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Cow genome map

           
Conread name:
           
Mixn-0006h23
        

               
Conread position:
               
1-127
               

               
Cow position:
               
chr25:4488485-4488610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr25:18935122-18934957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr25:36119954-36120118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
85, 78
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr25:21266759-21266939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr25:33839141-33839309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
132, 81
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr25:10010968-10010788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr25:17712287-17712472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
132, 105
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr25:25948642-25948463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
105, 69
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr25:41364226-41364050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
137, 82
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr25:36026760-36026970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr25:20085040-20085249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr25:9961425-9961195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 219
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr25:12817126-12817353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr25:31732983-31732756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
84, 222
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr25:395108-395343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
77, 50
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr25:16001768-16001514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
16, 92
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr25:5792053-5791782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
100, 15
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr25:7800889-7801169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 161
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr25:15319674-15319949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
108, 15
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr25:20211333-20211030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
81, 143
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr25:20020234-20019936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
132, 96
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr25:27821164-27821485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr25:11131338-11131663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr25:10156344-10156665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 87
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr25:36037027-36036683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr25:20460875-20461207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
15, 181
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr25:25051631-25051265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr25:32191424-32191770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr25:27531514-27531154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
182, 101
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr25:11662066-11661696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr25:14196608-14196987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 332
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr25:21191240-21191610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 155
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr25:15273443-15273796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 24
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr25:23917595-23917965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr25:7581674-7581297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr25:12117233-12116868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr25:31230470-31230118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
181, 38
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr25:26238624-26239001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 186
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr25:21245853-21245451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr25:4547967-4547550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
87, 407
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr25:15714634-15715039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
87, 140
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr25:3992543-3992960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 179
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr25:12097595-12098017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
103, 141
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr25:16319379-16318966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 153
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr25:35612548-35612116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr25:36081627-36082051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
89, 9
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr25:6683308-6682856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 165
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr25:2110836-2111231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
105, 68
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr25:23053309-23053761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 308
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr25:24669677-24669253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 15
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr25:26087268-26087716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
87, 336
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr25:26700793-26701219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr25:18294561-18294109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr25:1837993-1838444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr25:10407665-10407210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
86, 360
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr25:20060278-20059846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr25:22314954-22315407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 163
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr25:21193190-21192733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr25:33550259-33550718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr25:36746692-36746238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 15
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr25:9990337-9989888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 83
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr25:5847053-5846594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr25:11585271-11585741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 139
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr25:30279455-30278986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 122
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr25:30319696-30319232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 253
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr25:35347658-35348117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 9
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr25:19129606-19130069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr25:6464276-6463812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 70
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr25:11437049-11436613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 109
               

               
Conread position:
               
2-215
               

               
Cow position:
               
chr25:20394957-20395168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
180, 23
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr25:11054678-11054916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
179, 14
               

               
Conread position:
               
2-348
               

               
Cow position:
               
chr25:21895133-21894768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-454
               

               
Cow position:
               
chr25:20069474-20069932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
86, 290
               

               
Conread position:
               
2-459
               

               
Cow position:
               
chr25:6470466-6469983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
86, 123
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr25:35607968-35607787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr25:2136107-2136456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
101, 13
               

               
Conread position:
               
3-418
               

               
Cow position:
               
chr25:448412-447979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 326
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr25:23324608-23324424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr25:12204226-12204432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr25:15694739-15694987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
7, 75
               

               
Conread position:
               
4-262
               

               
Cow position:
               
chr25:448589-448328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr25:18487430-18487703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
126, 28
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr25:6226797-6227128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
92, 118
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr25:17975611-17975285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 175
               

               
Conread position:
               
4-334
               

               
Cow position:
               
chr25:18293513-18293848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
145, 12
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr25:20076250-20076609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr25:36761862-36762227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 350
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr25:22531043-22531404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 68
               

               
Conread position:
               
4-420
               

               
Cow position:
               
chr25:9269129-9269524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
176, 11
               

               
Conread position:
               
4-434
               

               
Cow position:
               
chr25:18721348-18720928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
108, 12
               

               
Conread position:
               
4-448
               

               
Cow position:
               
chr25:14833897-14833458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
190, 16
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chr25:12195568-12195392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
97, 70
               

               
Conread position:
               
