• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Mixc-0039,k14
        

               
Conread position:
               
1-394
               

               
Cow position:
               
chr6:38594969-38594569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
64, 152
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr6:54357849-54357438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 115
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr6:32211093-32210627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 87
               

               
Conread position:
               
1-516
               

               
Cow position:
               
chr6:16737553-16738072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 273
               

               
Conread position:
               
1-519
               

               
Cow position:
               
chr6:13741230-13741757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 225
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr6:12629551-12630079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 98
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chr6:2088192-2088589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
2-395
               

               
Cow position:
               
chr6:38900224-38899818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 183
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr6:32262458-32262033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
116, 69
               

               
Conread position:
               
2-447
               

               
Cow position:
               
chr6:65910008-65910462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 326
               

               
Conread position:
               
2-534
               

               
Cow position:
               
chr6:28147789-28148326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 168
               

               
Conread position:
               
2-534
               

               
Cow position:
               
chr6:29077261-29077805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 204
               

               
Conread position:
               
2-537
               

               
Cow position:
               
chr6:17556914-17557454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 13
               

               
Conread position:
               
2-538
               

               
Cow position:
               
chr6:27852173-27851631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 274
               

               
Conread position:
               
2-563
               

               
Cow position:
               
chr6:35725619-35726198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
51, 98
               

               
Conread position:
               
2-601
               

               
Cow position:
               
chr6:64431480-64432078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 145
               

               
Conread position:
               
2-603
               

               
Cow position:
               
chr6:46570659-46571248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 74
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chr6:33509119-33509473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
3-421
               

               
Cow position:
               
chr6:28558971-28559386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 151
               

               
Conread position:
               
3-434
               

               
Cow position:
               
chr6:46666641-46667087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 164
               

               
Conread position:
               
3-439
               

               
Cow position:
               
chr6:50120251-50119806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 237
               

               
Conread position:
               
3-443
               

               
Cow position:
               
chr6:21312221-21311764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 231
               

               
Conread position:
               
3-444
               

               
Cow position:
               
chr6:1784231-1783792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 216
               

               
Conread position:
               
3-447
               

               
Cow position:
               
chr6:1817331-1816876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 271
               

               
Conread position:
               
3-449
               

               
Cow position:
               
chr6:25358611-25359064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 279
               

               
Conread position:
               
3-455
               

               
Cow position:
               
chr6:12387791-12387330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 155
               

               
Conread position:
               
3-460
               

               
Cow position:
               
chr6:2012557-2013019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 98
               

               
Conread position:
               
3-461
               

               
Cow position:
               
chr6:61575127-61575610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 302
               

               
Conread position:
               
3-464
               

               
Cow position:
               
chr6:2607148-2607619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 228
               

               
Conread position:
               
3-464
               

               
Cow position:
               
chr6:10332574-10332086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 393
               

               
Conread position:
               
3-467
               

               
Cow position:
               
chr6:15046560-15046073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
61, 153
               

               
Conread position:
               
3-489
               

               
Cow position:
               
chr6:54647991-54647492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 80
               

               
Conread position:
               
3-490
               

               
Cow position:
               
chr6:6613975-6614467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 8
               

               
Conread position:
               
3-490
               

               
Cow position:
               
chr6:55040683-55040184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 280
               

               
Conread position:
               
3-510
               

               
Cow position:
               
chr6:9733297-9732792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 199
               

               
Conread position:
               
3-512
               

               
Cow position:
               
chr6:47540058-47540582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 425
               

               
Conread position:
               
3-517
               

               
Cow position:
               
chr6:48807451-48806932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 50
               

               
Conread position:
               
3-519
               

               
Cow position:
               
chr6:5958477-5957972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
3-519
               

               
Cow position:
               
chr6:14839491-14838969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 270
               

               
Conread position:
               
3-519
               

               
Cow position:
               
chr6:58075756-58076286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 243
               

               
Conread position:
               
3-524
               

               
Cow position:
               
chr6:16410738-16411252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 71
               

               
Conread position:
               
3-527
               

               
Cow position:
               
chr6:643059-642504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 483
               

               
Conread position:
               
3-527
               

               
Cow position:
               
chr6:34075560-34076093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 238
               

               
Conread position:
               
3-529
               

               
Cow position:
               
chr6:18961986-18961449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 198
               

               
Conread position:
               
3-533
               

               
Cow position:
               
chr6:3979128-3978596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 237
               

               
Conread position:
               
3-537
               

               
Cow position:
               
chr6:52556940-52556407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 241
               

               
Conread position:
               
3-539
               

               
Cow position:
               
chr6:11192900-11192388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
3-539
               

               
Cow position:
               
chr6:44098622-44099162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 145
               

               
Conread position:
               
3-549
               

               
Cow position:
               
chr6:35181710-35181168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
3-551
               

               
Cow position:
               
chr6:606797-607354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 424
               

               
Conread position:
               
3-558
               

               
Cow position:
               
chr6:46292795-46292250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 121
               

               
Conread position:
               
3-558
               

               
Cow position:
               
chr6:53178171-53178727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 280
               

               
Conread position:
               
3-561
               

               
Cow position:
               
chr6:4468298-4468869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 68
               

               
Conread position:
               
3-563
               

               
Cow position:
               
chr6:18987756-18988312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 134
               

               
Conread position:
               
3-564
               

               
Cow position:
               
chr6:1770659-1770094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 41
               

               
Conread position:
               
3-564
               

               
Cow position:
               
chr6:39093300-39093855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
3-566
               

               
Cow position:
               
chr6:43345905-43345336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 55
               

               
Conread position:
               
3-569
               

               
Cow position:
               
chr6:16625475-16626058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 278
               

               
Conread position:
               
3-580
               

               
Cow position:
               
chr6:10695394-10695980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 162
               

               
Conread position:
               
3-601
               

               
Cow position:
               
chr6:5302865-5302279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 225
               

               
Conread position:
               
3-601
               

               
Cow position:
               
chr6:6068153-6067560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 230
               

               
Conread position:
               
3-601
               

               
Cow position:
               
chr6:8562255-8562859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 69
               

               
Conread position:
               
