Cow genome map
| Conread name: | Mixg-0007b10 |
| Conread position: | 338-467 |
| Cow position: | chr5:27063058-27062929 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 338-497 |
| Cow position: | chr5:25920606-25920446 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 338-552 |
| Cow position: | chr5:39749261-39749048 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 139, 131 |
| Conread position: | 338-609 |
| Cow position: | chr5:53834833-53835104 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 192, 121 |
| Conread position: | 338-610 |
| Cow position: | chr5:48574646-48574362 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 338-611 |
| Cow position: | chr5:6180723-6180997 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 119, 26 |
| Conread position: | 338-611 |
| Cow position: | chr5:6840007-6839742 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 65 |
| Conread position: | 338-611 |
| Cow position: | chr5:10262095-10261830 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 338-611 |
| Cow position: | chr5:17027249-17027503 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 338-611 |
| Cow position: | chr5:31503326-31503589 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 338-611 |
| Cow position: | chr5:45941817-45941558 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 338-611 |
| Cow position: | chr5:46671786-46672045 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 15 |
| Conread position: | 341-456 |
| Cow position: | chr5:8529830-8529944 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 341-611 |
| Cow position: | chr5:62159741-62159484 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 343-610 |
| Cow position: | chr5:32937641-32937892 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 116, 77 |
| Conread position: | 364-611 |
| Cow position: | chr5:32141334-32141098 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 365-501 |
| Cow position: | chr5:54454703-54454839 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 365-595 |
| Cow position: | chr5:41557592-41557374 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 365-610 |
| Cow position: | chr5:49429125-49428882 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 147, 102 |
| Conread position: | 365-610 |
| Cow position: | chr5:69519808-69520045 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 365-611 |
| Cow position: | chr5:15454972-15455220 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 85, 115 |
| Conread position: | 365-611 |
| Cow position: | chr5:23666987-23666731 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 113, 58 |
| Conread position: | 365-611 |
| Cow position: | chr5:34637647-34637881 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 365-611 |
| Cow position: | chr5:36406364-36406584 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 365-611 |
| Cow position: | chr5:55088062-55088305 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 153, 94 |
| Conread position: | 365-611 |
| Cow position: | chr5:59268618-59268857 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 366-584 |
| Cow position: | chr5:1767121-1766904 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 366-611 |
| Cow position: | chr5:46295476-46295246 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 367-610 |
| Cow position: | chr5:63312314-63312081 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 237, 102 |
| Conread position: | 367-612 |
| Cow position: | chr5:32815082-32815309 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 371-465 |
| Cow position: | chr5:51502098-51502192 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 371-479 |
| Cow position: | chr5:35446416-35446306 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 371-569 |
| Cow position: | chr5:15723101-15722918 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 371-611 |
| Cow position: | chr5:397146-396921 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 371-611 |
| Cow position: | chr5:48405808-48405574 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 96 |
| Conread position: | 371-612 |
| Cow position: | chr5:7808679-7808444 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 371-612 |
| Cow position: | chr5:54397313-54397085 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 372-590 |
| Cow position: | chr5:40897137-40896933 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 372-596 |
| Cow position: | chr5:30050727-30050517 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 372-611 |
| Cow position: | chr5:5682294-5682067 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 372-611 |
| Cow position: | chr5:58012588-58012352 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 87, 144 |
| Conread position: | 373-611 |
| Cow position: | chr5:7140884-7140661 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 374-611 |
| Cow position: | chr5:49132410-49132647 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 113, 27 |
| Conread position: | 375-611 |
| Cow position: | chr5:52605406-52605167 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 376-576 |
| Cow position: | chr5:75755792-75755982 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 376-588 |
| Cow position: | chr5:46339179-46339389 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 376-610 |
| Cow position: | chr5:46707856-46708092 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 130, 93 |
| Conread position: | 376-611 |
| Cow position: | chr5:6032193-6032423 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 376-611 |
| Cow position: | chr5:12872665-12872891 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 376-611 |
| Cow position: | chr5:38268749-38268983 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 382-611 |
| Cow position: | chr5:7277095-7277323 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 418-611 |
| Cow position: | chr5:38831478-38831656 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 420-611 |
| Cow position: | chr5:3823478-3823671 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
Show alignments to all cow chromosomes.