5-276
               

               
Cow position:
               
chr25:25754239-25753958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
5-343
               

               
Cow position:
               
chr25:21209191-21208859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
83, 154
               

               
Conread position:
               
5-434
               

               
Cow position:
               
chr25:7216585-7217015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 165
               

               
Conread position:
               
6-277
               

               
Cow position:
               
chr25:5837208-5836918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
82, 150
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr25:8560627-8560919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
148, 40
               

               
Conread position:
               
6-302
               

               
Cow position:
               
chr25:24008419-24008126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
103, 184
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chr25:8576451-8576819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
95, 150
               

               
Conread position:
               
6-420
               

               
Cow position:
               
chr25:17566345-17566775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
124, 335
               

               
Conread position:
               
6-424
               

               
Cow position:
               
chr25:23829359-23828941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr25:38972592-38972842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
7-321
               

               
Cow position:
               
chr25:15377092-15377416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 70
               

               
Conread position:
               
7-355
               

               
Cow position:
               
chr25:15254572-15254226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 142
               

               
Conread position:
               
7-406
               

               
Cow position:
               
chr25:788028-788427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
99, 41
               

               
Conread position:
               
7-436
               

               
Cow position:
               
chr25:14791511-14791955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 350
               

               
Conread position:
               
8-447
               

               
Cow position:
               
chr25:7641693-7641247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
9-181
               

               
Cow position:
               
chr25:7329305-7329482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
77, 166
               

               
Conread position:
               
9-181
               

               
Cow position:
               
chr25:10746661-10746833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
97, 139
               

               
Conread position:
               
10-277
               

               
Cow position:
               
chr25:38425127-38425400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
172, 103
               

               
Conread position:
               
10-337
               

               
Cow position:
               
chr25:12778770-12778435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 150
               

               
Conread position:
               
10-420
               

               
Cow position:
               
chr25:20023631-20023210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
78, 335
               

               
Conread position:
               
10-434
               

               
Cow position:
               
chr25:19478449-19478889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
18, 137
               

               
Conread position:
               
10-434
               

               
Cow position:
               
chr25:24572836-24573257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 69
               

               
Conread position:
               
11-266
               

               
Cow position:
               
chr25:36779258-36779529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
11-420
               

               
Cow position:
               
chr25:8120539-8120965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 188
               

               
Conread position:
               
11-460
               

               
Cow position:
               
chr25:13380853-13380378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 331
               

               
Conread position:
               
12-273
               

               
Cow position:
               
chr25:14266740-14266483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
88, 148
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chr25:9642118-9642406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
84, 124
               

               
Conread position:
               
12-354
               

               
Cow position:
               
chr25:12840954-12840597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
125, 72
               

               
Conread position:
               
12-363
               

               
Cow position:
               
chr25:38981875-38982223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
170, 23
               

               
Conread position:
               
13-139
               

               
Cow position:
               
chr25:10366924-10366800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
13-434
               

               
Cow position:
               
chr25:20007912-20008332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 62
               

               
Conread position:
               
13-448
               

               
Cow position:
               
chr25:26338210-26338671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 339
               

               
Conread position:
               
13-449
               

               
Cow position:
               
chr25:2414595-2415008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
152, 64
               

               
Conread position:
               
13-449
               

               
Cow position:
               
chr25:4522054-4521632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
169, 51
               

               
Conread position:
               
14-180
               

               
Cow position:
               
chr25:6256172-6256002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
14-297
               

               
Cow position:
               
chr25:12081542-12081256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
17-448
               

               
Cow position:
               
chr25:20785815-20785375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 105
               

               
Conread position:
               
18-256
               

               
Cow position:
               
chr25:36033206-36033456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
18-342
               

               
Cow position:
               
chr25:6961380-6961039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 45
               

               
Conread position:
               
20-356
               

               
Cow position:
               
chr25:34169726-34170071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 157
               

               
Conread position:
               
21-356
               

               
Cow position:
               
chr25:38957745-38958082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
67, 38
               

               
Conread position:
               
29-438
               

               
Cow position:
               
chr25:12899536-12899971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
32-237
               

               
Cow position:
               
chr25:11978915-11978708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
74, 43
               

               
Conread position:
               
32-416
               

               
Cow position:
               
chr25:2624588-2624974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 198
               

               
Conread position:
               