3-601
               

               
Cow position:
               
chr6:12550802-12551410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 271
               

               
Conread position:
               
3-601
               

               
Cow position:
               
chr6:46465363-46465962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
3-601
               

               
Cow position:
               
chr6:51834938-51835539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
3-601
               

               
Cow position:
               
chr6:53933313-53932706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 135
               

               
Conread position:
               
3-603
               

               
Cow position:
               
chr6:4865001-4864404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 80
               

               
Conread position:
               
3-603
               

               
Cow position:
               
chr6:13688277-13687671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 73
               

               
Conread position:
               
3-603
               

               
Cow position:
               
chr6:15938310-15937712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 128
               

               
Conread position:
               
3-603
               

               
Cow position:
               
chr6:23695532-23696143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 271
               

               
Conread position:
               
3-603
               

               
Cow position:
               
chr6:39358797-39358198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 71
               

               
Conread position:
               
3-603
               

               
Cow position:
               
chr6:40031728-40032333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 271
               

               
Conread position:
               
3-603
               

               
Cow position:
               
chr6:47339829-47339213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 355
               

               
Conread position:
               
3-603
               

               
Cow position:
               
chr6:52478909-52478268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 484
               

               
Conread position:
               
3-603
               

               
Cow position:
               
chr6:67214279-67214892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 76
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr6:25783840-25784252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 294
               

               
Conread position:
               
4-426
               

               
Cow position:
               
chr6:49411141-49410725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 181
               

               
Conread position:
               
4-443
               

               
Cow position:
               
chr6:6721658-6722085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
4-447
               

               
Cow position:
               
chr6:6182042-6181583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 271
               

               
Conread position:
               
4-447
               

               
Cow position:
               
chr6:28112153-28111699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 270
               

               
Conread position:
               
4-447
               

               
Cow position:
               
chr6:55538590-55538134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 238
               

               
Conread position:
               
4-467
               

               
Cow position:
               
chr6:1891324-1890838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
4-484
               

               
Cow position:
               
chr6:60931368-60930873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
4-502
               

               
Cow position:
               
chr6:1887112-1886627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 237
               

               
Conread position:
               
4-534
               

               
Cow position:
               
chr6:36928186-36928732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 236
               

               
Conread position:
               
4-558
               

               
Cow position:
               
chr6:48567810-48567254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 349
               

               
Conread position:
               
4-569
               

               
Cow position:
               
chr6:58073572-58074157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 458
               

               
Conread position:
               
4-573
               

               
Cow position:
               
chr6:16699807-16700374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
4-602
               

               
Cow position:
               
chr6:8636811-8637423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 129
               

               
Conread position:
               
4-603
               

               
Cow position:
               
chr6:32121431-32122051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 452
               

               
Conread position:
               
4-603
               

               
Cow position:
               
chr6:42565222-42565830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 294
               

               
Conread position:
               
5-395
               

               
Cow position:
               
chr6:7253902-7253486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr6:12623007-12623448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 89
               

               
Conread position:
               
5-549
               

               
Cow position:
               
chr6:11169251-11169787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
5-571
               

               
Cow position:
               
chr6:51674451-51675020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
6-441
               

               
Cow position:
               
chr6:53345334-53345779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
6-601
               

               
Cow position:
               
chr6:36471030-36470421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
6-603
               

               
Cow position:
               
chr6:8210044-8209463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 93
               

               
Conread position:
               
6-603
               

               
Cow position:
               
chr6:66532242-66531679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 58
               

               
Conread position:
               
7-460
               

               
Cow position:
               
chr6:58439530-58439961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 142
               

               
Conread position:
               
7-603
               

               
Cow position:
               
chr6:9751512-9750914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 138
               

               
Conread position:
               
8-550
               

               
Cow position:
               
chr6:9322681-9323234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
9-459
               

               
Cow position:
               
chr6:32916377-32915925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
9-537
               

               
Cow position:
               
chr6:28476707-28477242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 127
               

               
Conread position:
               
10-434
               

               
Cow position:
               
chr6:9375820-9375393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 65
               

               
Conread position:
               
10-603
               

               
Cow position:
               
chr6:143817-143232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 34
               

               
Conread position:
               
11-456
               

               
Cow position:
               
chr6:10605226-10605684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 397
               

               
Conread position:
               
11-537
               

               
Cow position:
               
chr6:44372406-44371872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 200
               

               
Conread position:
               
12-565
               

               
Cow position:
               
chr6:28084479-28083916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
12-603
               

               
Cow position:
               
chr6:24030918-24031519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 150
               

               
Conread position:
               
16-571
               

               
Cow position:
               
chr6:18049480-18048913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 260
               

               
Conread position:
               
16-587
               

               
Cow position:
               
chr6:36651971-36652549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
20-430
               

               
Cow position:
               
chr6:6187816-6188222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
44, 182
               

               
Conread position:
               
20-532
               

               
Cow position:
               
chr6:37634348-37634859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 66
               

               
Conread position:
               
20-563
               

               
Cow position:
               
chr6:5095999-5095438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 126
               

               
Conread position:
               
26-477
               

               
Cow position:
               
chr6:1174944-1174468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 254
               

               
Conread position:
               
28-603
               

               
Cow position:
               
chr6:38770862-38771423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 131
               

               
Conread position:
               
30-587
               

               
Cow position:
               
chr6:29210061-29210622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 234
               

               
Conread position:
               
30-603
               

               
Cow position:
               
chr6:17414892-17414302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 305
               

               
Conread position:
               
34-603
               

               
Cow position:
               
chr6:32269287-32268745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 98
               

               
Conread position:
               
35-406
               

               
Cow position:
               
chr6:60017640-60018013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 112
               

               
Conread position:
               
42-519
               

               
Cow position:
               
chr6:46205593-46206069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
43-603
               

               
Cow position:
               
chr6:24781995-24781417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 237
               

               
Conread position:
               
44-529
               

               
Cow position:
               
chr6:38233568-38234025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 132
               

               
Conread position:
               
44-603
               

               
Cow position:
               
chr6:29484687-29485226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 174
               

               
Conread position:
               
