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Cow genome map

           
Conread name:
           
Mixc-0034c10
        

               
Conread position:
               
1-202
               

               
Cow position:
               
chr4:45706173-45705967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
25, 157
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr4:12901423-12901670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 162
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr4:37313298-37313025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr4:2602363-2602020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 57
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr4:49158665-49158995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr4:23509722-23509371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr4:17052460-17052868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
96, 193
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr4:19097418-19097008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
96, 28
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr4:45662380-45662791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 158
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr4:6653851-6653445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
96, 28
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr4:10915704-10916136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
2-277
               

               
Cow position:
               
chr4:59378043-59377761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 161
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chr4:48173268-48172983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
2-405
               

               
Cow position:
               
chr4:41441696-41441271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr4:32693919-32693685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr4:45724995-45724759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr4:14500113-14500378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr4:45074190-45073939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
78, 154
               

               
Conread position:
               
3-250
               

               
Cow position:
               
chr4:19578518-19578277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 112
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr4:20026974-20027246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr4:36290753-36290468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
91, 22
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr4:27632574-27632284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
3-333
               

               
Cow position:
               
chr4:27530248-27529904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
6, 23
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr4:23846923-23847263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr4:52748326-52748670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr4:63964860-63965202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 174
               

               
Conread position:
               
3-387
               

               
Cow position:
               
chr4:35982129-35981713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
3-395
               

               
Cow position:
               
chr4:38999556-38999143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
34, 141
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr4:22009930-22010357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
92, 31
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr4:42423674-42424100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr4:51851343-51850896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 163
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr4:54455217-54455625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
4-302
               

               
Cow position:
               
chr4:22713364-22713669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr4:30974464-30974124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 126
               

               
Conread position:
               
4-410
               

               
Cow position:
               
chr4:508778-509197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 159
               

               
Conread position:
               
4-410
               

               
Cow position:
               
chr4:23450960-23451395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 163
               

               
Conread position:
               
4-410
               

               
Cow position:
               
chr4:40414498-40414930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
4-410
               

               
Cow position:
               
chr4:46258625-46258182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 191
               

               
Conread position:
               
4-410
               

               
Cow position:
               
chr4:56239731-56240145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
93, 21
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chr4:65265177-65265420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr4:65950781-65950530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chr4:47280256-47280011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr4:54524213-54524479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
5-302
               

               
Cow position:
               
chr4:43515847-43515548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
24, 160
               

               
Conread position:
               
5-330
               

               
Cow position:
               
chr4:51769229-51768906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 16
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr4:37502942-37502614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
5-333
               

               
Cow position:
               
chr4:65650004-65650334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
26, 151
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr4:23444917-23445263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
5-335
               

               
Cow position:
               
chr4:49089915-49089583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
74, 119
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr4:7430449-7430106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
84, 204
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr4:46591793-46591447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 10
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr4:51784307-51783969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
5-342
               

               
Cow position:
               
chr4:51899136-51898785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
5-410
               

               
Cow position:
               
chr4:12591085-12591510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 156
               

               
Conread position:
               
5-410
               

               
Cow position:
               
chr4:12903947-12903518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
51, 10
               

               
Conread position:
               
5-410
               

               
Cow position:
               
chr4:34211296-34210876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
5-410
               

               
Cow position:
               
chr4:44838766-44839184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
5-415
               

               
Cow position:
               
chr4:11871795-11872215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
6-146
               

               
Cow position:
               
chr4:28753749-28753606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
98, 31
               

               
Conread position:
               
6-154
               

               
Cow position:
               
chr4:50676046-50676202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
6-214
               

               
Cow position:
               
chr4:64657175-64657386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
6-232
               

               
Cow position:
               
chr4:45013045-45013272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
90, 31
               

               
Conread position:
               
6-233
               

               
Cow position:
               
chr4:20142784-20143012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
25, 21
               

               
Conread position:
               
6-240
               

               
Cow position:
               
chr4:37675742-37675499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
32, 129
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr4:37732355-37732601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 156
               

               
Conread position:
               
6-250
               

               
Cow position:
               
chr4:38946343-38946083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
95, 255
               

               
Conread position:
               
6-250
               

               
Cow position:
               
chr4:45636294-45636038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
91, 155
               

               
Conread position:
               
6-279
               

               
Cow position:
               
chr4:18756564-18756278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 179
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chr4:19407870-19408198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
91, 76
               

               
Conread position:
               
6-329
               

               
Cow position:
               
chr4:30792096-30791759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
45, 40
               

               
Conread position:
               
6-333
               

               
Cow position:
               
chr4:24371732-24372060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
6-334
               

               
Cow position:
               
chr4:34641599-34641939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr4:22344891-22345227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr4:32726353-32726010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 156
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr4:36893488-36893141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 188
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr4:41185790-41186119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
23, 165
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr4:41300870-41301203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 45
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr4:41867564-41867232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr4:43894687-43895017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 154
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr4:45367867-45367521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 161
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr4:58880834-58881179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
6-341
               

               
Cow position:
               
chr4:13973842-13974189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 157
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr4:34383214-34383579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
6-371
               

               
Cow position:
               
chr4:66547639-66548013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 157
               

               
Conread position:
               
6-379
               

               
Cow position:
               
chr4:44613135-44612735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
6-379
               

               
Cow position:
               
chr4:46455941-46456315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
95, 150
               

               
Conread position:
               
6-386
               

               
Cow position:
               
chr4:7704198-7704582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
91, 23
               

               
Conread position:
               
6-397
               

               
Cow position:
               
chr4:45775210-45775627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 171
               

               
Conread position:
               
6-401
               

               
Cow position:
               
chr4:21874934-21874536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
6-402
               

               
Cow position:
               
chr4:10025392-10024994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
6-405
               

               
Cow position:
               
chr4:48152247-48152663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
6-406
               

