20
               

               
Conread position:
               
21-262
               

               
Cow position:
               
chr21:2809975-2810229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 197
               

               
Conread position:
               
21-274
               

               
Cow position:
               
chr21:47713826-47714086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
21-293
               

               
Cow position:
               
chr21:8206954-8206674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
69, 49
               

               
Conread position:
               
21-294
               

               
Cow position:
               
chr21:46972965-46973230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 94
               

               
Conread position:
               
21-406
               

               
Cow position:
               
chr21:27229611-27230016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
22-291
               

               
Cow position:
               
chr21:11739937-11740212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
53, 136
               

               
Conread position:
               
22-336
               

               
Cow position:
               
chr21:32559182-32559495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
75, 141
               

               
Conread position:
               
22-410
               

               
Cow position:
               
chr21:29069143-29069556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 133
               

               
Conread position:
               
23-379
               

               
Cow position:
               
chr21:18828120-18828506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
24-406
               

               
Cow position:
               
chr21:28626418-28626017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 133
               

               
Conread position:
               
25-336
               

               
Cow position:
               
chr21:48176999-48176685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
27-229
               

               
Cow position:
               
chr21:734768-734562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
5, 61
               

               
Conread position:
               
27-287
               

               
Cow position:
               
chr21:30835542-30835270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
8, 100
               

               
Conread position:
               
27-336
               

               
Cow position:
               
chr21:28191211-28190887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
6, 132
               

               
Conread position:
               
27-371
               

               
Cow position:
               
chr21:45850528-45850899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
27-410
               

               
Cow position:
               
chr21:4399982-4399572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
11, 120
               

               
Conread position:
               
27-410
               

               
Cow position:
               
chr21:26647837-26648232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
27-410
               

               
Cow position:
               
chr21:36643068-36642679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
215, 82
               

               
Conread position:
               
28-293
               

               
Cow position:
               
chr21:41514971-41514706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
28-306
               

               
Cow position:
               
chr21:10261446-10261170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 23
               

               
Conread position:
               
28-410
               

               
Cow position:
               
chr21:11114883-11114477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
29-243
               

               
Cow position:
               
chr21:28919352-28919572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
48, 128
               

               
Conread position:
               
29-272
               

               
Cow position:
               
chr21:45262634-45262889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
65, 130
               

               
Conread position:
               
29-291
               

               
Cow position:
               
chr21:22465366-22465101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
124, 21
               

               
Conread position:
               
29-302
               

               
Cow position:
               
chr21:21077776-21077494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 120
               

               
Conread position:
               
29-325
               

               
Cow position:
               
chr21:34151758-34151450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
29-333
               

               
Cow position:
               
chr21:12461790-12462109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 133
               

               
Conread position:
               
29-334
               

               
Cow position:
               
chr21:6713347-6713662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
67, 141
               

               
Conread position:
               
29-335
               

               
Cow position:
               
chr21:48233989-48234299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
28, 94
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr21:802141-802435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
125, 86
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr21:5427113-5426802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr21:7581729-7582051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 133
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr21:18779800-18780114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr21:28244646-28244334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
75, 131
               

               
Conread position:
               
29-379
               

               
Cow position:
               
chr21:45356009-45355639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
121, 80
               

               
Conread position:
               
29-386
               

               
Cow position:
               
chr21:2927029-2927407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
29-406
               

               
Cow position:
               
chr21:44251667-44252052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 131
               

               
Conread position:
               
29-409
               

               
Cow position:
               
chr21:28429620-28429223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
68, 156
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr21:396043-395650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 131
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr21:5153796-5153389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr21:28442908-28442511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
140, 86
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr21:30990111-30990496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 73
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr21:33210364-33209971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
66, 74
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr21:44671920-44671525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
43, 73
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr21:30218030-30218271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
30-286
               

               
Cow position:
               
chr21:31090260-31090511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 119
               

               
Conread position:
               
30-378
               

               
Cow position:
               
chr21:21077484-21077133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
274, 74
               

               
Conread position:
               
30-386
               

               
Cow position:
               
chr21:41621300-41620915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
33, 37
               

               
Conread position:
               
31-214
               

               
Cow position:
               
chr21:38267888-38268064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
31-336
               

               
Cow position:
               
chr21:8235388-8235686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
66, 124
               

               
Conread position:
               
34-334
               

               
Cow position:
               
chr21:15911571-15911261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 271
               

               
Conread position:
               