45-537
               

               
Cow position:
               
chr6:31636118-31635614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 231
               

               
Conread position:
               
46-603
               

               
Cow position:
               
chr6:65870604-65871179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 129
               

               
Conread position:
               
49-454
               

               
Cow position:
               
chr6:41824248-41823827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 362
               

               
Conread position:
               
51-603
               

               
Cow position:
               
chr6:9009012-9008469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
55-456
               

               
Cow position:
               
chr6:24327554-24327145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 236
               

               
Conread position:
               
55-601
               

               
Cow position:
               
chr6:17090174-17090739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 229
               

               
Conread position:
               
55-603
               

               
Cow position:
               
chr6:35103734-35103185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 176
               

               
Conread position:
               
57-431
               

               
Cow position:
               
chr6:45691019-45690618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 231
               

               
Conread position:
               
58-412
               

               
Cow position:
               
chr6:10649434-10649071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 237
               

               
Conread position:
               
58-563
               

               
Cow position:
               
chr6:32125657-32126159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 341
               

               
Conread position:
               
58-563
               

               
Cow position:
               
chr6:66363655-66363131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 322
               

               
Conread position:
               
58-578
               

               
Cow position:
               
chr6:62925410-62924879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 125
               

               
Conread position:
               
62-603
               

               
Cow position:
               
chr6:49399023-49398477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 396
               

               
Conread position:
               
65-571
               

               
Cow position:
               
chr6:56849595-56850130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 301
               

               
Conread position:
               
67-601
               

               
Cow position:
               
chr6:16706613-16707153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
74-456
               

               
Cow position:
               
chr6:33302019-33302407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 133
               

               
Conread position:
               
78-563
               

               
Cow position:
               
chr6:21004268-21004780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 181
               

               
Conread position:
               
84-538
               

               
Cow position:
               
chr6:25407786-25407318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
85-447
               

               
Cow position:
               
chr6:34842940-34842567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 257
               

               
Conread position:
               
85-561
               

               
Cow position:
               
chr6:6642966-6642507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
85-564
               

               
Cow position:
               
chr6:59597276-59597752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 262
               

               
Conread position:
               
85-603
               

               
Cow position:
               
chr6:14958723-14958197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
90-603
               

               
Cow position:
               
chr6:6060933-6060429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 257
               

               
Conread position:
               
91-553
               

               
Cow position:
               
chr6:8804918-8804438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 114
               

               
Conread position:
               
94-539
               

               
Cow position:
               
chr6:52248494-52248056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 60
               

               
Conread position:
               
96-383
               

               
Cow position:
               
chr6:16492276-16491994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
103-558
               

               
Cow position:
               
chr6:444966-445421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 133
               

               
Conread position:
               
106-576
               

               
Cow position:
               
chr6:54140466-54140913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 21
               

               
Conread position:
               
106-603
               

               
Cow position:
               
chr6:2546886-2547398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 49
               

               
Conread position:
               
107-461
               

               
Cow position:
               
chr6:12927766-12928120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 107
               

               
Conread position:
               
108-596
               

               
Cow position:
               
chr6:31535912-31535433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 42
               

               
Conread position:
               
111-508
               

               
Cow position:
               
chr6:20231173-20230781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
113-603
               

               
Cow position:
               
chr6:35842310-35842800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 147
               

               
Conread position:
               
114-589
               

               
Cow position:
               
chr6:26728879-26728403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 158
               

               
Conread position:
               
115-423
               

               
Cow position:
               
chr6:68297930-68297624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
115-430
               

               
Cow position:
               
chr6:55608155-55607841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 247
               

               
Conread position:
               
115-490
               

               
Cow position:
               
chr6:66431496-66431847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 196
               

               
Conread position:
               
116-410
               

               
Cow position:
               
chr6:12844962-12845263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 160
               

               
Conread position:
               
116-470
               

               
Cow position:
               
chr6:57685812-57686164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
116-529
               

               
Cow position:
               
chr6:22968708-22969149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 315
               

               
Conread position:
               
116-569
               

               
Cow position:
               
chr6:8318513-8318054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 67
               

               
Conread position:
               
116-582
               

               
Cow position:
               
chr6:63047229-63047714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 72
               

               
Conread position:
               
116-594
               

               
Cow position:
               
chr6:24004199-24004670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 165
               

               
Conread position:
               
116-601
               

               
Cow position:
               
chr6:10106348-10105838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 373
               

               
Conread position:
               
116-601
               

               
Cow position:
               
chr6:35990574-35990093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
116-603
               

               
Cow position:
               
chr6:5609797-5609304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
116-603
               

               
Cow position:
               
chr6:15305241-15305711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 119
               

               
Conread position:
               
122-445
               

               
Cow position:
               
chr6:24631419-24631104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
60, 91
               

               
Conread position:
               
124-588
               

               
Cow position:
               
chr6:36195874-36196338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 294
               

               
Conread position:
               
124-603
               

               
Cow position:
               
chr6:54867179-54867660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 50
               

               
Conread position:
               
125-456
               

               
Cow position:
               
chr6:16634548-16634221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 91
               

               
Conread position:
               
130-529
               

               
Cow position:
               
chr6:28482680-28483081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 339
               

               
Conread position:
               
130-603
               

               
Cow position:
               
chr6:15242520-15242979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 47
               

               
Conread position:
               
131-469
               

               
Cow position:
               
chr6:12934473-12934126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
132-587
               

               
Cow position:
               
chr6:10176630-10176175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
137-414
               

               
Cow position:
               
chr6:3936220-3936495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 89
               

               
Conread position:
               
137-529
               

               
Cow position:
               
chr6:5445321-5445689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
45, 78
               

               
Conread position:
               
138-533
               

               
Cow position:
               
chr6:50446085-50445695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 131
               

               
Conread position:
               
139-561
               

               
Cow position:
               
chr6:48281671-48282093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
143-534
               

               
Cow position:
               
chr6:28148524-28148905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 114
               

               
Conread position:
               
144-538
               

               
Cow position:
               
chr6:561300-561701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
38, 99
               

               
Conread position:
               
144-603
               

               
Cow position:
               
chr6:44078197-44078657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
146-516
               