               
Cow position:
               
chr4:8947514-8947103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
24, 99
               

               
Conread position:
               
6-406
               

               
Cow position:
               
chr4:23656102-23655699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
15, 115
               

               
Conread position:
               
6-406
               

               
Cow position:
               
chr4:44782502-44782079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 114
               

               
Conread position:
               
6-409
               

               
Cow position:
               
chr4:12004342-12003925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 152
               

               
Conread position:
               
6-409
               

               
Cow position:
               
chr4:18095545-18095971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 177
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr4:4672208-4672632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr4:22101137-22101566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
141, 107
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr4:22138093-22138534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 157
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr4:26401082-26400658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 23
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr4:28836662-28836233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
27, 21
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr4:65815580-65815991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
90, 42
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr4:65919736-65919323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
92, 150
               

               
Conread position:
               
7-289
               

               
Cow position:
               
chr4:2099759-2099468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
22, 152
               

               
Conread position:
               
7-289
               

               
Cow position:
               
chr4:19500966-19501249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
7-294
               

               
Cow position:
               
chr4:20147310-20147015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 154
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr4:22907631-22907345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
94, 146
               

               
Conread position:
               
7-315
               

               
Cow position:
               
chr4:17186224-17186545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr4:34210162-34209816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr4:22725218-22724911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
10, 141
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr4:23600294-23599958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
163, 106
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr4:45582996-45583340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
92, 150
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr4:54930303-54930629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 6
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr4:56591164-56590818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 143
               

               
Conread position:
               
7-385
               

               
Cow position:
               
chr4:54191216-54190826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 153
               

               
Conread position:
               
7-387
               

               
Cow position:
               
chr4:58248528-58248133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 248
               

               
Conread position:
               
7-396
               

               
Cow position:
               
chr4:13668493-13668901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
22, 170
               

               
Conread position:
               
7-406
               

               
Cow position:
               
chr4:5609966-5610364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 146
               

               
Conread position:
               
7-407
               

               
Cow position:
               
chr4:3388672-3388252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr4:68076412-68076827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr4:25197365-25197800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
18, 157
               

               
Conread position:
               
8-196
               

               
Cow position:
               
chr4:4277549-4277742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 162
               

               
Conread position:
               
8-302
               

               
Cow position:
               
chr4:34022459-34022765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
8-331
               

               
Cow position:
               
chr4:63349365-63349681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
143, 58
               

               
Conread position:
               
8-335
               

               
Cow position:
               
chr4:68764641-68764304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
93, 69
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chr4:13941584-13941246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 151
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chr4:19321950-19322291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 155
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chr4:59871601-59871281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
93, 150
               

               
Conread position:
               
8-339
               

               
Cow position:
               
chr4:23526817-23526482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
8-410
               

               
Cow position:
               
chr4:22073195-22073610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 159
               

               
Conread position:
               
8-410
               

               
Cow position:
               
chr4:25354650-25354255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
139, 26
               

               
Conread position:
               
8-415
               

               
Cow position:
               
chr4:19584829-19584403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
9-282
               

               
Cow position:
               
chr4:47510509-47510232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
81, 147
               

               
Conread position:
               
9-302
               

               
Cow position:
               
chr4:38944133-38944439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr4:31004286-31004617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr4:45644195-45644524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
95, 9
               

               
Conread position:
               
10-223
               

               
Cow position:
               
chr4:44183991-44184210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 167
               

               
Conread position:
               
10-331
               

               
Cow position:
               
chr4:13284504-13284169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
18, 96
               

               
Conread position:
               
10-333
               

               
Cow position:
               
chr4:13326830-13327167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
10-336
               

               
Cow position:
               
chr4:29291638-29291310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 149
               

               
Conread position:
               
11-197
               

               
Cow position:
               
chr4:54920967-54921161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
11-217
               

               
Cow position:
               
chr4:19102759-19102978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
86, 134
               

               
Conread position:
               
11-260
               

               
Cow position:
               
chr4:52779977-52779716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 160
               

               
Conread position:
               
11-302
               

               
Cow position:
               
chr4:48961363-48961658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 187
               

               
Conread position:
               
11-326
               

               
Cow position:
               
chr4:13344661-13344339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 169
               

               
Conread position:
               
11-334
               

               
Cow position:
               
chr4:24810328-24810653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr4:63095953-63096287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
11-340
               

               
Cow position:
               
chr4:12127514-12127859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
19, 152
               

               
Conread position:
               
11-379
               

               
Cow position:
               
chr4:46597491-46597115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 140
               

               
Conread position:
               
11-395
               

               
Cow position:
               
chr4:11194308-11193898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
86, 146
               

               
Conread position:
               
11-406
               

               
Cow position:
               
chr4:37915213-37915624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
87, 148
               

               
Conread position:
               
11-410
               

               
Cow position:
               
chr4:10732345-10731920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
11-410
               

               
Cow position:
               
chr4:13693551-13693971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
13-213
               

               
Cow position:
               
chr4:19292838-19292631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
13-336
               

               
Cow position:
               
chr4:39128658-39128319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
13-410
               

               
Cow position:
               
chr4:37704386-37703967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
14-410
               

               
Cow position:
               
chr4:31023566-31023144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
14-410
               

               
Cow position:
               
chr4:61391107-61391499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
290, 101
               

               
Conread position:
               
15-242
               

               
Cow position:
               
chr4:11380400-11380166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 142
               

               
Conread position:
               
16-250
               

               
Cow position:
               
chr4:34699916-34700164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
16-292
               

               
Cow position:
               
chr4:16881242-16881531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
15, 62
               

               
Conread position:
               
16-297
               

               
Cow position:
               
chr4:806174-805884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 85
               

               
Conread position:
               
16-333
               

               
Cow position:
               
chr4:36929424-36929104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
16-395
               