34-336
               

               
Cow position:
               
chr21:28211362-28211055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 133
               

               
Conread position:
               
34-336
               

               
Cow position:
               
chr21:33791211-33791509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
142, 22
               

               
Conread position:
               
34-407
               

               
Cow position:
               
chr21:38121272-38120878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
64, 126
               

               
Conread position:
               
35-229
               

               
Cow position:
               
chr21:42209459-42209665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
62, 127
               

               
Conread position:
               
35-390
               

               
Cow position:
               
chr21:2679718-2679344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
37-283
               

               
Cow position:
               
chr21:44214294-44214039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
60, 122
               

               
Conread position:
               
37-315
               

               
Cow position:
               
chr21:30236665-30236938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
37-331
               

               
Cow position:
               
chr21:12723319-12723020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 122
               

               
Conread position:
               
38-379
               

               
Cow position:
               
chr21:28955668-28955325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
59, 116
               

               
Conread position:
               
41-291
               

               
Cow position:
               
chr21:22121667-22121426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
41-410
               

               
Cow position:
               
chr21:45915554-45915932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 117
               

               
Conread position:
               
46-410
               

               
Cow position:
               
chr21:39401749-39401372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 41
               

               
Conread position:
               
49-392
               

               
Cow position:
               
chr21:9940032-9940393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
45, 111
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chr21:17175290-17175003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
42, 37
               

               
Conread position:
               
50-410
               

               
Cow position:
               
chr21:4998340-4998713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
53-334
               

               
Cow position:
               
chr21:1591706-1591409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
44, 108
               

               
Conread position:
               
53-336
               

               
Cow position:
               
chr21:24888150-24887867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
94, 24
               

               
Conread position:
               
54-336
               

               
Cow position:
               
chr21:15611291-15611010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
47, 141
               

               
Conread position:
               
54-379
               

               
Cow position:
               
chr21:45330456-45330805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
54-410
               

               
Cow position:
               
chr21:42540071-42540448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
43, 101
               

               
Conread position:
               
55-302
               

               
Cow position:
               
chr21:22353088-22353338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
56-395
               

               
Cow position:
               
chr21:28512664-28512321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
56-406
               

               
Cow position:
               
chr21:34390826-34391194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 106
               

               
Conread position:
               
59-406
               

               
Cow position:
               
chr21:24865292-24864931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
61-355
               

               
Cow position:
               
chr21:11251013-11250708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
62-410
               

               
Cow position:
               
chr21:4795363-4794994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 88
               

               
Conread position:
               
74-263
               

               
Cow position:
               
chr21:19210831-19210646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
170, 23
               

               
Conread position:
               
80-386
               

               
Cow position:
               
chr21:8452010-8451717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
83-302
               

               
Cow position:
               
chr21:23980074-23980289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
162, 13
               

               
Conread position:
               
83-331
               

               
Cow position:
               
chr21:17875085-17875332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
167, 13
               

               
Conread position:
               
83-337
               

               
Cow position:
               
chr21:9301331-9301066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
83-410
               

               
Cow position:
               
chr21:12154241-12153905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
83-410
               

               
Cow position:
               
chr21:43357148-43357489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
84-410
               

               
Cow position:
               
chr21:45867042-45866708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
160, 63
               

               
Conread position:
               
90-333
               

               
Cow position:
               
chr21:41454846-41455089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
143, 57
               

               
Conread position:
               
91-260
               

               
Cow position:
               
chr21:22720328-22720162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
91-334
               

               
Cow position:
               
chr21:28810161-28810403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
120, 57
               

               
Conread position:
               
91-336
               

               
Cow position:
               
chr21:28443277-28443519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
66, 5
               

               
Conread position:
               
91-350
               

               
Cow position:
               
chr21:19673906-19673658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
159, 5
               

               
Conread position:
               
92-336
               

               
Cow position:
               
chr21:4276502-4276733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
208, 41
               

               
Conread position:
               
92-379
               

               
Cow position:
               
chr21:18844912-18845212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
79, 53
               

               
Conread position:
               
93-292
               

               
Cow position:
               
chr21:36789894-36789700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
65, 132
               

               
Conread position:
               
93-294
               

               
Cow position:
               
chr21:10561484-10561683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
93-301
               

               
Cow position:
               
chr21:20418583-20418791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
69, 56
               

               
Conread position:
               
93-323
               

               
Cow position:
               
chr21:20192996-20192774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 54
               

               
Conread position:
               
