Cow genome map
| Conread name: | Mixc-0036k05 |
| Conread position: | 1-270 |
| Cow position: | chr25:25652784-25653055 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 147 |
| Conread position: | 1-283 |
| Cow position: | chr25:3636386-3636102 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-322 |
| Cow position: | chr25:25652868-25653187 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 201 |
| Conread position: | 1-327 |
| Cow position: | chr25:3664023-3664351 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 176 |
| Conread position: | 1-337 |
| Cow position: | chr25:34473767-34474105 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 96 |
| Conread position: | 2-688 |
| Cow position: | chr25:3637084-3636372 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 447 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 10, 122 |
| Conread position: | 4-319 |
| Cow position: | chr25:24385069-24384752 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 4-364 |
| Cow position: | chr25:34473686-34474044 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 175 |
| Conread position: | 6-204 |
| Cow position: | chr25:25653043-25653241 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 6-678 |
| Cow position: | chr25:33530160-33530830 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 413 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 35, 7 |
| Conread position: | 7-226 |
| Cow position: | chr25:25653126-25653344 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 134 |
| Conread position: | 7-323 |
| Cow position: | chr25:3676090-3676408 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 7-357 |
| Cow position: | chr25:4657367-4657012 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 10-286 |
| Cow position: | chr25:25652962-25653239 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 194 |
| Conread position: | 10-360 |
| Cow position: | chr25:33530499-33530848 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 30, 231 |
| Conread position: | 10-682 |
| Cow position: | chr25:25652374-25653044 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 186 |
| Conread position: | 14-320 |
| Cow position: | chr25:3664205-3664512 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 227 |
| Conread position: | 15-270 |
| Cow position: | chr25:3664290-3664546 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 18, 125 |
| Conread position: | 15-286 |
| Cow position: | chr25:3664122-3664394 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 102 |
| Conread position: | 15-683 |
| Cow position: | chr25:33530084-33530750 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 421 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 129 |
| Conread position: | 16-216 |
| Cow position: | chr25:3636202-3636001 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 128 |
| Conread position: | 16-225 |
| Cow position: | chr25:34473615-34473825 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 16-235 |
| Cow position: | chr25:3676016-3676236 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 16-235 |
| Cow position: | chr25:33157197-33156977 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 16-270 |
| Cow position: | chr25:33506772-33507027 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 25, 200 |
| Conread position: | 16-311 |
| Cow position: | chr25:25652296-25652592 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 131 |
| Conread position: | 16-320 |
| Cow position: | chr25:25652212-25652517 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 131 |
| Conread position: | 16-325 |
| Cow position: | chr25:33529122-33529434 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 124 |
| Conread position: | 16-327 |
| Cow position: | chr25:4657441-4657131 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 115 |
| Conread position: | 16-443 |
| Cow position: | chr25:33506856-33507282 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 292 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 16-682 |
| Cow position: | chr25:3663955-3664617 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 413 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 104 |
| Conread position: | 54-227 |
| Cow position: | chr25:23267189-23267015 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 150 |
| Conread position: | 54-288 |
| Cow position: | chr25:24385101-24384867 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 51 |
| Conread position: | 54-320 |
| Cow position: | chr25:34763141-34763407 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 54-364 |
| Cow position: | chr25:33529077-33529386 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 97, 92 |
| Conread position: | 54-668 |
| Cow position: | chr25:25652587-25653198 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 187 |
| Conread position: | 54-683 |
| Cow position: | chr25:33530038-33530666 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 386 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 54-685 |
| Cow position: | chr25:25652503-25653131 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 72-687 |
| Cow position: | chr25:3663928-3664540 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 390 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 79, 74 |
| Conread position: | 74-284 |
| Cow position: | chr25:25652187-25652397 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 180, 166 |
| Conread position: | 77-331 |
| Cow position: | chr25:4657463-4657209 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 74, 70 |
| Conread position: | 81-685 |
| Cow position: | chr25:24385410-24384809 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 382 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 90-361 |
| Cow position: | chr25:33506763-33507036 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 335-686 |
| Cow position: | chr25:33506581-33506936 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 337-688 |
| Cow position: | chr25:3675829-3676182 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 118 |
| Conread position: | 393-688 |
| Cow position: | chr25:24385439-24385142 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 484-668 |
| Cow position: | chr25:25652172-25652358 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 486-668 |
| Cow position: | chr25:427317-427499 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 494-686 |
| Cow position: | chr25:33530057-33530249 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 507-683 |
| Cow position: | chr25:33529107-33529283 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 132, 139 |
| Conread position: | 509-668 |
| Cow position: | chr25:25652283-25652442 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 512-682 |
| Cow position: | chr25:3636296-3636126 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 512-683 |
| Cow position: | chr25:4657283-4657112 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 134, 111 |
| Conread position: | 512-683 |
| Cow position: | chr25:33506846-33507017 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 125, 116 |
| Conread position: | 512-688 |
| Cow position: | chr25:3636212-3636036 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 513-668 |
| Cow position: | chr25:25653127-25653282 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 128, 133 |
| Conread position: | 522-683 |
| Cow position: | chr25:33506940-33507101 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 41 |
Show alignments to all cow chromosomes.