Cow genome map
| Conread name: | Mixg-0007b10 |
| Conread position: | 288-465 |
| Cow position: | chr9:37168661-37168842 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 313-586 |
| Cow position: | chr9:29338131-29338386 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 328-611 |
| Cow position: | chr9:20988534-20988799 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 328-611 |
| Cow position: | chr9:31114892-31115161 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 98, 141 |
| Conread position: | 338-497 |
| Cow position: | chr9:34945765-34945606 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 152, 121 |
| Conread position: | 338-540 |
| Cow position: | chr9:46524970-46524766 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 147, 114 |
| Conread position: | 338-588 |
| Cow position: | chr9:25547905-25547657 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 338-604 |
| Cow position: | chr9:44624119-44623844 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 81, 65 |
| Conread position: | 338-610 |
| Cow position: | chr9:30020951-30021202 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 338-611 |
| Cow position: | chr9:3932864-3932605 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 338-611 |
| Cow position: | chr9:20959044-20959301 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 338-611 |
| Cow position: | chr9:27050397-27050651 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 338-611 |
| Cow position: | chr9:54997122-54997401 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 338-611 |
| Cow position: | chr9:61845754-61846022 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 338-611 |
| Cow position: | chr9:62401073-62400802 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 144, 97 |
| Conread position: | 341-598 |
| Cow position: | chr9:11410454-11410691 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 344-465 |
| Cow position: | chr9:33659365-33659244 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 353-465 |
| Cow position: | chr9:15949958-15950071 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 365-555 |
| Cow position: | chr9:55796830-55796645 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 365-600 |
| Cow position: | chr9:5525090-5524866 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 28, 96 |
| Conread position: | 365-609 |
| Cow position: | chr9:10643670-10643434 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 365-610 |
| Cow position: | chr9:18109975-18110206 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 365-611 |
| Cow position: | chr9:5533663-5533429 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 180, 39 |
| Conread position: | 365-611 |
| Cow position: | chr9:7830630-7830389 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 181, 92 |
| Conread position: | 365-611 |
| Cow position: | chr9:7844413-7844184 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 365-611 |
| Cow position: | chr9:9491680-9491444 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 365-611 |
| Cow position: | chr9:21461736-21461960 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 365-611 |
| Cow position: | chr9:30737240-30737004 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 365-611 |
| Cow position: | chr9:33068221-33067988 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 365-611 |
| Cow position: | chr9:44920538-44920771 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 365-611 |
| Cow position: | chr9:58133327-58133089 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 151, 94 |
| Conread position: | 371-606 |
| Cow position: | chr9:59760913-59761130 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 125, 84 |
| Conread position: | 371-611 |
| Cow position: | chr9:9649448-9649678 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 371-611 |
| Cow position: | chr9:9985483-9985247 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 371-611 |
| Cow position: | chr9:19279186-19278953 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 145, 96 |
| Conread position: | 371-611 |
| Cow position: | chr9:47836049-47836283 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 371-611 |
| Cow position: | chr9:52001828-52001597 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 372-611 |
| Cow position: | chr9:30139335-30139108 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 375-611 |
| Cow position: | chr9:1640541-1640774 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 375-611 |
| Cow position: | chr9:13794507-13794272 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 102, 65 |
| Conread position: | 376-591 |
| Cow position: | chr9:18007883-18008085 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 376-610 |
| Cow position: | chr9:28773983-28773760 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 174, 82 |
| Conread position: | 376-611 |
| Cow position: | chr9:1998014-1997774 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 376-611 |
| Cow position: | chr9:23421870-23422101 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 175, 82 |
| Conread position: | 376-611 |
| Cow position: | chr9:52408037-52407803 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 107, 218 |
| Conread position: | 378-611 |
| Cow position: | chr9:56746147-56746370 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 379-604 |
| Cow position: | chr9:9515954-9516163 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 382-612 |
| Cow position: | chr9:25469879-25469666 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 383-611 |
| Cow position: | chr9:61237473-61237237 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 117 |
| Conread position: | 408-610 |
| Cow position: | chr9:64049714-64049911 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 412-611 |
| Cow position: | chr9:41858460-41858273 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.