93-330
               

               
Cow position:
               
chr21:17856643-17856408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
69, 54
               

               
Conread position:
               
93-330
               

               
Cow position:
               
chr21:20260220-20260456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
93-332
               

               
Cow position:
               
chr21:19363360-19363601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
76, 54
               

               
Conread position:
               
93-334
               

               
Cow position:
               
chr21:13488626-13488380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
36, 55
               

               
Conread position:
               
93-336
               

               
Cow position:
               
chr21:35354630-35354396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
93-371
               

               
Cow position:
               
chr21:10601276-10601557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 71
               

               
Conread position:
               
93-379
               

               
Cow position:
               
chr21:18850122-18850417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
93-379
               

               
Cow position:
               
chr21:36756699-36756410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
158, 71
               

               
Conread position:
               
93-386
               

               
Cow position:
               
chr21:3818308-3818012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
126, 56
               

               
Conread position:
               
93-407
               

               
Cow position:
               
chr21:23149922-23150244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
93-410
               

               
Cow position:
               
chr21:16187708-16188024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
93-410
               

               
Cow position:
               
chr21:25764735-25764407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
77, 54
               

               
Conread position:
               
93-410
               

               
Cow position:
               
chr21:41878570-41878248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 56
               

               
Conread position:
               
94-334
               

               
Cow position:
               
chr21:28882235-28882003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
94-336
               

               
Cow position:
               
chr21:14464678-14464435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
123, 55
               

               
Conread position:
               
94-386
               

               
Cow position:
               
chr21:12960800-12961103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
12, 21
               

               
Conread position:
               
94-410
               

               
Cow position:
               
chr21:8351213-8351529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
213, 55
               

               
Conread position:
               
94-410
               

               
Cow position:
               
chr21:28997799-28998135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
5, 76
               

               
Conread position:
               
95-330
               

               
Cow position:
               
chr21:35569284-35569512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
95-407
               

               
Cow position:
               
chr21:5636625-5636946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
95-410
               

               
Cow position:
               
chr21:20925407-20925734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 5
               

               
Conread position:
               
95-410
               

               
Cow position:
               
chr21:23801031-23801349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
76, 51
               

               
Conread position:
               
96-261
               

               
Cow position:
               
chr21:11198052-11198215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
96-262
               

               
Cow position:
               
chr21:17929741-17929909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
155, 69
               

               
Conread position:
               
96-269
               

               
Cow position:
               
chr21:33359941-33360108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
149, 18
               

               
Conread position:
               
96-269
               

               
Cow position:
               
chr21:46552007-46552180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
149, 53
               

               
Conread position:
               
96-275
               

               
Cow position:
               
chr21:40432541-40432368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
149, 53
               

               
Conread position:
               
96-276
               

               
Cow position:
               
chr21:25800496-25800314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
96-280
               

               
Cow position:
               
chr21:9036397-9036210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 68
               

               
Conread position:
               
96-281
               

               
Cow position:
               
chr21:13495639-13495454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
144, 72
               

               
Conread position:
               
96-292
               

               
Cow position:
               
chr21:5985222-5985415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
45, 53
               

               
Conread position:
               
96-292
               

               
Cow position:
               
chr21:17009077-17008884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 51
               

               
Conread position:
               
96-292
               

               
Cow position:
               
chr21:38664735-38664541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
95, 51
               

               
Conread position:
               
96-293
               

               
Cow position:
               
chr21:2260269-2260456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
96-293
               

               
Cow position:
               
chr21:10118655-10118459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
152, 39
               

               
Conread position:
               
96-293
               

               
Cow position:
               
chr21:13713744-13713938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
96-294
               

               
Cow position:
               
chr21:32904058-32904254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 23
               

               
Conread position:
               
96-295
               

               
Cow position:
               
chr21:6017721-6017516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
96-297
               

               
Cow position:
               
chr21:37789903-37790104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
149, 51
               

               
Conread position:
               
96-301
               

               
Cow position:
               
chr21:9697984-9698193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr21:12301415-12301607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
64, 101
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr21:18155470-18155677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr21:25286613-25286406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
71, 54
               

               
Conread position:
               
96-303
               

               
Cow position:
               
chr21:18415152-18414942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chr21:10007543-10007779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
212, 51
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chr21:34739940-34739708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 58
               

               
Conread position:
               
96-334
               

               
Cow position:
               
chr21:3763646-3763877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
145, 53
               

               
Conread position:
               