               
Cow position:
               
chr6:47625276-47624908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 30
               

               
Conread position:
               
146-558
               

               
Cow position:
               
chr6:60859621-60859203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
150-603
               

               
Cow position:
               
chr6:12337671-12338142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 119
               

               
Conread position:
               
150-603
               

               
Cow position:
               
chr6:12500543-12500992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 220
               

               
Conread position:
               
152-495
               

               
Cow position:
               
chr6:40264511-40264167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
16, 188
               

               
Conread position:
               
152-603
               

               
Cow position:
               
chr6:19681828-19681382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
157-399
               

               
Cow position:
               
chr6:17248425-17248675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 154
               

               
Conread position:
               
161-603
               

               
Cow position:
               
chr6:31525749-31526189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
165-438
               

               
Cow position:
               
chr6:19508730-19508461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
166-515
               

               
Cow position:
               
chr6:58172890-58173237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
18, 69
               

               
Conread position:
               
170-477
               

               
Cow position:
               
chr6:19330047-19329738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
13, 5
               

               
Conread position:
               
172-519
               

               
Cow position:
               
chr6:62479457-62479104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 96
               

               
Conread position:
               
175-603
               

               
Cow position:
               
chr6:34196437-34196006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 169
               

               
Conread position:
               
180-447
               

               
Cow position:
               
chr6:12389816-12390087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
181-529
               

               
Cow position:
               
chr6:57164145-57164495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 102
               

               
Conread position:
               
181-565
               

               
Cow position:
               
chr6:61515481-61515083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 89
               

               
Conread position:
               
181-581
               

               
Cow position:
               
chr6:54369178-54368783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 55
               

               
Conread position:
               
181-603
               

               
Cow position:
               
chr6:7131153-7130737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 156
               

               
Conread position:
               
182-430
               

               
Cow position:
               
chr6:21534778-21535027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 159
               

               
Conread position:
               
183-564
               

               
Cow position:
               
chr6:51387486-51387854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
59, 55
               

               
Conread position:
               
186-428
               

               
Cow position:
               
chr6:34235711-34235467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
188-558
               

               
Cow position:
               
chr6:42961642-42961265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 248
               

               
Conread position:
               
188-558
               

               
Cow position:
               
chr6:50746702-50747095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 121
               

               
Conread position:
               
190-565
               

               
Cow position:
               
chr6:54365596-54365223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 91
               

               
Conread position:
               
194-563
               

               
Cow position:
               
chr6:35471795-35471406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 262
               

               
Conread position:
               
198-402
               

               
Cow position:
               
chr6:35769747-35769539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
201-524
               

               
Cow position:
               
chr6:54293849-54294163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 154
               

               
Conread position:
               
205-490
               

               
Cow position:
               
chr6:32335562-32335831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
180, 29
               

               
Conread position:
               
206-563
               

               
Cow position:
               
chr6:64449135-64449481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 102
               

               
Conread position:
               
209-563
               

               
Cow position:
               
chr6:3952271-3952622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
213-603
               

               
Cow position:
               
chr6:26915080-26915471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
29, 239
               

               
Conread position:
               
214-443
               

               
Cow position:
               
chr6:3719257-3719018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
34, 142
               

               
Conread position:
               
214-519
               

               
Cow position:
               
chr6:53710867-53711171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
214-550
               

               
Cow position:
               
chr6:58732561-58732221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
214-571
               

               
Cow position:
               
chr6:40713748-40713392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
215-603
               

               
Cow position:
               
chr6:54132571-54132955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
217-415
               

               
Cow position:
               
chr6:1002480-1002277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
218-603
               

               
Cow position:
               
chr6:38853903-38853516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 206
               

               
Conread position:
               
220-565
               

               
Cow position:
               
chr6:7174013-7173644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 248
               

               
Conread position:
               
220-603
               

               
Cow position:
               
chr6:54991235-54990858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 48
               

               
Conread position:
               
222-477
               

               
Cow position:
               
chr6:7103476-7103213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
222-563
               

               
Cow position:
               
chr6:61113509-61113871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 288
               

               
Conread position:
               
223-602
               

               
Cow position:
               
chr6:41375513-41375910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
224-603
               

               
Cow position:
               
chr6:20098203-20097816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 226
               

               
Conread position:
               
226-493
               

               
Cow position:
               
chr6:13040215-13040486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
16, 200
               

               
Conread position:
               
227-603
               

               
Cow position:
               
chr6:67950724-67951092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 7
               

               
Conread position:
               
229-539
               

               
Cow position:
               
chr6:21542085-21542402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 5
               

               
Conread position:
               
229-588
               

               
Cow position:
               
chr6:3929088-3929448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
13, 6
               

               
Conread position:
               
230-501
               

               
Cow position:
               
chr6:54885146-54884865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
12, 225
               

               
Conread position:
               
230-519
               

               
Cow position:
               
chr6:45160521-45160242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 5
               

               
Conread position:
               
232-503
               

               
Cow position:
               
chr6:602861-603136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
234-422
               

               
Cow position:
               
chr6:51398574-51398764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
76, 8
               

               
Conread position:
               
234-422
               

               
Cow position:
               
chr6:59302051-59301857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
76, 9
               

               
Conread position:
               
234-443
               

               
Cow position:
               
chr6:20605705-20605920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
8, 34
               

               
Conread position:
               
234-467
               

               
Cow position:
               
chr6:388944-389182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
76, 8
               

               
Conread position:
               
234-468
               

               
Cow position:
               
chr6:14201469-14201709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
8, 167
               

               
Conread position:
               
234-476
               

               
Cow position:
               
chr6:30786376-30786141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
75, 103
               

               
Conread position:
               
234-534
               

               
Cow position:
               
chr6:7824536-7824836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
234-596
               

               
Cow position:
               
chr6:16103431-16103061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
8, 100
               

               
Conread position:
               
234-603
               

               
Cow position:
               
chr6:60350528-60350149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 236
               

               
Conread position:
               
235-529
               

               
Cow position:
               
chr6:60239616-60239329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
237-563
               

               
Cow position:
               
chr6:20157100-20157437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
238-603
               