               
Cow position:
               
chr4:53208411-53208017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
81, 146
               

               
Conread position:
               
16-408
               

               
Cow position:
               
chr4:53126228-53125840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
16-410
               

               
Cow position:
               
chr4:10412487-10412083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
60, 12
               

               
Conread position:
               
18-195
               

               
Cow position:
               
chr4:13608569-13608390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 49
               

               
Conread position:
               
18-233
               

               
Cow position:
               
chr4:22546727-22546947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
18-283
               

               
Cow position:
               
chr4:54767266-54767548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
18-289
               

               
Cow position:
               
chr4:41370823-41371105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
42, 161
               

               
Conread position:
               
18-293
               

               
Cow position:
               
chr4:54478804-54479073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
8, 97
               

               
Conread position:
               
18-302
               

               
Cow position:
               
chr4:45076959-45077247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
8, 145
               

               
Conread position:
               
18-305
               

               
Cow position:
               
chr4:25888719-25889012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
16, 9
               

               
Conread position:
               
18-315
               

               
Cow position:
               
chr4:48143953-48143634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
18-329
               

               
Cow position:
               
chr4:16762610-16762937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
79, 153
               

               
Conread position:
               
18-332
               

               
Cow position:
               
chr4:28839732-28839418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
18-334
               

               
Cow position:
               
chr4:47348944-47348621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 143
               

               
Conread position:
               
18-335
               

               
Cow position:
               
chr4:29384119-29384430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
140, 83
               

               
Conread position:
               
18-335
               

               
Cow position:
               
chr4:34165859-34166186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
75, 283
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr4:46020-45705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
80, 57
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr4:4084334-4084658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
79, 144
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr4:11897188-11897511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 156
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr4:19700213-19699888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr4:20157300-20157624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr4:25879506-25879183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 137
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr4:28771949-28772279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 168
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr4:34631017-34630689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
21, 169
               

               
Conread position:
               
18-341
               

               
Cow position:
               
chr4:16594198-16593865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
82, 181
               

               
Conread position:
               
18-379
               

               
Cow position:
               
chr4:19744991-19744621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 129
               

               
Conread position:
               
18-395
               

               
Cow position:
               
chr4:33096867-33097246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
18-395
               

               
Cow position:
               
chr4:36731306-36730906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
83, 143
               

               
Conread position:
               
18-397
               

               
Cow position:
               
chr4:51728194-51727797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
18-404
               

               
Cow position:
               
chr4:33433138-33433549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
14, 392
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr4:19435371-19434962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
133, 95
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr4:31136870-31136454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 9
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr4:45738359-45738778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 240
               

               
Conread position:
               
18-416
               

               
Cow position:
               
chr4:62771805-62772240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
19-232
               

               
Cow position:
               
chr4:63769948-63769739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
14, 8
               

               
Conread position:
               
19-289
               

               
Cow position:
               
chr4:45685572-45685303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
131, 94
               

               
Conread position:
               
19-294
               

               
Cow position:
               
chr4:69543299-69543008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
19-302
               

               
Cow position:
               
chr4:61148730-61148415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
19-302
               

               
Cow position:
               
chr4:65175030-65175317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
78, 142
               

               
Conread position:
               
19-336
               

               
Cow position:
               
chr4:4186233-4185909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
19-336
               

               
Cow position:
               
chr4:36841380-36841067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
179, 29
               

               
Conread position:
               
19-405
               

               
Cow position:
               
chr4:43865742-43866145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
85, 138
               

               
Conread position:
               
19-411
               

               
Cow position:
               
chr4:23646747-23647143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
99, 51
               

               
Conread position:
               
19-421
               

               
Cow position:
               
chr4:19582503-19582926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
20-276
               

               
Cow position:
               
chr4:61313099-61313360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 7
               

               
Conread position:
               
20-277
               

               
Cow position:
               
chr4:44449395-44449659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
20-334
               

               
Cow position:
               
chr4:13222073-13222386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
81, 141
               

               
Conread position:
               
20-336
               

               
Cow position:
               
chr4:21531530-21531853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
20-336
               

               
Cow position:
               
chr4:25370218-25369904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
66, 144
               

               
Conread position:
               
20-336
               

               
Cow position:
               
chr4:53209328-53209023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
231, 55
               

               
Conread position:
               
20-410
               

               
Cow position:
               
chr4:49794772-49794382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
21-238
               

               
Cow position:
               
chr4:61066878-61066660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
76, 150
               

               
Conread position:
               
21-269
               

               
Cow position:
               
chr4:36577514-36577775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
21-336
               

               
Cow position:
               
chr4:8801614-8801295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
22-417
               

               
Cow position:
               
chr4:2141850-2141439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
23-292
               

               
Cow position:
               
chr4:29805263-29805538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
72, 134
               

               
Conread position:
               
24-280
               

               
Cow position:
               
chr4:53346441-53346170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
30, 143
               

               
Conread position:
               
24-371
               

               
Cow position:
               
chr4:961541-961923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
73, 146
               

               
Conread position:
               
24-408
               

               
Cow position:
               
chr4:45589491-45589884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
65, 156
               

               
Conread position:
               
25-324
               

               
Cow position:
               
chr4:27344570-27344871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
38, 150
               

               
Conread position:
               
27-257
               

               
Cow position:
               
chr4:24481565-24481797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
27-334
               

               
Cow position:
               
chr4:12676905-12676602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
27-336
               

               
Cow position:
               
chr4:10999608-10999916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
120, 87
               

               
Conread position:
               
27-407
               

               
Cow position:
               
chr4:60897175-60897569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
27-410
               

               
Cow position:
               
chr4:10056312-10055912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 130
               

               
Conread position:
               
27-410
               

               
Cow position:
               
chr4:13590192-13589795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
6, 90
               

               
Conread position:
               
