Cow genome map
| Conread name: | Mixg-0007b10 |
| Conread position: | 73-370 |
| Cow position: | chr3:1298967-1299272 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 257 |
| Conread position: | 281-610 |
| Cow position: | chr3:45311999-45312330 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 328-479 |
| Cow position: | chr3:39327811-39327962 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 328-569 |
| Cow position: | chr3:46225144-46225371 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 125 |
| Conread position: | 328-611 |
| Cow position: | chr3:26993390-26993654 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 336-467 |
| Cow position: | chr3:31748950-31749081 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 337-607 |
| Cow position: | chr3:39970794-39970531 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 139, 132 |
| Conread position: | 338-465 |
| Cow position: | chr3:27866938-27867064 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 338-467 |
| Cow position: | chr3:27454661-27454532 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 338-474 |
| Cow position: | chr3:23944240-23944375 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 338-478 |
| Cow position: | chr3:19794816-19794673 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 338-543 |
| Cow position: | chr3:71245871-71246068 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 338-610 |
| Cow position: | chr3:22352889-22353141 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 338-610 |
| Cow position: | chr3:25753529-25753794 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 338-611 |
| Cow position: | chr3:1299354-1299620 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 338-611 |
| Cow position: | chr3:14633966-14633703 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 338-611 |
| Cow position: | chr3:23497482-23497230 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 338-611 |
| Cow position: | chr3:49387924-49388182 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 338-611 |
| Cow position: | chr3:52257249-52256984 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 338-611 |
| Cow position: | chr3:57835376-57835107 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 143 |
| Conread position: | 338-612 |
| Cow position: | chr3:16332696-16332951 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 339-467 |
| Cow position: | chr3:523486-523614 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 341-584 |
| Cow position: | chr3:38497072-38497305 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 87, 60 |
| Conread position: | 341-611 |
| Cow position: | chr3:31934059-31933806 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 364-611 |
| Cow position: | chr3:16005500-16005266 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 364-611 |
| Cow position: | chr3:18353067-18352829 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 152, 95 |
| Conread position: | 365-467 |
| Cow position: | chr3:7772732-7772630 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 365-499 |
| Cow position: | chr3:19717966-19717830 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 365-543 |
| Cow position: | chr3:46349527-46349698 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 144, 90 |
| Conread position: | 365-548 |
| Cow position: | chr3:76923992-76923818 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 365-590 |
| Cow position: | chr3:56577647-56577423 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 77 |
| Conread position: | 365-603 |
| Cow position: | chr3:64278036-64278261 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 365-608 |
| Cow position: | chr3:36403415-36403652 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 10, 5 |
| Conread position: | 365-610 |
| Cow position: | chr3:4017804-4018044 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 9, 5 |
| Conread position: | 365-611 |
| Cow position: | chr3:4031045-4031280 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 365-611 |
| Cow position: | chr3:13352835-13352590 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 111, 83 |
| Conread position: | 365-611 |
| Cow position: | chr3:15379906-15379678 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 365-611 |
| Cow position: | chr3:18460392-18460155 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 196, 55 |
| Conread position: | 365-611 |
| Cow position: | chr3:48273081-48273317 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 365-611 |
| Cow position: | chr3:50204867-50205107 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 365-611 |
| Cow position: | chr3:55374378-55374612 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 365-611 |
| Cow position: | chr3:70913965-70913730 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 47 |
| Conread position: | 366-478 |
| Cow position: | chr3:21303281-21303169 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-611 |
| Cow position: | chr3:40070046-40069809 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 370-611 |
| Cow position: | chr3:30938806-30939034 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 10, 5 |
| Conread position: | 370-611 |
| Cow position: | chr3:47737774-47737537 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 371-479 |
| Cow position: | chr3:33326698-33326805 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 371-548 |
| Cow position: | chr3:76187847-76188013 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 371-555 |
| Cow position: | chr3:50347116-50347299 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 371-604 |
| Cow position: | chr3:56099705-56099483 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 371-610 |
| Cow position: | chr3:7677798-7678030 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 371-610 |
| Cow position: | chr3:72006762-72006532 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 156, 22 |
| Conread position: | 371-611 |
| Cow position: | chr3:2117754-2117985 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 371-611 |
| Cow position: | chr3:11944376-11944602 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 142, 80 |
| Conread position: | 371-611 |
| Cow position: | chr3:19108867-19109095 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 371-611 |
| Cow position: | chr3:43658580-43658350 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 185, 88 |
| Conread position: | 371-611 |
| Cow position: | chr3:45608152-45608381 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 127, 63 |
| Conread position: | 371-611 |
| Cow position: | chr3:67466573-67466343 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 373-612 |
| Cow position: | chr3:37486739-37486489 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 375-611 |
| Cow position: | chr3:601017-601255 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 88, 115 |
| Conread position: | 376-608 |
| Cow position: | chr3:35619866-35620091 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 216, 91 |
| Conread position: | 376-610 |
| Cow position: | chr3:21111739-21111968 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 151, 50 |
| Conread position: | 376-611 |
| Cow position: | chr3:31224589-31224818 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 376-611 |
| Cow position: | chr3:35884807-35884589 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 376-611 |
| Cow position: | chr3:41315414-41315646 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 89, 142 |
| Conread position: | 378-588 |
| Cow position: | chr3:11446749-11446952 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 382-611 |
| Cow position: | chr3:28675134-28675351 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 132, 77 |
| Conread position: | 383-611 |
| Cow position: | chr3:74403240-74403457 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 408-611 |
| Cow position: | chr3:51032504-51032710 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 410-611 |
| Cow position: | chr3:65877365-65877554 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.