               
Cow position:
               
chr6:55282513-55282150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
88, 29
               

               
Conread position:
               
239-558
               

               
Cow position:
               
chr6:54430596-54430928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
71, 217
               

               
Conread position:
               
240-603
               

               
Cow position:
               
chr6:16423476-16423844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
241-527
               

               
Cow position:
               
chr6:49685364-49685648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
65, 140
               

               
Conread position:
               
241-529
               

               
Cow position:
               
chr6:3374790-3374499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
241-534
               

               
Cow position:
               
chr6:41733406-41733698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
68, 102
               

               
Conread position:
               
241-564
               

               
Cow position:
               
chr6:130385-130059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
241-564
               

               
Cow position:
               
chr6:29239722-29240043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
241-565
               

               
Cow position:
               
chr6:48573103-48572774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
69, 23
               

               
Conread position:
               
241-587
               

               
Cow position:
               
chr6:7190340-7189992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 131
               

               
Conread position:
               
241-601
               

               
Cow position:
               
chr6:38207716-38207349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
241-603
               

               
Cow position:
               
chr6:4383272-4383621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
241-603
               

               
Cow position:
               
chr6:46860388-46860025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
241-603
               

               
Cow position:
               
chr6:68049215-68049560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
242-440
               

               
Cow position:
               
chr6:55366543-55366335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
242-601
               

               
Cow position:
               
chr6:21110749-21111092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
243-520
               

               
Cow position:
               
chr6:25773600-25773328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
67, 100
               

               
Conread position:
               
243-555
               

               
Cow position:
               
chr6:37199768-37199435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
30, 224
               

               
Conread position:
               
243-594
               

               
Cow position:
               
chr6:27110372-27110731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
244-504
               

               
Cow position:
               
chr6:18968992-18968739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
245-520
               

               
Cow position:
               
chr6:56041839-56041566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
65, 170
               

               
Conread position:
               
245-557
               

               
Cow position:
               
chr6:24223378-24223061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
245-603
               

               
Cow position:
               
chr6:53651823-53652183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
36, 170
               

               
Conread position:
               
246-442
               

               
Cow position:
               
chr6:7694569-7694365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
89, 21
               

               
Conread position:
               
246-446
               

               
Cow position:
               
chr6:6460326-6460530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
246-447
               

               
Cow position:
               
chr6:1474980-1475177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
46, 21
               

               
Conread position:
               
246-455
               

               
Cow position:
               
chr6:38895291-38895085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
246-469
               

               
Cow position:
               
chr6:39994677-39994452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
64, 162
               

               
Conread position:
               
246-478
               

               
Cow position:
               
chr6:1907323-1907557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
24, 162
               

               
Conread position:
               
246-489
               

               
Cow position:
               
chr6:10635961-10636204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
246-508
               

               
Cow position:
               
chr6:48344112-48344378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 209
               

               
Conread position:
               
246-519
               

               
Cow position:
               
chr6:67304586-67304861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
246-523
               

               
Cow position:
               
chr6:34031452-34031721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
64, 79
               

               
Conread position:
               
246-524
               

               
Cow position:
               
chr6:10254026-10254302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
246-529
               

               
Cow position:
               
chr6:40774564-40774266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
63, 90
               

               
Conread position:
               
246-534
               

               
Cow position:
               
chr6:30474115-30474394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
246-537
               

               
Cow position:
               
chr6:242598-242875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
246-557
               

               
Cow position:
               
chr6:16746124-16746440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
81, 74
               

               
Conread position:
               
246-563
               

               
Cow position:
               
chr6:60442203-60442513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
246-565
               

               
Cow position:
               
chr6:9026301-9026625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
73, 252
               

               
Conread position:
               
246-587
               

               
Cow position:
               
chr6:899500-899166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
114, 50
               

               
Conread position:
               
246-587
               

               
Cow position:
               
chr6:45065222-45064890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 80
               

               
Conread position:
               
246-597
               

               
Cow position:
               
chr6:38614608-38614949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 97
               

               
Conread position:
               
246-601
               

               
Cow position:
               
chr6:36202612-36202959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
63, 166
               

               
Conread position:
               
246-601
               

               
Cow position:
               
chr6:38440966-38441313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 119
               

               
Conread position:
               
246-603
               

               
Cow position:
               
chr6:8965874-8966240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 33
               

               
Conread position:
               
246-603
               

               
Cow position:
               
chr6:24468608-24468253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
246-603
               

               
Cow position:
               
chr6:28977247-28976897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
30, 92
               

               
Conread position:
               
246-603
               

               
Cow position:
               
chr6:44194761-44194407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
64, 191
               

               
Conread position:
               
246-603
               

               
Cow position:
               
chr6:53460787-53460424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
247-404
               

               
Cow position:
               
chr6:21184741-21184903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
247-455
               

               
Cow position:
               
chr6:66453586-66453794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
63, 189
               

               
Conread position:
               
247-456
               

               
Cow position:
               
chr6:30315272-30315055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
62, 26
               

               
Conread position:
               
247-480
               

               
Cow position:
               
chr6:15923212-15922979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
247-490
               

               
Cow position:
               
chr6:61130697-61130447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
64, 206
               

               
Conread position:
               
247-505
               

               
Cow position:
               
chr6:30826249-30825989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
247-530
               

               
Cow position:
               
chr6:31425778-31425493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 160
               

               
Conread position:
               
247-564
               

               
Cow position:
               
chr6:19401647-19401954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
64, 89
               

               
Conread position:
               
247-587
               

               
Cow position:
               
chr6:17997530-17997193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 190
               

               
Conread position:
               
247-597
               

               
Cow position:
               
chr6:35435788-35436131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
25, 108
               

               
Conread position:
               
247-601
               

               
Cow position:
               
chr6:54490955-54490596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
63, 89
               

               
Conread position:
               
247-603
               

               
Cow position:
               
chr6:66874147-66874492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 78
               

               
Conread position:
               
248-472
               

               
Cow position:
               
chr6:59620455-59620682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
62, 167
               

               
Conread position:
               
248-601
               

               
Cow position:
               
chr6:9452983-9452628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
248-603
               