27-410
               

               
Cow position:
               
chr4:24001860-24002268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
27-412
               

               
Cow position:
               
chr4:15871625-15872023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 88
               

               
Conread position:
               
28-336
               

               
Cow position:
               
chr4:8770205-8769897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
9, 126
               

               
Conread position:
               
28-386
               

               
Cow position:
               
chr4:5460756-5461128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
29-293
               

               
Cow position:
               
chr4:34369345-34369622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
68, 132
               

               
Conread position:
               
29-300
               

               
Cow position:
               
chr4:36075666-36075933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
29-306
               

               
Cow position:
               
chr4:1495304-1495587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
68, 51
               

               
Conread position:
               
29-306
               

               
Cow position:
               
chr4:10379216-10378928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
38, 274
               

               
Conread position:
               
29-335
               

               
Cow position:
               
chr4:63459118-63459427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr4:3837380-3837067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 154
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr4:22860606-22860918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
72, 150
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr4:26659405-26659093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 85
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr4:34310355-34310667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr4:56570911-56570592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 133
               

               
Conread position:
               
29-338
               

               
Cow position:
               
chr4:19238322-19238025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
222, 69
               

               
Conread position:
               
29-341
               

               
Cow position:
               
chr4:10968284-10968602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
68, 168
               

               
Conread position:
               
29-382
               

               
Cow position:
               
chr4:59785427-59785045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 172
               

               
Conread position:
               
29-386
               

               
Cow position:
               
chr4:21365506-21365139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
29-395
               

               
Cow position:
               
chr4:21391707-21392088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 130
               

               
Conread position:
               
29-397
               

               
Cow position:
               
chr4:3850656-3850267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 133
               

               
Conread position:
               
29-406
               

               
Cow position:
               
chr4:21017-20631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 84
               

               
Conread position:
               
29-407
               

               
Cow position:
               
chr4:19597219-19597609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
122, 86
               

               
Conread position:
               
29-407
               

               
Cow position:
               
chr4:46476841-46477234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
68, 137
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr4:9444582-9444988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
66, 148
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr4:20327604-20328011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
69, 219
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr4:27276439-27276842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 123
               

               
Conread position:
               
29-410
               

               
Cow position:
               
chr4:53100906-53100507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
65, 133
               

               
Conread position:
               
31-337
               

               
Cow position:
               
chr4:11021548-11021863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
32-336
               

               
Cow position:
               
chr4:27755202-27755513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
47, 132
               

               
Conread position:
               
32-410
               

               
Cow position:
               
chr4:37935183-37935580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 129
               

               
Conread position:
               
33-334
               

               
Cow position:
               
chr4:3283346-3283659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
68, 194
               

               
Conread position:
               
34-273
               

               
Cow position:
               
chr4:48409169-48409415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
63, 129
               

               
Conread position:
               
34-322
               

               
Cow position:
               
chr4:54111841-54111545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
34-336
               

               
Cow position:
               
chr4:42921760-42922058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
77, 73
               

               
Conread position:
               
34-372
               

               
Cow position:
               
chr4:62983462-62983814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
64, 117
               

               
Conread position:
               
34-407
               

               
Cow position:
               
chr4:3421722-3421350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
64, 176
               

               
Conread position:
               
34-410
               

               
Cow position:
               
chr4:8413023-8413409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 113
               

               
Conread position:
               
34-410
               

               
Cow position:
               
chr4:38935458-38935079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
35-410
               

               
Cow position:
               
chr4:19314111-19313706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
53, 127
               

               
Conread position:
               
36-410
               

               
Cow position:
               
chr4:17124213-17124590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
134, 48
               

               
Conread position:
               
37-249
               

               
Cow position:
               
chr4:46183510-46183285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 133
               

               
Conread position:
               
37-332
               

               
Cow position:
               
chr4:12049343-12049034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
57, 129
               

               
Conread position:
               
37-335
               

               
Cow position:
               
chr4:37691215-37691519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
60, 144
               

               
Conread position:
               
37-410
               

               
Cow position:
               
chr4:46058680-46059040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
296, 82
               

               
Conread position:
               
40-336
               

               
Cow position:
               
chr4:19315914-19316212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 118
               

               
Conread position:
               
40-336
               

               
Cow position:
               
chr4:25356225-25356518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 49
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chr4:59008271-59008582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
47, 101
               

               
Conread position:
               
50-405
               

               
Cow position:
               
chr4:2610295-2609944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
281, 35
               

               
Conread position:
               
51-248
               

               
Cow position:
               
chr4:13026387-13026176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
50, 110
               

               
Conread position:
               
54-336
               

               
Cow position:
               
chr4:61897455-61897751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 106
               

               
Conread position:
               
54-341
               

               
Cow position:
               
chr4:33030629-33030341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
54-393
               

               
Cow position:
               
chr4:16799106-16799474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 106
               

               
Conread position:
               
54-395
               

               
Cow position:
               
chr4:620055-620436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
44, 103
               

               
Conread position:
               
54-396
               

               
Cow position:
               
chr4:22744379-22744041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
55-232
               

               
Cow position:
               
chr4:11610949-11610768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
55-336
               

               
Cow position:
               
chr4:21232795-21233083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
42, 122
               

               
Conread position:
               
59-333
               

               
Cow position:
               
chr4:57147380-57147110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 56
               

               
Conread position:
               
59-379
               

               
Cow position:
               
chr4:51739642-51739971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 103
               

               
Conread position:
               
59-410
               

               
Cow position:
               
chr4:21065111-21064734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
42, 165
               

               
Conread position:
               
59-410
               

               
Cow position:
               
chr4:23854255-23853904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
91, 55
               

               
Conread position:
               
62-386
               

               
Cow position:
               
chr4:5999123-5999469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
63-289
               

               
Cow position:
               
chr4:45711434-45711204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 51
               

               
Conread position:
               
