Cow genome map
| Conread name: | Mixc-0036n02 |
| Conread position: | 1-173 |
| Cow position: | chr19:14960254-14960426 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-222 |
| Cow position: | chr19:23650027-23649806 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 171, 181 |
| Conread position: | 1-223 |
| Cow position: | chr19:14940209-14939986 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 1-236 |
| Cow position: | chr19:14959920-14960155 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 1-238 |
| Cow position: | chr19:14940629-14940392 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-238 |
| Cow position: | chr19:14958943-14959174 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 1-238 |
| Cow position: | chr19:23614829-23614592 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 1-243 |
| Cow position: | chr19:20678508-20678267 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 181, 172 |
| Conread position: | 1-281 |
| Cow position: | chr19:14940461-14940181 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 109, 102 |
| Conread position: | 1-289 |
| Cow position: | chr19:14940293-14940005 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-136 |
| Cow position: | chr19:23613484-23613350 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-219 |
| Cow position: | chr19:20635497-20635713 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 2-222 |
| Cow position: | chr19:14959433-14959654 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 2-235 |
| Cow position: | chr19:14941048-14940815 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 2-235 |
| Cow position: | chr19:14948163-14948396 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-238 |
| Cow position: | chr19:14959837-14960073 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 95, 104 |
| Conread position: | 2-261 |
| Cow position: | chr19:14960171-14960430 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-284 |
| Cow position: | chr19:14940544-14940262 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-291 |
| Cow position: | chr19:23597501-23597212 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 181, 165 |
| Conread position: | 2-368 |
| Cow position: | chr19:14940964-14940589 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 2-376 |
| Cow position: | chr19:14948079-14948461 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 170, 180 |
| Conread position: | 4-224 |
| Cow position: | chr19:23650444-23650224 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-231 |
| Cow position: | chr19:23650192-23649965 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 168, 179 |
| Conread position: | 4-238 |
| Cow position: | chr19:23613650-23613416 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-157 |
| Cow position: | chr19:23649771-23649619 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-221 |
| Cow position: | chr19:14916179-14915962 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 105, 46 |
| Conread position: | 5-223 |
| Cow position: | chr19:23650359-23650141 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 179, 164 |
| Conread position: | 5-229 |
| Cow position: | chr19:23597414-23597190 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-235 |
| Cow position: | chr19:43569755-43569985 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-238 |
| Cow position: | chr19:23650107-23649874 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-238 |
| Cow position: | chr19:23614740-23614508 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 87, 100 |
| Conread position: | 6-381 |
| Cow position: | chr19:14940792-14940406 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 277, 335 |
| Conread position: | 10-233 |
| Cow position: | chr19:20635085-20635308 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 163, 172 |
| Conread position: | 10-234 |
| Cow position: | chr19:14958868-14959092 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 99, 94 |
| Conread position: | 10-234 |
| Cow position: | chr19:20635253-20635477 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-228 |
| Cow position: | chr19:20677826-20677609 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-232 |
| Cow position: | chr19:23613979-23613758 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-234 |
| Cow position: | chr19:20677910-20677687 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 178, 162 |
| Conread position: | 11-234 |
| Cow position: | chr19:20678162-20677939 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 169, 162 |
| Conread position: | 11-234 |
| Cow position: | chr19:43569929-43570152 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-235 |
| Cow position: | chr19:23615071-23614847 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 165, 178 |
| Conread position: | 11-236 |
| Cow position: | chr19:20635170-20635395 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 11-236 |
| Cow position: | chr19:20678246-20678021 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-237 |
| Cow position: | chr19:14940367-14940141 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 161, 171 |
| Conread position: | 11-238 |
| Cow position: | chr19:23613811-23613584 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 155, 171 |
| Conread position: | 11-238 |
| Cow position: | chr19:23614315-23614088 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-238 |
| Cow position: | chr19:43570013-43570240 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-289 |
| Cow position: | chr19:14959764-14960040 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 147, 51 |
| Conread position: | 11-290 |
| Cow position: | chr19:23614483-23614204 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 148, 159 |
| Conread position: | 11-291 |
| Cow position: | chr19:23613727-23613447 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 165, 177 |
| Conread position: | 11-294 |
| Cow position: | chr19:14940703-14940420 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 233, 228 |
| Conread position: | 12-218 |
| Cow position: | chr19:20678329-20678123 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 146, 159 |
| Conread position: | 12-224 |
| Cow position: | chr19:23597575-23597363 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 160, 170 |
| Conread position: | 12-232 |
| Cow position: | chr19:23613558-23613337 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 12-234 |
| Cow position: | chr19:23614230-23614008 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 167, 160 |
| Conread position: | 12-235 |
| Cow position: | chr19:14959359-14959582 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-235 |
| Cow position: | chr19:23614650-23614427 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-236 |
| Cow position: | chr19:20635423-20635647 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-238 |
| Cow position: | chr19:14960099-14960323 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 12-238 |
| Cow position: | chr19:23614566-23614340 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-284 |
| Cow position: | chr19:43570098-43570360 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 12-368 |
| Cow position: | chr19:23614062-23613697 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 220, 272 |
| Conread position: | 13-217 |
| Cow position: | chr19:43569847-43570051 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 159, 169 |
| Conread position: | 13-235 |
| Cow position: | chr19:23649931-23649709 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 92 |
| Conread position: | 14-234 |
| Cow position: | chr19:20635341-20635561 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 159, 168 |
| Conread position: | 14-236 |
| Cow position: | chr19:20678663-20678441 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 141, 132 |
| Conread position: | 14-238 |
| Cow position: | chr19:23614144-23613920 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-291 |
| Cow position: | chr19:14940868-14940591 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.