               
Cow position:
               
chr6:51581473-51581113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 198
               

               
Conread position:
               
249-537
               

               
Cow position:
               
chr6:56376560-56376275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
61, 24
               

               
Conread position:
               
249-550
               

               
Cow position:
               
chr6:24961932-24962235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
61, 164
               

               
Conread position:
               
249-558
               

               
Cow position:
               
chr6:827919-827609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
249-587
               

               
Cow position:
               
chr6:31564546-31564211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
249-596
               

               
Cow position:
               
chr6:49002937-49002604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
249-601
               

               
Cow position:
               
chr6:15301030-15300692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
249-601
               

               
Cow position:
               
chr6:21869858-21869508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
62, 87
               

               
Conread position:
               
249-601
               

               
Cow position:
               
chr6:37148985-37149330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr6:2896539-2896723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
250-502
               

               
Cow position:
               
chr6:52025866-52025611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
250-504
               

               
Cow position:
               
chr6:24515405-24515157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
59, 180
               

               
Conread position:
               
250-550
               

               
Cow position:
               
chr6:57405336-57405035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
250-601
               

               
Cow position:
               
chr6:53025010-53024663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 174
               

               
Conread position:
               
251-466
               

               
Cow position:
               
chr6:53139140-53138916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
59, 208
               

               
Conread position:
               
251-603
               

               
Cow position:
               
chr6:23532452-23532797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
59, 165
               

               
Conread position:
               
252-534
               

               
Cow position:
               
chr6:44377056-44377340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
255-415
               

               
Cow position:
               
chr6:31928066-31928221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
255-480
               

               
Cow position:
               
chr6:28080104-28079875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 88
               

               
Conread position:
               
255-522
               

               
Cow position:
               
chr6:61137158-61137434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
255-529
               

               
Cow position:
               
chr6:47988983-47989238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
255-594
               

               
Cow position:
               
chr6:7989620-7989281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
56, 32
               

               
Conread position:
               
255-601
               

               
Cow position:
               
chr6:54864873-54864520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
255-603
               

               
Cow position:
               
chr6:19695600-19695949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
256-537
               

               
Cow position:
               
chr6:24545411-24545687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 101
               

               
Conread position:
               
256-602
               

               
Cow position:
               
chr6:6098488-6098124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 194
               

               
Conread position:
               
256-603
               

               
Cow position:
               
chr6:38641292-38641635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
257-565
               

               
Cow position:
               
chr6:15782730-15782409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
53, 192
               

               
Conread position:
               
258-424
               

               
Cow position:
               
chr6:51463820-51463647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 151
               

               
Conread position:
               
258-561
               

               
Cow position:
               
chr6:63252126-63251822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
259-551
               

               
Cow position:
               
chr6:48425524-48425235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 78
               

               
Conread position:
               
259-561
               

               
Cow position:
               
chr6:67456500-67456819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
51, 208
               

               
Conread position:
               
259-601
               

               
Cow position:
               
chr6:66131105-66131447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 72
               

               
Conread position:
               
259-603
               

               
Cow position:
               
chr6:6400745-6401093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
53, 195
               

               
Conread position:
               
260-537
               

               
Cow position:
               
chr6:10400097-10399830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
50, 93
               

               
Conread position:
               
260-544
               

               
Cow position:
               
chr6:14850917-14850630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
9, 189
               

               
Conread position:
               
260-571
               

               
Cow position:
               
chr6:28318207-28318508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
50, 83
               

               
Conread position:
               
260-603
               

               
Cow position:
               
chr6:528478-528141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
261-434
               

               
Cow position:
               
chr6:46245524-46245342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
261-601
               

               
Cow position:
               
chr6:21231335-21231665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
49, 82
               

               
Conread position:
               
261-603
               

               
Cow position:
               
chr6:59069829-59069477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
50, 179
               

               
Conread position:
               
263-475
               

               
Cow position:
               
chr6:33276840-33277057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 192
               

               
Conread position:
               
264-461
               

               
Cow position:
               
chr6:48187779-48187577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
47, 78
               

               
Conread position:
               
264-571
               

               
Cow position:
               
chr6:46865791-46865481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
46, 188
               

               
Conread position:
               
264-601
               

               
Cow position:
               
chr6:12092182-12091853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
266-556
               

               
Cow position:
               
chr6:21456886-21456587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
43, 230
               

               
Conread position:
               
267-521
               

               
Cow position:
               
chr6:53731326-53731582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
42, 185
               

               
Conread position:
               
267-537
               

               
Cow position:
               
chr6:3545509-3545768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
267-544
               

               
Cow position:
               
chr6:415899-416192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
48, 186
               

               
Conread position:
               
267-545
               

               
Cow position:
               
chr6:16191472-16191763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
267-563
               

               
Cow position:
               
chr6:22503118-22502807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 69
               

               
Conread position:
               
267-569
               

               
Cow position:
               
chr6:12652011-12652317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
46, 187
               

               
Conread position:
               
267-597
               

               
Cow position:
               
chr6:33918046-33917702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
43, 193
               

               
Conread position:
               
267-602
               

               
Cow position:
               
chr6:63720004-63720342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
269-491
               

               
Cow position:
               
chr6:57680629-57680401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 173
               

               
Conread position:
               
269-601
               

               
Cow position:
               
chr6:21062076-21061745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
269-601
               

               
Cow position:
               
chr6:53519816-53519483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 203
               

               
Conread position:
               
271-603
               

               
Cow position:
               
chr6:47355633-47355965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
39, 182
               

               
Conread position:
               
275-563
               

               
Cow position:
               
chr6:52412667-52412963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
35, 180
               

               
Conread position:
               
275-603
               

               
Cow position:
               
chr6:8788224-8787894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
275-603
               

               
Cow position:
               
chr6:47799111-47799436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
275-603
               

               
Cow position:
               
chr6:50577333-50577663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
36, 177
               

               
Conread position:
               
279-436
               

               
Cow position:
               
chr6:36011511-36011667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 64
               

               
Conread position:
               
281-420
               

               
Cow position:
               
chr6:37603342-37603484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
281-573
               

               
Cow position:
               
chr6:26910050-26909760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 146
               

               
Conread position:
               