63-303
               

               
Cow position:
               
chr4:46552266-46552499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
42, 37
               

               
Conread position:
               
64-338
               

               
Cow position:
               
chr4:33612289-33612577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 114
               

               
Conread position:
               
65-326
               

               
Cow position:
               
chr4:20842981-20842718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
65-337
               

               
Cow position:
               
chr4:13435806-13435529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
31, 90
               

               
Conread position:
               
66-405
               

               
Cow position:
               
chr4:21058316-21058679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
24, 187
               

               
Conread position:
               
67-336
               

               
Cow position:
               
chr4:25359665-25359396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
178, 52
               

               
Conread position:
               
71-336
               

               
Cow position:
               
chr4:33623759-33623506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
171, 11
               

               
Conread position:
               
76-230
               

               
Cow position:
               
chr4:2537241-2537085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
77-336
               

               
Cow position:
               
chr4:44024772-44025030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
80-302
               

               
Cow position:
               
chr4:6413143-6413367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
81-387
               

               
Cow position:
               
chr4:29237117-29237426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
257, 10
               

               
Conread position:
               
83-357
               

               
Cow position:
               
chr4:43740571-43740291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
83-395
               

               
Cow position:
               
chr4:15905137-15904814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 13
               

               
Conread position:
               
83-404
               

               
Cow position:
               
chr4:25806936-25806606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
213, 13
               

               
Conread position:
               
87-387
               

               
Cow position:
               
chr4:54937925-54937610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
90-301
               

               
Cow position:
               
chr4:38887100-38887314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
90-302
               

               
Cow position:
               
chr4:42347247-42347462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 65
               

               
Conread position:
               
91-334
               

               
Cow position:
               
chr4:47290108-47289860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 56
               

               
Conread position:
               
92-336
               

               
Cow position:
               
chr4:26746511-26746272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
152, 7
               

               
Conread position:
               
92-336
               

               
Cow position:
               
chr4:65825814-65826067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
93-263
               

               
Cow position:
               
chr4:52307594-52307751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
93-328
               

               
Cow position:
               
chr4:28543584-28543805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
158, 56
               

               
Conread position:
               
93-332
               

               
Cow position:
               
chr4:44973663-44973434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
93-333
               

               
Cow position:
               
chr4:65841738-65841971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
93-336
               

               
Cow position:
               
chr4:19463524-19463279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
206, 76
               

               
Conread position:
               
93-336
               

               
Cow position:
               
chr4:46550408-46550172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
209, 54
               

               
Conread position:
               
93-336
               

               
Cow position:
               
chr4:47730886-47730650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
93-336
               

               
Cow position:
               
chr4:55395791-55395556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
152, 56
               

               
Conread position:
               
93-336
               

               
Cow position:
               
chr4:64072326-64072566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
221, 7
               

               
Conread position:
               
93-341
               

               
Cow position:
               
chr4:9681334-9681085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
14, 58
               

               
Conread position:
               
93-379
               

               
Cow position:
               
chr4:20139487-20139787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 56
               

               
Conread position:
               
93-387
               

               
Cow position:
               
chr4:49629509-49629221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
93-395
               

               
Cow position:
               
chr4:3687950-3687644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
245, 54
               

               
Conread position:
               
93-395
               

               
Cow position:
               
chr4:19142304-19142005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
135, 54
               

               
Conread position:
               
93-395
               

               
Cow position:
               
chr4:19497235-19497534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
245, 48
               

               
Conread position:
               
93-406
               

               
Cow position:
               
chr4:39231493-39231818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
161, 56
               

               
Conread position:
               
93-407
               

               
Cow position:
               
chr4:24744378-24744711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
73, 54
               

               
Conread position:
               
93-410
               

               
Cow position:
               
chr4:16602032-16602352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
239, 7
               

               
Conread position:
               
93-410
               

               
Cow position:
               
chr4:37619860-37620186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 56
               

               
Conread position:
               
94-299
               

               
Cow position:
               
chr4:52823386-52823579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
153, 47
               

               
Conread position:
               
94-336
               

               
Cow position:
               
chr4:53546054-53545820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
152, 6
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr4:17660161-17660363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 82
               

               
Conread position:
               
95-410
               

               
Cow position:
               
chr4:14153120-14152774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
63, 15
               

               
Conread position:
               
96-269
               

               
Cow position:
               
chr4:52087953-52087790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
76, 52
               

               
Conread position:
               
96-269
               

               
Cow position:
               
chr4:54171651-54171477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
115, 53
               

               
Conread position:
               
96-274
               

               
Cow position:
               
chr4:58423775-58423965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
96-280
               

               
Cow position:
               
chr4:48104544-48104729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
130, 52
               

               
Conread position:
               
96-287
               

               
Cow position:
               
chr4:47041404-47041587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
96-293
               

               
Cow position:
               
chr4:2885515-2885713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 51
               

               
Conread position:
               
96-294
               

               
Cow position:
               
chr4:9571081-9570879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
96-295
               

               
Cow position:
               
chr4:4843219-4843418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
96-300
               

               
Cow position:
               
chr4:46720142-46720340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
139, 53
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr4:63916-64117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr4:44676220-44676018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
96-321
               

               
Cow position:
               
chr4:3689729-3689511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
96-326
               

               
Cow position:
               
chr4:29106932-29106697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 53
               

               
Conread position:
               
96-330
               

               
Cow position:
               
chr4:27665038-27664799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
73, 52
               

               
Conread position:
               
96-331
               

               
Cow position:
               
chr4:1354600-1354821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chr4:203118-203355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
194, 53
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chr4:41602874-41602639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
77, 67
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chr4:44451541-44451321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
128, 35
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chr4:44956157-44956399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
96-335
               

