Cow genome map
| Conread name: | Mixg-0007b10 |
| Conread position: | 289-611 |
| Cow position: | chrX:21190965-21191284 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 19, 63 |
| Conread position: | 291-612 |
| Cow position: | chrX:39463938-39463626 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 328-610 |
| Cow position: | chrX:28156679-28156948 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 337-478 |
| Cow position: | chrX:10301288-10301426 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 132, 28 |
| Conread position: | 337-586 |
| Cow position: | chrX:2524577-2524334 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 338-465 |
| Cow position: | chrX:36839863-36839990 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 338-474 |
| Cow position: | chrX:22308420-22308285 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 338-497 |
| Cow position: | chrX:33803838-33803679 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 152, 147 |
| Conread position: | 338-537 |
| Cow position: | chrX:35287583-35287779 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 119, 39 |
| Conread position: | 338-563 |
| Cow position: | chrX:4407040-4407268 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 338-610 |
| Cow position: | chrX:11744424-11744681 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 338-611 |
| Cow position: | chrX:4482115-4482367 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 338-611 |
| Cow position: | chrX:40693572-40693307 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 338-611 |
| Cow position: | chrX:40788292-40788548 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 338-611 |
| Cow position: | chrX:41734034-41733777 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 40, 120 |
| Conread position: | 338-611 |
| Cow position: | chrX:41791558-41791298 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 341-611 |
| Cow position: | chrX:12289881-12290152 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 341-612 |
| Cow position: | chrX:29876898-29876642 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 211, 29 |
| Conread position: | 342-611 |
| Cow position: | chrX:23415534-23415281 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 225, 126 |
| Conread position: | 343-474 |
| Cow position: | chrX:150633-150764 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 344-611 |
| Cow position: | chrX:10412812-10412559 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 355-611 |
| Cow position: | chrX:38793527-38793763 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 364-611 |
| Cow position: | chrX:6543445-6543679 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 365-479 |
| Cow position: | chrX:30089862-30089745 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 365-543 |
| Cow position: | chrX:1527784-1527608 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 365-609 |
| Cow position: | chrX:35388735-35388495 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 104 |
| Conread position: | 365-611 |
| Cow position: | chrX:10528602-10528360 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 365-611 |
| Cow position: | chrX:13912277-13912510 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 365-611 |
| Cow position: | chrX:16517948-16517718 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 365-611 |
| Cow position: | chrX:27754612-27754843 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 365-611 |
| Cow position: | chrX:37852320-37852553 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 365-611 |
| Cow position: | chrX:38935606-38935840 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 365-611 |
| Cow position: | chrX:40365561-40365329 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 365-611 |
| Cow position: | chrX:41527330-41527094 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 366-540 |
| Cow position: | chrX:38218162-38218327 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 366-556 |
| Cow position: | chrX:620079-619900 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 366-610 |
| Cow position: | chrX:19929620-19929848 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 179, 103 |
| Conread position: | 366-611 |
| Cow position: | chrX:28133282-28133528 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 116, 52 |
| Conread position: | 371-513 |
| Cow position: | chrX:13414616-13414477 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 371-587 |
| Cow position: | chrX:33630676-33630885 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 92, 69 |
| Conread position: | 371-609 |
| Cow position: | chrX:8516788-8517016 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 154, 75 |
| Conread position: | 371-609 |
| Cow position: | chrX:25405182-25404954 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 97 |
| Conread position: | 371-609 |
| Cow position: | chrX:28666769-28666540 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 371-611 |
| Cow position: | chrX:2382658-2382881 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 160, 81 |
| Conread position: | 371-611 |
| Cow position: | chrX:9299675-9299435 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 59 |
| Conread position: | 371-611 |
| Cow position: | chrX:20503830-20504060 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 371-611 |
| Cow position: | chrX:33822281-33822513 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 371-611 |
| Cow position: | chrX:34866655-34866418 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 115, 38 |
| Conread position: | 371-611 |
| Cow position: | chrX:38007795-38007568 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 372-586 |
| Cow position: | chrX:9535956-9536148 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 373-543 |
| Cow position: | chrX:29927849-29927675 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 91, 57 |
| Conread position: | 373-611 |
| Cow position: | chrX:40496396-40496164 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 375-467 |
| Cow position: | chrX:16021182-16021090 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-611 |
| Cow position: | chrX:30354580-30354806 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 382-611 |
| Cow position: | chrX:5841495-5841711 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 421-610 |
| Cow position: | chrX:45042786-45042968 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 138, 46 |
Show alignments to all cow chromosomes.