281-587
               

               
Cow position:
               
chr6:25008533-25008845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
281-601
               

               
Cow position:
               
chr6:63299207-63298890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
281-603
               

               
Cow position:
               
chr6:47574724-47575049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 169
               

               
Conread position:
               
282-603
               

               
Cow position:
               
chr6:37783234-37783543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 154
               

               
Conread position:
               
283-476
               

               
Cow position:
               
chr6:46400584-46400395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
283-519
               

               
Cow position:
               
chr6:57274290-57274523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 123
               

               
Conread position:
               
283-570
               

               
Cow position:
               
chr6:1703635-1703910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
28, 166
               

               
Conread position:
               
283-596
               

               
Cow position:
               
chr6:52901062-52901374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
284-523
               

               
Cow position:
               
chr6:1499460-1499703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
25, 170
               

               
Conread position:
               
286-516
               

               
Cow position:
               
chr6:49604507-49604729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
286-603
               

               
Cow position:
               
chr6:58370583-58370893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
287-534
               

               
Cow position:
               
chr6:9838987-9839242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
28, 169
               

               
Conread position:
               
287-563
               

               
Cow position:
               
chr6:59104433-59104706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
23, 93
               

               
Conread position:
               
287-569
               

               
Cow position:
               
chr6:30973866-30974151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
23, 120
               

               
Conread position:
               
290-522
               

               
Cow position:
               
chr6:60819343-60819572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 162
               

               
Conread position:
               
290-548
               

               
Cow position:
               
chr6:65264707-65264458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
20, 48
               

               
Conread position:
               
290-563
               

               
Cow position:
               
chr6:17334229-17333949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
20, 165
               

               
Conread position:
               
290-603
               

               
Cow position:
               
chr6:65259639-65259349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
241, 62
               

               
Conread position:
               
291-524
               

               
Cow position:
               
chr6:54287909-54288137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
292-603
               

               
Cow position:
               
chr6:15447378-15447055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 161
               

               
Conread position:
               
293-489
               

               
Cow position:
               
chr6:53453599-53453803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 162
               

               
Conread position:
               
293-557
               

               
Cow position:
               
chr6:11246595-11246861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
293-603
               

               
Cow position:
               
chr6:35993408-35993726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
17, 152
               

               
Conread position:
               
294-506
               

               
Cow position:
               
chr6:58364180-58363965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
16, 155
               

               
Conread position:
               
294-601
               

               
Cow position:
               
chr6:19446092-19446391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
295-505
               

               
Cow position:
               
chr6:16764809-16764615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
295-539
               

               
Cow position:
               
chr6:19012902-19013150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
295-601
               

               
Cow position:
               
chr6:47640604-47640291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
14, 160
               

               
Conread position:
               
297-524
               

               
Cow position:
               
chr6:40834638-40834407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
13, 158
               

               
Conread position:
               
298-530
               

               
Cow position:
               
chr6:44984162-44984397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
12, 154
               

               
Conread position:
               
298-556
               

               
Cow position:
               
chr6:3595633-3595887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
89, 9
               

               
Conread position:
               
298-597
               

               
Cow position:
               
chr6:60783706-60784007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
12, 152
               

               
Conread position:
               
299-465
               

               
Cow position:
               
chr6:32987161-32986993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
299-550
               

               
Cow position:
               
chr6:59108779-59109035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
299-569
               

               
Cow position:
               
chr6:14914402-14914127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
299-602
               

               
Cow position:
               
chr6:15243088-15243397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 117
               

               
Conread position:
               
300-571
               

               
Cow position:
               
chr6:12543095-12542819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 148
               

               
Conread position:
               
302-563
               

               
Cow position:
               
chr6:55763694-55763957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
8, 150
               

               
Conread position:
               
302-603
               

               
Cow position:
               
chr6:120079-120388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
7, 96
               

               
Conread position:
               
305-603
               

               
Cow position:
               
chr6:57546372-57546086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
307-601
               

               
Cow position:
               
chr6:19264654-19264358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
30, 144
               

               
Conread position:
               
308-529
               

               
Cow position:
               
chr6:49694222-49694445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
308-603
               

               
Cow position:
               
chr6:7128553-7128261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
113, 76
               

               
Conread position:
               
308-603
               

               
Cow position:
               
chr6:60739862-60740157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 143
               

               
Conread position:
               
309-558
               

               
Cow position:
               
chr6:38609816-38610066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
52, 140
               

               
Conread position:
               
309-601
               

               
Cow position:
               
chr6:4692136-4691836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
33, 150
               

               
Conread position:
               
309-603
               

               
Cow position:
               
chr6:48112052-48112339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
314-536
               

               
Cow position:
               
chr6:9219126-9219344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
314-564
               

               
Cow position:
               
chr6:54036282-54036039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 88
               

               
Conread position:
               
314-603
               

               
Cow position:
               
chr6:46283145-46282861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
147, 102
               

               
Conread position:
               
316-603
               

               
Cow position:
               
chr6:582412-582130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
215, 25
               

               
Conread position:
               
321-558
               

               
Cow position:
               
chr6:48988297-48988528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
39, 132
               

               
Conread position:
               
322-517
               

               
Cow position:
               
chr6:30123332-30123134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 171
               

               
Conread position:
               
325-596
               

               
Cow position:
               
chr6:28156282-28156027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 107
               

               
Conread position:
               
329-522
               

               
Cow position:
               
chr6:19351286-19351099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
31, 121
               

               
Conread position:
               
329-603
               

               
Cow position:
               
chr6:57571345-57571622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
32, 120
               

               
Conread position:
               
330-550
               

               
Cow position:
               
chr6:12829353-12829135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
330-558
               

               
Cow position:
               
chr6:50984097-50984320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 26
               

               
Conread position:
               
330-564
               

               
Cow position:
               
chr6:16316179-16316420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
330-564
               

               
Cow position:
               
chr6:17313603-17313839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
30, 119
               

               
Conread position:
               
330-587
               

               
Cow position:
               
chr6:61608380-61608639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
330-603
               

               
Cow position:
               
chr6:38640100-38640376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
30, 118
               

