Cow genome map
| Conread name: | Mixc-0036n02 |
| Conread position: | 1-235 |
| Cow position: | chr22:12384943-12385177 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-238 |
| Cow position: | chr22:11641161-11640924 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 109, 91 |
| Conread position: | 1-238 |
| Cow position: | chr22:12385363-12385602 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 148 |
| Conread position: | 1-238 |
| Cow position: | chr22:12419077-12419314 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 171, 181 |
| Conread position: | 1-238 |
| Cow position: | chr22:12458221-12458458 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-281 |
| Cow position: | chr22:12475582-12475862 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-290 |
| Cow position: | chr22:12398785-12399074 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-291 |
| Cow position: | chr22:12475414-12475704 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-291 |
| Cow position: | chr22:12499845-12499555 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-222 |
| Cow position: | chr22:12476171-12476392 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 106, 101 |
| Conread position: | 2-222 |
| Cow position: | chr22:12499088-12498867 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 106, 101 |
| Conread position: | 2-233 |
| Cow position: | chr22:12475499-12475730 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 165, 174 |
| Conread position: | 2-233 |
| Cow position: | chr22:12499760-12499529 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 165, 174 |
| Conread position: | 2-238 |
| Cow position: | chr22:12457886-12458122 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 164, 170 |
| Conread position: | 2-238 |
| Cow position: | chr22:12475331-12475567 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 171, 180 |
| Conread position: | 2-238 |
| Cow position: | chr22:12499172-12498936 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 175, 144 |
| Conread position: | 2-238 |
| Cow position: | chr22:12499928-12499692 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-281 |
| Cow position: | chr22:12476087-12476366 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 175, 144 |
| Conread position: | 4-235 |
| Cow position: | chr22:12499422-12499191 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 162, 178 |
| Conread position: | 4-237 |
| Cow position: | chr22:12499254-12499021 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-238 |
| Cow position: | chr22:12475669-12475903 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 163, 178 |
| Conread position: | 4-238 |
| Cow position: | chr22:12499590-12499356 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 168, 179 |
| Conread position: | 4-290 |
| Cow position: | chr22:12475837-12476123 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 162, 178 |
| Conread position: | 4-366 |
| Cow position: | chr22:12385282-12385655 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 127, 170 |
| Conread position: | 5-238 |
| Cow position: | chr22:12385199-12385434 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 166, 171 |
| Conread position: | 5-238 |
| Cow position: | chr22:12399125-12399358 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-238 |
| Cow position: | chr22:12399209-12399442 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-290 |
| Cow position: | chr22:12399293-12399578 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-224 |
| Cow position: | chr22:12385116-12385334 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 165, 176 |
| Conread position: | 6-224 |
| Cow position: | chr22:12499504-12499286 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-228 |
| Cow position: | chr22:12475755-12475977 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-233 |
| Cow position: | chr22:12399042-12399269 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 166, 174 |
| Conread position: | 6-234 |
| Cow position: | chr22:12399546-12399774 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 175, 167 |
| Conread position: | 6-238 |
| Cow position: | chr22:11641324-11641092 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-238 |
| Cow position: | chr22:12430854-12431086 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 96, 87 |
| Conread position: | 7-235 |
| Cow position: | chr22:12418730-12418958 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 160, 175 |
| Conread position: | 7-238 |
| Cow position: | chr22:12398875-12399106 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-368 |
| Cow position: | chr22:12385033-12385403 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 233, 272 |
| Conread position: | 10-235 |
| Cow position: | chr22:14468185-14467960 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 11-235 |
| Cow position: | chr22:12458399-12458623 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 161, 171 |
| Conread position: | 11-238 |
| Cow position: | chr22:12431111-12431338 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 156, 163 |
| Conread position: | 12-218 |
| Cow position: | chr22:12431196-12431402 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 146, 158 |
| Conread position: | 12-219 |
| Cow position: | chr22:12431616-12431823 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 138, 134 |
| Conread position: | 12-224 |
| Cow position: | chr22:14429854-14429642 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 12-237 |
| Cow position: | chr22:12476013-12476238 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-238 |
| Cow position: | chr22:12418651-12418877 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-238 |
| Cow position: | chr22:12431448-12431674 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 152, 170 |
| Conread position: | 12-238 |
| Cow position: | chr22:12499666-12499440 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-291 |
| Cow position: | chr22:12458064-12458343 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 160, 170 |
| Conread position: | 13-235 |
| Cow position: | chr22:12399385-12399607 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-235 |
| Cow position: | chr22:12475930-12476152 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 159, 169 |
| Conread position: | 13-245 |
| Cow position: | chr22:12432205-12432438 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 14-218 |
| Cow position: | chr22:12431534-12431738 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 158, 168 |
| Conread position: | 14-220 |
| Cow position: | chr22:12385462-12385668 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 159, 173 |
| Conread position: | 14-236 |
| Cow position: | chr22:14468265-14468043 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 92 |
| Conread position: | 14-238 |
| Cow position: | chr22:12398966-12399190 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 152, 168 |
| Conread position: | 14-368 |
| Cow position: | chr22:12457982-12458345 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 72, 89 |
| Conread position: | 15-218 |
| Cow position: | chr22:12457815-12458018 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 152, 167 |
| Conread position: | 18-222 |
| Cow position: | chr22:12430950-12431153 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 18-233 |
| Cow position: | chr22:12432126-12432341 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 154, 158 |
| Conread position: | 18-271 |
| Cow position: | chr22:11666649-11666396 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 18-271 |
| Cow position: | chr22:11701303-11701050 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 22-238 |
| Cow position: | chr22:12399478-12399694 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-234 |
| Cow position: | chr22:12430799-12430998 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 132, 147 |
| Conread position: | 42-238 |
| Cow position: | chr22:12475287-12475483 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 130, 140 |
| Conread position: | 42-291 |
| Cow position: | chr22:12499972-12499723 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 213, 198 |
| Conread position: | 54-234 |
| Cow position: | chr22:12398754-12398934 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.