               
Cow position:
               
chr4:48322058-48321817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
52, 108
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:656783-657030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:3440426-3440194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:11671477-11671240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 53
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:13043288-13043058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
45, 53
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:24688320-24688561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:26307464-26307712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 94
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:31348161-31348406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
149, 139
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:31505999-31506242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
61, 218
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:34208962-34208716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
151, 53
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:40823088-40823327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:46060967-46060734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
152, 53
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:63119214-63119443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr4:65432175-65431933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
188, 53
               

               
Conread position:
               
96-340
               

               
Cow position:
               
chr4:17474464-17474222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
80, 53
               

               
Conread position:
               
96-341
               

               
Cow position:
               
chr4:50203779-50203530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
149, 51
               

               
Conread position:
               
96-379
               

               
Cow position:
               
chr4:8705015-8704726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
96-379
               

               
Cow position:
               
chr4:15623875-15623576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 107
               

               
Conread position:
               
96-379
               

               
Cow position:
               
chr4:21371416-21371132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
80, 53
               

               
Conread position:
               
96-381
               

               
Cow position:
               
chr4:15439601-15439325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
155, 46
               

               
Conread position:
               
96-382
               

               
Cow position:
               
chr4:58261125-58261424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
96, 140
               

               
Conread position:
               
96-386
               

               
Cow position:
               
chr4:35939982-35940288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 53
               

               
Conread position:
               
96-395
               

               
Cow position:
               
chr4:1015095-1014783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
96-395
               

               
Cow position:
               
chr4:18974448-18974153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
151, 51
               

               
Conread position:
               
96-395
               

               
Cow position:
               
chr4:28399392-28399691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
94, 54
               

               
Conread position:
               
96-395
               

               
Cow position:
               
chr4:66112046-66112361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
208, 79
               

               
Conread position:
               
96-406
               

               
Cow position:
               
chr4:7501894-7501591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
201, 53
               

               
Conread position:
               
96-406
               

               
Cow position:
               
chr4:16339574-16339884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
96-406
               

               
Cow position:
               
chr4:42673201-42672876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
96-406
               

               
Cow position:
               
chr4:58834378-58834700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
96-407
               

               
Cow position:
               
chr4:22236459-22236771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
96-407
               

               
Cow position:
               
chr4:37827824-37828133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
129, 49
               

               
Conread position:
               
96-407
               

               
Cow position:
               
chr4:49745639-49745332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
154, 22
               

               
Conread position:
               
96-409
               

               
Cow position:
               
chr4:24118882-24119209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
136, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:1060246-1060561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
239, 32
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:2894056-2893726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:7964623-7964947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 130
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:8133515-8133833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
154, 68
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:10905440-10905756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
242, 29
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:11187476-11187156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 60
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:11201845-11201521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
149, 49
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:17111848-17112177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 53
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:17832876-17833204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 55
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:18255877-18255565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
56, 73
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:19008071-19007742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
208, 51
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:19265598-19265274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
208, 19
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:25972925-25972600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 48
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:26323765-26323443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
68, 51
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr4:57584217-57584527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 59
               

               
Conread position:
               
96-415
               

               
Cow position:
               
chr4:27997712-27997380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
74, 54
               

               
Conread position:
               
97-262
               

               
Cow position:
               
chr4:25537571-25537407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
97-291
               

               
Cow position:
               
chr4:50769743-50769933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
97-334
               

               
Cow position:
               
chr4:19549016-19548786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 52
               

               
Conread position:
               
97-335
               

               
Cow position:
               
chr4:13832584-13832811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
97-336
               

               
Cow position:
               
chr4:44496397-44496172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
97-378
               

               
Cow position:
               
chr4:4320978-4321273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 46
               

               
Conread position:
               
97-381
               

               
Cow position:
               
chr4:5623177-5623457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 57
               

               
Conread position:
               
97-400
               

               
Cow position:
               
chr4:37343151-37342828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
51, 130
               

               
Conread position:
               
97-405
               

               
Cow position:
               
chr4:68362948-68362645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
200, 72
               

               
Conread position:
               
97-410
               

               
Cow position:
               
chr4:15635424-15635742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
215, 50
               

               
Conread position:
               
97-410
               

               
Cow position:
               
chr4:38799176-38799491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
97-429
               

               
Cow position:
               
chr4:43148435-43148088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
98-269
               

               
Cow position:
               
chr4:4827148-4826980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
145, 51
               

               
Conread position:
               
98-294
               

               
Cow position:
               
chr4:21516980-21517175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
190, 71
               

               
Conread position:
               
98-329
               

               
Cow position:
               
chr4:11332115-11331883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
206, 10
               

               
Conread position:
               
98-336
               

               
Cow position:
               
chr4:243254-243013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
98-336
               

               
Cow position:
               
chr4:33395675-33395902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
75, 50
               

               
Conread position:
               
98-336
               

               
Cow position:
               
chr4:60370803-60371042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
98-406
               

               
Cow position:
               
chr4:22051448-22051762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
56, 88
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr4:47351826-47351508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr4:61972440-61972774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
153, 51
               

               
Conread position:
               
99-334
               

               
Cow position:
               
chr4:49424848-49424628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
99-386
               

               
Cow position:
               
chr4:1035072-1034795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
99-410
               

               
Cow position:
               
chr4:32259823-32260146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 50
               

               
Conread position:
               
100-293
               

               
Cow position:
               
chr4:54851097-54851289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
151, 39
               

               
Conread position:
               
100-294
               

               
Cow position:
               
chr4:23758828-23758634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
100-302
               

               
Cow position:
               
chr4:49001272-49001475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
100-305
               

               
Cow position:
               
chr4:45919059-45918855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
100-313
               

               
Cow position:
               
chr4:38705748-38705967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr4:9845939-9845709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
122, 65
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr4:13256107-13255881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
214, 47
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr4:27561418-27561184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr4:39767375-39767133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
75, 54
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr4:43749792-43750024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
205, 29
               

