Cow genome map
| Conread name: | Mixg-0007b10 |
| Conread position: | 299-586 |
| Cow position: | chr1:89252549-89252262 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 312-611 |
| Cow position: | chr1:23634807-23634508 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 111, 24 |
| Conread position: | 327-611 |
| Cow position: | chr1:96193770-96193496 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 119, 78 |
| Conread position: | 328-497 |
| Cow position: | chr1:95765991-95765819 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 338-465 |
| Cow position: | chr1:22481260-22481133 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 338-477 |
| Cow position: | chr1:22789803-22789941 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 338-550 |
| Cow position: | chr1:42056991-42057201 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 338-604 |
| Cow position: | chr1:6765705-6765454 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 338-604 |
| Cow position: | chr1:100536546-100536805 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 338-610 |
| Cow position: | chr1:30033664-30033943 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 145, 121 |
| Conread position: | 338-611 |
| Cow position: | chr1:2764514-2764784 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 89, 134 |
| Conread position: | 338-611 |
| Cow position: | chr1:21576940-21577206 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 338-611 |
| Cow position: | chr1:24202748-24202495 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 338-611 |
| Cow position: | chr1:24562357-24562098 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 338-611 |
| Cow position: | chr1:35785173-35785434 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 338-611 |
| Cow position: | chr1:39480093-39479826 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 338-611 |
| Cow position: | chr1:40509860-40509591 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 338-611 |
| Cow position: | chr1:57120440-57120180 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 338-611 |
| Cow position: | chr1:82369815-82370073 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 338-611 |
| Cow position: | chr1:95018670-95018403 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 52, 115 |
| Conread position: | 342-611 |
| Cow position: | chr1:33987421-33987152 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 172 |
| Conread position: | 342-611 |
| Cow position: | chr1:86511300-86511557 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 358-611 |
| Cow position: | chr1:31190944-31190704 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 365-468 |
| Cow position: | chr1:12468368-12468265 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 365-474 |
| Cow position: | chr1:90391454-90391346 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 365-555 |
| Cow position: | chr1:31814439-31814629 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 131, 102 |
| Conread position: | 365-575 |
| Cow position: | chr1:37323859-37323663 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 365-580 |
| Cow position: | chr1:31498519-31498720 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 365-588 |
| Cow position: | chr1:22727726-22727953 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 365-588 |
| Cow position: | chr1:67913501-67913710 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 82 |
| Conread position: | 365-610 |
| Cow position: | chr1:60279948-60280183 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 365-611 |
| Cow position: | chr1:11199206-11198961 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 143, 102 |
| Conread position: | 365-611 |
| Cow position: | chr1:20798245-20798476 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 365-611 |
| Cow position: | chr1:38545295-38545061 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 365-611 |
| Cow position: | chr1:41515649-41515413 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 365-611 |
| Cow position: | chr1:42875237-42875010 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 365-611 |
| Cow position: | chr1:58384663-58384904 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 365-611 |
| Cow position: | chr1:58439874-58439642 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 157, 65 |
| Conread position: | 365-611 |
| Cow position: | chr1:67189004-67188770 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 365-611 |
| Cow position: | chr1:76208599-76208368 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 366-611 |
| Cow position: | chr1:85142789-85142560 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 161, 103 |
| Conread position: | 366-612 |
| Cow position: | chr1:73554663-73554899 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 150, 89 |
| Conread position: | 368-611 |
| Cow position: | chr1:88563489-88563263 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 193, 58 |
| Conread position: | 371-543 |
| Cow position: | chr1:55145476-55145648 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 371-585 |
| Cow position: | chr1:55203480-55203279 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 371-610 |
| Cow position: | chr1:76700315-76700087 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 371-611 |
| Cow position: | chr1:24571715-24571484 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 371-611 |
| Cow position: | chr1:33537522-33537747 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 371-611 |
| Cow position: | chr1:51444675-51444912 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 371-611 |
| Cow position: | chr1:53424351-53424588 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 371-611 |
| Cow position: | chr1:54477216-54477456 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 89, 59 |
| Conread position: | 371-611 |
| Cow position: | chr1:59626076-59626312 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 86, 111 |
| Conread position: | 371-611 |
| Cow position: | chr1:69201209-69200984 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 371-611 |
| Cow position: | chr1:80974798-80974575 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 372-611 |
| Cow position: | chr1:20078734-20078508 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 372-611 |
| Cow position: | chr1:41736443-41736214 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 372-611 |
| Cow position: | chr1:70535032-70534794 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 373-600 |
| Cow position: | chr1:14529036-14528823 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 373-611 |
| Cow position: | chr1:7746363-7746596 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 131, 77 |
| Conread position: | 373-611 |
| Cow position: | chr1:31238756-31238529 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 373-611 |
| Cow position: | chr1:57636044-57636267 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 373-611 |
| Cow position: | chr1:57946363-57946587 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 376-611 |
| Cow position: | chr1:20146848-20147078 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 87, 94 |
| Conread position: | 376-611 |
| Cow position: | chr1:56425346-56425567 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 376-611 |
| Cow position: | chr1:68252765-68252984 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 376-611 |
| Cow position: | chr1:90605421-90605186 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-611 |
| Cow position: | chr1:15368201-15367972 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 150, 104 |
| Conread position: | 377-611 |
| Cow position: | chr1:77103932-77103709 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 377-611 |
| Cow position: | chr1:98619863-98620100 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 80, 62 |
| Conread position: | 382-611 |
| Cow position: | chr1:14650529-14650305 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 88 |
| Conread position: | 392-610 |
| Cow position: | chr1:91052454-91052247 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 216, 74 |
| Conread position: | 410-611 |
| Cow position: | chr1:17236600-17236406 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 415-599 |
| Cow position: | chr1:22629416-22629242 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 419-611 |
| Cow position: | chr1:67974719-67974523 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 73 |
Show alignments to all cow chromosomes.