Cow genome map
| Conread name: | Mixc-0040,h12 |
| Conread position: | 1-107 |
| Cow position: | chrX:28878058-28878165 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-108 |
| Cow position: | chrX:19018715-19018823 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-108 |
| Cow position: | chrX:37665807-37665699 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-111 |
| Cow position: | chrX:1122431-1122538 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 60 |
| Conread position: | 1-111 |
| Cow position: | chrX:24170615-24170724 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 1-111 |
| Cow position: | chrX:27261308-27261196 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-111 |
| Cow position: | chrX:27393910-27394021 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-111 |
| Cow position: | chrX:39220195-39220084 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-112 |
| Cow position: | chrX:3806798-3806686 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-112 |
| Cow position: | chrX:29733476-29733588 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-113 |
| Cow position: | chrX:15820710-15820598 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-113 |
| Cow position: | chrX:31294456-31294569 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-117 |
| Cow position: | chrX:7278027-7277910 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-117 |
| Cow position: | chrX:20881829-20881940 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-117 |
| Cow position: | chrX:34222830-34222715 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 1-117 |
| Cow position: | chrX:38218832-38218713 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1-117 |
| Cow position: | chrX:40680730-40680612 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-117 |
| Cow position: | chrX:42247066-42247184 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-117 |
| Cow position: | chrX:42492407-42492524 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-118 |
| Cow position: | chrX:22914926-22915042 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 1-118 |
| Cow position: | chrX:25412023-25411905 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-118 |
| Cow position: | chrX:29478839-29478722 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-119 |
| Cow position: | chrX:20743720-20743601 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-119 |
| Cow position: | chrX:42894042-42893921 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-120 |
| Cow position: | chrX:42855574-42855454 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 2-148 |
| Cow position: | chrX:23785761-23785616 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 3-110 |
| Cow position: | chrX:35285287-35285179 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-111 |
| Cow position: | chrX:42449900-42450009 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-113 |
| Cow position: | chrX:17524270-17524381 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-113 |
| Cow position: | chrX:39180120-39180230 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 3-119 |
| Cow position: | chrX:6407657-6407543 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 3-119 |
| Cow position: | chrX:9365562-9365679 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-121 |
| Cow position: | chrX:11633796-11633677 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-121 |
| Cow position: | chrX:19943122-19943239 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-124 |
| Cow position: | chrX:161526-161403 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-130 |
| Cow position: | chrX:17956804-17956679 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 9-117 |
| Cow position: | chrX:29289686-29289577 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 10-131 |
| Cow position: | chrX:4645806-4645928 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 28-118 |
| Cow position: | chrX:1572050-1572141 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 78 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
Show alignments to all cow chromosomes.