               
Conread position:
               
100-406
               

               
Cow position:
               
chr4:10992176-10992494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
160, 63
               

               
Conread position:
               
100-410
               

               
Cow position:
               
chr4:22528362-22528686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 54
               

               
Conread position:
               
100-410
               

               
Cow position:
               
chr4:22741394-22741691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
251, 72
               

               
Conread position:
               
101-262
               

               
Cow position:
               
chr4:26011870-26011714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
101-334
               

               
Cow position:
               
chr4:24458083-24458308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
101-335
               

               
Cow position:
               
chr4:51867016-51866784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
202, 57
               

               
Conread position:
               
102-334
               

               
Cow position:
               
chr4:21259237-21259006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 17
               

               
Conread position:
               
102-406
               

               
Cow position:
               
chr4:19307280-19306961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
102-410
               

               
Cow position:
               
chr4:285663-285358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
147, 46
               

               
Conread position:
               
102-410
               

               
Cow position:
               
chr4:14470550-14470867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
201, 47
               

               
Conread position:
               
103-228
               

               
Cow position:
               
chr4:42253110-42253232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
103-336
               

               
Cow position:
               
chr4:38181700-38181470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
74, 47
               

               
Conread position:
               
103-337
               

               
Cow position:
               
chr4:5629738-5629966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
102, 22
               

               
Conread position:
               
103-410
               

               
Cow position:
               
chr4:14920012-14919712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
142, 46
               

               
Conread position:
               
105-274
               

               
Cow position:
               
chr4:47047911-47047743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 59
               

               
Conread position:
               
105-302
               

               
Cow position:
               
chr4:37470568-37470376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
105-306
               

               
Cow position:
               
chr4:33869673-33869478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
105-336
               

               
Cow position:
               
chr4:27291938-27292171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
5, 63
               

               
Conread position:
               
105-336
               

               
Cow position:
               
chr4:46501360-46501142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
146, 43
               

               
Conread position:
               
105-387
               

               
Cow position:
               
chr4:20299291-20298993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
199, 40
               

               
Conread position:
               
106-336
               

               
Cow position:
               
chr4:19438480-19438246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
68, 35
               

               
Conread position:
               
107-336
               

               
Cow position:
               
chr4:52631950-52632182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 42
               

               
Conread position:
               
108-241
               

               
Cow position:
               
chr4:18107145-18107275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
108-293
               

               
Cow position:
               
chr4:33100802-33100986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 50
               

               
Conread position:
               
108-335
               

               
Cow position:
               
chr4:27687940-27687712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
108-336
               

               
Cow position:
               
chr4:33357949-33357719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
184, 67
               

               
Conread position:
               
108-379
               

               
Cow position:
               
chr4:22849703-22849978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
46, 110
               

               
Conread position:
               
108-395
               

               
Cow position:
               
chr4:11901548-11901847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 41
               

               
Conread position:
               
108-410
               

               
Cow position:
               
chr4:479995-480306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
188, 41
               

               
Conread position:
               
108-410
               

               
Cow position:
               
chr4:5984031-5984344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 41
               

               
Conread position:
               
109-294
               

               
Cow position:
               
chr4:30929614-30929425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 40
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chr4:52166839-52167058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
214, 60
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chr4:65538405-65538620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
136, 45
               

               
Conread position:
               
111-302
               

               
Cow position:
               
chr4:45483454-45483263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
133, 38
               

               
Conread position:
               
111-332
               

               
Cow position:
               
chr4:19542805-19542588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
138, 38
               

               
Conread position:
               
111-336
               

               
Cow position:
               
chr4:34924680-34924905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
140, 38
               

               
Conread position:
               
111-386
               

               
Cow position:
               
chr4:54975306-54975033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
136, 37
               

               
Conread position:
               
112-302
               

               
Cow position:
               
chr4:5047331-5047509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
131, 37
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr4:43495906-43495689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr4:53999501-53999719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
138, 21
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr4:63813301-63813514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
112-342
               

               
Cow position:
               
chr4:65730911-65731138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
139, 37
               

               
Conread position:
               
112-402
               

               
Cow position:
               
chr4:16637595-16637889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
133, 37
               

               
Conread position:
               
112-405
               

               
Cow position:
               
chr4:27511274-27510977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 39
               

               
Conread position:
               
112-406
               

               
Cow position:
               
chr4:56233691-56233396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
112-410
               

               
Cow position:
               
chr4:23059987-23060305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
46, 56
               

               
Conread position:
               
112-410
               

               
Cow position:
               
chr4:41097929-41097621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 37
               

               
Conread position:
               
112-410
               

               
Cow position:
               
chr4:48137921-48137615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 37
               

               
Conread position:
               
112-410
               

               
Cow position:
               
chr4:61214986-61215297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
137, 37
               

               
Conread position:
               
113-273
               

               
Cow position:
               
chr4:69386095-69385944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
113-410
               

               
Cow position:
               
chr4:22215645-22215955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
191, 28
               

               
Conread position:
               
114-336
               

               
Cow position:
               
chr4:46370832-46370598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
114-409
               

               
Cow position:
               
chr4:43369839-43370148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
114-410
               

               
Cow position:
               
chr4:28613830-28613522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
167, 35
               

               
Conread position:
               
115-233
               

               
Cow position:
               
chr4:26683680-26683566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
115-334
               

               
Cow position:
               
chr4:36725047-36724832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
118-410
               

               
Cow position:
               
chr4:54804423-54804710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
127, 45
               

               
Conread position:
               
119-328
               

               
Cow position:
               
chr4:568903-568691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
119-410
               

               
Cow position:
               
chr4:1915576-1915874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
123-336
               

               
Cow position:
               
chr4:3475628-3475419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
123-410
               