96-334
               

               
Cow position:
               
chr21:6102165-6102399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
208, 52
               

               
Conread position:
               
96-334
               

               
Cow position:
               
chr21:13840423-13840183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
68, 51
               

               
Conread position:
               
96-334
               

               
Cow position:
               
chr21:18289759-18289523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
196, 66
               

               
Conread position:
               
96-334
               

               
Cow position:
               
chr21:33997131-33997361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
96-335
               

               
Cow position:
               
chr21:9873055-9872827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
96-335
               

               
Cow position:
               
chr21:29214064-29214289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr21:4281779-4282009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
150, 58
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr21:11456713-11456951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr21:19936824-19937074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
44, 159
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr21:21223378-21223148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
196, 29
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr21:30150167-30150407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 55
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr21:30606991-30607229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
152, 53
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr21:41198303-41198552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr21:46144055-46143802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
157, 53
               

               
Conread position:
               
96-337
               

               
Cow position:
               
chr21:21770223-21769982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
148, 51
               

               
Conread position:
               
96-338
               

               
Cow position:
               
chr21:40134253-40134013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
208, 53
               

               
Conread position:
               
96-345
               

               
Cow position:
               
chr21:20153052-20152798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
153, 66
               

               
Conread position:
               
96-376
               

               
Cow position:
               
chr21:24222441-24222732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 69
               

               
Conread position:
               
96-387
               

               
Cow position:
               
chr21:44515360-44515069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
143, 51
               

               
Conread position:
               
96-395
               

               
Cow position:
               
chr21:30231598-30231916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
150, 53
               

               
Conread position:
               
96-395
               

               
Cow position:
               
chr21:31662563-31662247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 60
               

               
Conread position:
               
96-396
               

               
Cow position:
               
chr21:20044668-20044984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
71, 53
               

               
Conread position:
               
96-402
               

               
Cow position:
               
chr21:15584323-15584623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 67
               

               
Conread position:
               
96-406
               

               
Cow position:
               
chr21:10151901-10151571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
45, 185
               

               
Conread position:
               
96-406
               

               
Cow position:
               
chr21:24607482-24607161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
82, 58
               

               
Conread position:
               
96-407
               

               
Cow position:
               
chr21:25281700-25282013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
216, 63
               

               
Conread position:
               
96-409
               

               
Cow position:
               
chr21:19196068-19196395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
154, 53
               

               
Conread position:
               
96-409
               

               
Cow position:
               
chr21:32536073-32535749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:724788-725118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
73, 51
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:2904382-2904690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:4189937-4189606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:4904871-4905195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 45
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:5344762-5344433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:7564211-7564550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
47, 187
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:10727373-10727053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
239, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:10967328-10967005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
154, 63
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:11227865-11228182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 72
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:11640118-11639792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
196, 62
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:13048097-13048424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
79, 51
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:13489742-13489415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
149, 50
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:16612721-16612401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
201, 45
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:17511872-17511548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
154, 67
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:22856314-22855991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
149, 14
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:23606768-23606446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
150, 21
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:23786128-23785800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
62, 40
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:32192270-32191942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
154, 52
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:33729526-33729205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
47, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:36162863-36163191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
47, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:40786774-40786442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
142, 54
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:46912641-46912316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 35
               

               
Conread position:
               
96-425
               

               
Cow position:
               
chr21:44114034-44114371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
95, 51
               

               
Conread position:
               
97-289
               

               
Cow position:
               
chr21:8527389-8527571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
148, 53
               

               
Conread position:
               
97-302
               

               
Cow position:
               
chr21:25628815-25629015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
144, 52
               

               
Conread position:
               
97-303
               

               
Cow position:
               
chr21:9979875-9980072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
97-378
               

               
Cow position:
               
chr21:67297-67576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
153, 52
               

               
Conread position:
               
97-395
               

               
Cow position:
               
chr21:25127699-25127395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 54
               

               
Conread position:
               
97-407
               

               
Cow position:
               
chr21:6834144-6833827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
148, 51
               

               
Conread position:
               
97-410
               

               
Cow position:
               
chr21:10514901-10514584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
97-410
               

               
Cow position:
               
chr21:48637663-48637974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
52, 31
               

               
Conread position:
               
97-428
               

               
Cow position:
               
chr21:27124026-27124372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 59
               

               
Conread position:
               
98-336
               

               
Cow position:
               
chr21:27145898-27146133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
154, 48
               

               
Conread position:
               