               
Conread position:
               
330-603
               

               
Cow position:
               
chr6:53841630-53841363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
330-603
               

               
Cow position:
               
chr6:60118019-60118290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
331-603
               

               
Cow position:
               
chr6:48803767-48803496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 161
               

               
Conread position:
               
331-603
               

               
Cow position:
               
chr6:60667291-60667553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
332-558
               

               
Cow position:
               
chr6:1371356-1371128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
336-519
               

               
Cow position:
               
chr6:33150531-33150352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 114
               

               
Conread position:
               
336-557
               

               
Cow position:
               
chr6:4559428-4559208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 115
               

               
Conread position:
               
336-601
               

               
Cow position:
               
chr6:21234919-21235184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 96
               

               
Conread position:
               
338-603
               

               
Cow position:
               
chr6:21590570-21590850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
339-509
               

               
Cow position:
               
chr6:358010-357840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 108
               

               
Conread position:
               
339-558
               

               
Cow position:
               
chr6:55209434-55209655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 114
               

               
Conread position:
               
339-603
               

               
Cow position:
               
chr6:32287518-32287778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
192, 109
               

               
Conread position:
               
343-502
               

               
Cow position:
               
chr6:29266087-29266243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 13
               

               
Conread position:
               
343-558
               

               
Cow position:
               
chr6:50467017-50467233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 99
               

               
Conread position:
               
343-564
               

               
Cow position:
               
chr6:16261668-16261882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
343-565
               

               
Cow position:
               
chr6:53673745-53673969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
343-573
               

               
Cow position:
               
chr6:20206158-20206388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
48, 108
               

               
Conread position:
               
343-582
               

               
Cow position:
               
chr6:36189579-36189819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 108
               

               
Conread position:
               
343-597
               

               
Cow position:
               
chr6:23402107-23401856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
343-603
               

               
Cow position:
               
chr6:54573125-54573402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
344-597
               

               
Cow position:
               
chr6:12845262-12845512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
18, 133
               

               
Conread position:
               
344-601
               

               
Cow position:
               
chr6:10225756-10225515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
17, 104
               

               
Conread position:
               
345-537
               

               
Cow position:
               
chr6:44127490-44127688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 103
               

               
Conread position:
               
345-557
               

               
Cow position:
               
chr6:377015-377222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
345-601
               

               
Cow position:
               
chr6:21514735-21514468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 112
               

               
Conread position:
               
345-602
               

               
Cow position:
               
chr6:58597620-58597364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
347-534
               

               
Cow position:
               
chr6:5413705-5413892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 107
               

               
Conread position:
               
348-467
               

               
Cow position:
               
chr6:56849030-56848909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
12, 104
               

               
Conread position:
               
356-477
               

               
Cow position:
               
chr6:61644939-61644813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
356-587
               

               
Cow position:
               
chr6:26043649-26043865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
356-603
               

               
Cow position:
               
chr6:7119713-7119476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
170, 49
               

               
Conread position:
               
357-601
               

               
Cow position:
               
chr6:17794858-17794623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
358-571
               

               
Cow position:
               
chr6:58608548-58608333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 98
               

               
Conread position:
               
359-563
               

               
Cow position:
               
chr6:3592301-3592501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
359-565
               

               
Cow position:
               
chr6:27240106-27239901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
98, 89
               

               
Conread position:
               
359-601
               

               
Cow position:
               
chr6:20196393-20196162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
360-563
               

               
Cow position:
               
chr6:16266620-16266828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
32, 91
               

               
Conread position:
               
360-602
               

               
Cow position:
               
chr6:59718697-59718938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
166, 88
               

               
Conread position:
               
361-565
               

               
Cow position:
               
chr6:54208237-54208030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
362-571
               

               
Cow position:
               
chr6:13564987-13565197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
127, 83
               

               
Conread position:
               
363-601
               

               
Cow position:
               
chr6:19292702-19292942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
363-602
               

               
Cow position:
               
chr6:66375426-66375191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
168, 85
               

               
Conread position:
               
365-558
               

               
Cow position:
               
chr6:62929402-62929593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
365-602
               

               
Cow position:
               
chr6:17549075-17548833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
93, 83
               

               
Conread position:
               
370-582
               

               
Cow position:
               
chr6:60673480-60673687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
119, 36
               

               
Conread position:
               
371-537
               

               
Cow position:
               
chr6:6673014-6673175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
371-597
               

               
Cow position:
               
chr6:10487499-10487722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
160, 74
               

               
Conread position:
               
373-601
               

               
Cow position:
               
chr6:37462936-37463163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 52
               

               
Conread position:
               
373-603
               

               
Cow position:
               
chr6:51968981-51969219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
101, 75
               

               
Conread position:
               
377-529
               

               
Cow position:
               
chr6:54365085-54364932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 71
               

               
Conread position:
               
377-603
               

               
Cow position:
               
chr6:67281812-67282037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
380-603
               

               
Cow position:
               
chr6:2623703-2623916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
381-566
               

               
Cow position:
               
chr6:33509712-33509893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
179, 67
               

               
Conread position:
               
381-603
               

               
Cow position:
               
chr6:16288130-16287918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
75, 67
               

               
Conread position:
               
382-597
               

               
Cow position:
               
chr6:33929626-33929410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
76, 8
               

               
Conread position:
               
383-572
               

               
Cow position:
               
chr6:37395483-37395289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
388-566
               

               
Cow position:
               
chr6:23353482-23353657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
132, 57
               

               
Conread position:
               
388-603
               

               
Cow position:
               
chr6:36284171-36284383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
135, 58
               

               
Conread position:
               
390-601
               

               
Cow position:
               
chr6:18118121-18117909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
102, 58
               

               
Conread position:
               
390-601
               

               
Cow position:
               
chr6:61142633-61142421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
122, 55
               

               
Conread position:
               
392-550
               

               
Cow position:
               
chr6:26765081-26764928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
395-578
               

               
Cow position:
               
chr6:60468173-60468356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
136, 53
               

               
Conread position:
               
409-600
               

               
Cow position:
               
chr6:68652403-68652211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 39
               
Show alignments to all cow chromosomes.