               
Cow position:
               
chr4:29813545-29813832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
125-407
               

               
Cow position:
               
chr4:19558718-19558428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
127-341
               

               
Cow position:
               
chr4:43909739-43909535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
120, 22
               

               
Conread position:
               
127-341
               

               
Cow position:
               
chr4:65891986-65891774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
127-407
               

               
Cow position:
               
chr4:53833040-53832755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
145, 22
               

               
Conread position:
               
128-336
               

               
Cow position:
               
chr4:18576777-18576988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
41, 19
               
UCSC Genome Browser

               
Conread position:
               
128-410
               

               
Cow position:
               
chr4:561394-561103 (view  custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
33, 19
               
UCSC Genome Browser

               
               
               
Conread position:
128-410

               
               
               
Cow position:
chr4:27540609-27540322 (view  custom track)

               
               
               
Alignm length:
296

               
               
               
Alignm identity:
206

               
               
               
Alignm E-value:
5e-33

               
               
               
Alignm gaps (pig, cow):
210, 21
UCSC Genome Browser

               
               
               
Conread position:
129-335

               
               
               
Cow position:
chr4:1237122-1237328 (view  custom track)

               
               
               
Alignm length:
212

               
               
               
Alignm identity:
154

               
               
               
Alignm E-value:
8e-28

               
               
               
Alignm gaps (pig, cow):
56, 20

               
               
               Conread position:129-407
               
               
               Cow position:chr4:11099675-11099961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):32, 20

               
               
               Conread position:129-410
               
               
               Cow position:chr4:30574442-30574157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):176, 18

               
               
               Conread position:141-410
               
               
               Cow position:chr4:39009949-39009670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:143-390
               
               
               Cow position:chr4:11090717-11090965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:144-336
               
               
               Cow position:chr4:53763141-53763330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 57

               
               
               Conread position:145-336
               
               
               Cow position:chr4:69305630-69305442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:146-336
               
               
               Cow position:chr4:7571388-7571197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:146-336
               
               
               Cow position:chr4:23558471-23558274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 165

               
               
               Conread position:146-336
               
               
               Cow position:chr4:40410152-40410332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):159, 21

               
               
               Conread position:146-409
               
               
               Cow position:chr4:14352694-14352979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:147-301
               
               
               Cow position:chr4:26541721-26541561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:150-410
               
               
               Cow position:chr4:65168030-65168304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:154-396
               
               
               Cow position:chr4:51003339-51003091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):98, 112

               
               
               Conread position:155-409
               
               
               Cow position:chr4:7520-7796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 162

               
               
               Conread position:157-303
               
               
               Cow position:chr4:3462082-3462224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:158-406
               
               
               Cow position:chr4:19561650-19561400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):133, 121

               
               
               Conread position:160-410
               
               
               Cow position:chr4:54501485-54501748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:161-340
               
               
               Cow position:chr4:57931876-57931694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 144

               
               
               Conread position:162-379
               
               
               Cow position:chr4:67392921-67392702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 144

               
               
               Conread position:162-410
               
               
               Cow position:chr4:43542774-43543033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):142, 61

               
               
               Conread position:163-334
               
               
               Cow position:chr4:57555932-57555756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:163-334
               
               
               Cow position:chr4:66118563-66118737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:163-336
               
               
               Cow position:chr4:11004760-11004931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):82, 5

               
               
               Conread position:164-336
               
               
               Cow position:chr4:44072807-44072982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):139, 11

               
               
               Conread position:164-410
               
               
               Cow position:chr4:33421400-33421660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:165-377
               
               
               Cow position:chr4:54667729-54667957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 110

               
               
               Conread position:167-410
               
               
               Cow position:chr4:49212757-49213018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):112, 74

               
               
               Conread position:168-410
               
               
               Cow position:chr4:34171615-34171868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:169-410
               
               
               Cow position:chr4:63365421-63365673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 242

               
               
               Conread position:169-414
               
               
               Cow position:chr4:59833900-59833635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:171-337
               
               
               Cow position:chr4:12259828-12259994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:171-341
               
               
               Cow position:chr4:43295741-43295909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 126

               
               
               Conread position:172-336
               
               
               Cow position:chr4:41292029-41292192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:173-289
               
               
               Cow position:chr4:63077326-63077443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:173-315
               
               
               Cow position:chr4:45574955-45574815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:174-336
               
               
               Cow position:chr4:53447718-53447878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 36

               
               
               Conread position:174-410
               
               
               Cow position:chr4:42232608-42232369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):71, 121

               
               
               Conread position:176-410
               
               
               Cow position:chr4:3990675-3990921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:176-410
               
               
               Cow position:chr4:14513288-14513536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 229

               
               
               Conread position:178-302
               
               
               Cow position:chr4:29238090-29238217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:178-336
               
               
               Cow position:chr4:23911637-23911801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):67, 161

               
               
               Conread position:178-397
               
               
               Cow position:chr4:54468346-54468582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):125, 66

               
               
               Conread position:178-410
               
               
               Cow position:chr4:17201212-17200981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):126, 34

               
               
               Conread position:178-410
               
               
               Cow position:chr4:46668513-46668274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 45

               
               
               Conread position:180-333
               
               
               Cow position:chr4:21064061-21064213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:188-334
               
               
               Cow position:chr4:29842824-29842675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:188-410
               
               
               Cow position:chr4:46275128-46274894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 85

               
               
               Conread position:190-410
               
               
               Cow position:chr4:7249635-7249868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):55, 107

               
               
               Conread position:200-336
               
               
               Cow position:chr4:2536755-2536620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:200-336
               
               
               Cow position:chr4:41907868-41908004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:206-334
               
               
               Cow position:chr4:13608162-13608029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:207-336
               
               
               Cow position:chr4:10472140-10472011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.