98-341
               

               
Cow position:
               
chr21:19411921-19412165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
152, 65
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr21:19766948-19766626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
134, 55
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr21:28993522-28993854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
67, 56
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr21:39888655-39888972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 51
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr21:42559186-42558876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
152, 20
               

               
Conread position:
               
99-302
               

               
Cow position:
               
chr21:34722695-34722893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
99-334
               

               
Cow position:
               
chr21:33727368-33727600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
99-410
               

               
Cow position:
               
chr21:24131162-24130853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
100-279
               

               
Cow position:
               
chr21:32453928-32453764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
100-323
               

               
Cow position:
               
chr21:17475915-17475690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
66, 54
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr21:3813391-3813624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
146, 49
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr21:12087680-12087450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
188, 19
               

               
Conread position:
               
100-338
               

               
Cow position:
               
chr21:45439144-45439393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
100-407
               

               
Cow position:
               
chr21:41155957-41155637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
75, 49
               

               
Conread position:
               
100-410
               

               
Cow position:
               
chr21:6764608-6764930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
150, 47
               

               
Conread position:
               
100-410
               

               
Cow position:
               
chr21:23499732-23500049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
100-410
               

               
Cow position:
               
chr21:47802167-47802490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 49
               

               
Conread position:
               
101-250
               

               
Cow position:
               
chr21:46463614-46463466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
83, 47
               

               
Conread position:
               
102-267
               

               
Cow position:
               
chr21:34727147-34727312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
63, 68
               

               
Conread position:
               
102-334
               

               
Cow position:
               
chr21:39450071-39450308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
147, 56
               

               
Conread position:
               
102-395
               

               
Cow position:
               
chr21:17414459-17414744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
103-333
               

               
Cow position:
               
chr21:2294072-2293854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
142, 45
               

               
Conread position:
               
105-289
               

               
Cow position:
               
chr21:29224773-29224956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
140, 43
               

               
Conread position:
               
105-327
               

               
Cow position:
               
chr21:42131507-42131738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
129, 28
               

               
Conread position:
               
105-410
               

               
Cow position:
               
chr21:23192425-23192746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
209, 70
               

               
Conread position:
               
108-336
               

               
Cow position:
               
chr21:18783604-18783825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
108-336
               

               
Cow position:
               
chr21:44109087-44108866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
63, 41
               

               
Conread position:
               
108-407
               

               
Cow position:
               
chr21:8985636-8985324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 111
               

               
Conread position:
               
108-410
               

               
Cow position:
               
chr21:1464314-1464005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
135, 41
               

               
Conread position:
               
108-410
               

               
Cow position:
               
chr21:5454907-5455214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
128, 41
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chr21:23310869-23311089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
131, 40
               

               
Conread position:
               
110-336
               

               
Cow position:
               
chr21:49662039-49662258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
64, 53
               

               
Conread position:
               
110-410
               

               
Cow position:
               
chr21:42501126-42500803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
51, 276
               

               
Conread position:
               
112-328
               

               
Cow position:
               
chr21:28617671-28617454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 45
               

               
Conread position:
               
112-334
               

               
Cow position:
               
chr21:5137407-5137629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr21:2785696-2785921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
192, 37
               

               
Conread position:
               
112-378
               

               
Cow position:
               
chr21:26829183-26829437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
178, 37
               

               
Conread position:
               
112-410
               

               
Cow position:
               
chr21:23984200-23984512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
112-410
               

               
Cow position:
               
chr21:27743829-27743513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
114-294
               

               
Cow position:
               
chr21:13751471-13751291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 160
               

               
Conread position:
               
114-410
               

               
Cow position:
               
chr21:10070855-10071157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
136, 49
               

               
Conread position:
               
115-332
               

               
Cow position:
               
chr21:39809971-39809762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
115-336
               

               
Cow position:
               
chr21:36793972-36793751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
146, 135
               

               
Conread position:
               
117-383
               

               
Cow position:
               
chr21:31676574-31676297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 32
               

               
Conread position:
               
118-410
               

               
Cow position:
               
chr21:42190097-42190395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
119-336
               

               
Cow position:
               
chr21:42145992-42145776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 101
               

               
Conread position:
               
120-294
               

               
Cow position:
               
chr21:4568357-4568186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
120-410
               

               
Cow position:
               
chr21:21480112-21480407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
123-334
               

               
Cow position:
               
chr21:911897-912106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
128-410
               

               
Cow position:
               
chr21:42913679-42913974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 41
               

               
Conread position:
               
129-249
               

               
Cow position:
               
chr21:14228504-14228624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
129-371
               

               
Cow position:
               
chr21:17302316-17302565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
133-333
               

               
Cow position:
               
chr21:21143960-21143763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
133-338
               

               
Cow position:
               
chr21:18495029-18494822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
164, 29
               

               
Conread position:
               
133-411
               

               
Cow position:
               
chr21:21216082-21216370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
200, 14
               

               
Conread position:
               
135-410
               

               
Cow position:
               
chr21:40058864-40058578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
137-395
               

               
Cow position:
               
chr21:12617195-12616926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
201, 153
               

               
Conread position:
               
138-410
               

               
Cow position:
               
chr21:394075-393793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
166, 31
               

               
Conread position:
               
141-289
               

               
Cow position:
               
chr21:45375678-45375529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 108
               

               
Conread position:
               
143-336
               

               
Cow position:
               
chr21:31277873-31277677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
144-404
               

               
Cow position:
               
chr21:48250977-48251252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
152, 31
               

               
Conread position:
               
146-409
               

               
Cow position:
               
chr21:42024169-42023908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
192, 29
               

               
Conread position:
               
146-410
               

               
Cow position:
               
chr21:41957128-41957402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
188, 29
               

               
Conread position:
               
148-330
               

               
Cow position:
               
chr21:31511337-31511154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 109
               

               
Conread position:
               
150-306
               

               
Cow position:
               
chr21:28944320-28944475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
150-336
               

               
Cow position:
               
chr21:37361432-37361609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 19
               

               
Conread position:
               
150-406
               

               
Cow position:
               
chr21:29943049-29942777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 77
               

               
Conread position:
               
151-303
               

               
Cow position:
               
chr21:17434274-17434425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
153-333
               

               
Cow position:
               
chr21:47495612-47495795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
155-330
               

               
Cow position:
               
chr21:47009194-47009375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
155-336
               

               
Cow position:
               
chr21:28027848-28027662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
41, 158
               

               
Conread position:
               
157-397
               

               
Cow position:
               
chr21:18935797-18935546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
133, 41
               

               
Conread position:
               
158-407
               

               
Cow position:
               
chr21:40244477-40244209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
7, 12
               

               
Conread position:
               
159-336
               

               
Cow position:
               
chr21:47861232-47861053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
162-410
               

               
Cow position:
               
chr21:17412267-17412520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
163-336
               

               
Cow position:
               
chr21:13850034-13850212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 6
               

               
Conread position:
               
163-410
               

               
Cow position:
               
chr21:48484415-48484668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
82, 120
               

               
Conread position:
               
165-386
               

               
Cow position:
               
chr21:8618308-8618070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 147
               

               
Conread position:
               
166-337
               

               
Cow position:
               
chr21:9998688-9998863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
166-410
               

               
Cow position:
               
chr21:34659063-34658806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
79, 108
               

               
Conread position:
               
167-336
               

               
Cow position:
               
chr21:4268905-4268732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
22, 142
               

               
Conread position:
               
167-336
               

               
Cow position:
               
chr21:29979730-29979897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
169-333
               

               
Cow position:
               
chr21:12640363-12640195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
169-410
               

               
Cow position:
               
chr21:34738636-34738370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
174-386
               

               
Cow position:
               
chr21:24094727-24094948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
178-410
               

               
Cow position:
               
chr21:4080376-4080126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
178-410
               

               
Cow position:
               
chr21:33419706-33419943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
182-395
               

               
Cow position:
               
chr21:13303832-13303606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
188-404
               

               
Cow position:
               
chr21:363657-363433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
97, 56
               

               
Conread position:
               
191-336
               

               
Cow position:
               
chr21:45151615-45151764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
200-336
               

               
Cow position:
               
chr21:13163886-13163749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
51, 82
               

               
Conread position:
               
200-410
               

               
Cow position:
               
chr21:7132466-7132690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
104, 60
               

               
Conread position:
               
203-404
               

               
Cow position:
               
chr21:24797679-24797473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
116, 89
               

               
Conread position:
               
209-416
               

               
Cow position:
               
chr21:13763607-13763390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 35
               

               
Conread position:
               
221-338
               

               
Cow position:
               
chr21:35897456-35897339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-408
               

               
Cow position:
               
chr21:11877331-11877158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               
Show alignments to all cow chromosomes.