33-341
               

               
Cow position:
               
chr25:12319553-12319243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
34-286
               

               
Cow position:
               
chr25:9754298-9754048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
34-430
               

               
Cow position:
               
chr25:14720539-14720927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
38-335
               

               
Cow position:
               
chr25:26090025-26089709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
11, 206
               

               
Conread position:
               
45-437
               

               
Cow position:
               
chr25:26133834-26134247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 213
               

               
Conread position:
               
48-420
               

               
Cow position:
               
chr25:22178721-22179094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 302
               

               
Conread position:
               
49-237
               

               
Cow position:
               
chr25:12521160-12520965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
50-355
               

               
Cow position:
               
chr25:32277796-32277483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
51-429
               

               
Cow position:
               
chr25:17704552-17704932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 137
               

               
Conread position:
               
54-205
               

               
Cow position:
               
chr25:35110324-35110163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
54-434
               

               
Cow position:
               
chr25:32453592-32453232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
34, 133
               

               
Conread position:
               
55-348
               

               
Cow position:
               
chr25:20133508-20133200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
25, 199
               

               
Conread position:
               
55-420
               

               
Cow position:
               
chr25:12755684-12755307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
55-435
               

               
Cow position:
               
chr25:26137012-26136621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
56-419
               

               
Cow position:
               
chr25:17342257-17342644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
32, 206
               

               
Conread position:
               
57-454
               

               
Cow position:
               
chr25:7750259-7750664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
31, 128
               

               
Conread position:
               
59-362
               

               
Cow position:
               
chr25:18905692-18906014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
29, 300
               

               
Conread position:
               
61-348
               

               
Cow position:
               
chr25:4681046-4681343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
62-356
               

               
Cow position:
               
chr25:36017353-36017656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
63-446
               

               
Cow position:
               
chr25:18894908-18894502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 224
               

               
Conread position:
               
65-420
               

               
Cow position:
               
chr25:13443586-13443223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
118, 21
               

               
Conread position:
               
67-434
               

               
Cow position:
               
chr25:26523783-26524163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
5, 127
               

               
Conread position:
               
72-415
               

               
Cow position:
               
chr25:23245185-23244825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
34, 110
               

               
Conread position:
               
79-420
               

               
Cow position:
               
chr25:21893168-21893518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 43
               

               
Conread position:
               
82-448
               

               
Cow position:
               
chr25:26679062-26679439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 271
               

               
Conread position:
               
84-438
               

               
Cow position:
               
chr25:41151124-41150760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
86-448
               

               
Cow position:
               
chr25:20523389-20523027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
114, 18
               

               
Conread position:
               
98-344
               

               
Cow position:
               
chr25:14157475-14157738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
100-277
               

               
Cow position:
               
chr25:24051817-24052005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
105-360
               

               
Cow position:
               
chr25:30618925-30619190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
105-437
               

               
Cow position:
               
chr25:33686820-33686479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
105-451
               

               
Cow position:
               
chr25:12609204-12609556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
103, 72
               

               
Conread position:
               
106-461
               

               
Cow position:
               
chr25:5920798-5921172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
26, 153
               

               
Conread position:
               
107-448
               

               
Cow position:
               
chr25:21668107-21668462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
75, 250
               

               
Conread position:
               
111-355
               

               
Cow position:
               
chr25:12510144-12509890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
111-450
               

               
Cow position:
               
chr25:4245555-4245881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
311, 67
               

               
Conread position:
               
115-276
               

               
Cow position:
               
chr25:7449677-7449838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
120-437
               

               
Cow position:
               
chr25:33457604-33457929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
61, 235
               

               
Conread position:
               
121-416
               

               
Cow position:
               
chr25:11051405-11051702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 26
               

               
Conread position:
               
121-448
               

               
Cow position:
               
chr25:9843052-9843393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 5
               

               
Conread position:
               
125-437
               

               
Cow position:
               
chr25:33557153-33557471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 156
               

               
Conread position:
               
126-420
               

               
Cow position:
               
chr25:19364181-19363876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 217
               

               
Conread position:
               
126-422
               

               
Cow position:
               
chr25:36872242-36872549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
127-423
               

               
Cow position:
               
chr25:11433072-11432765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
56, 231
               

               
Conread position:
               
133-437
               

               
Cow position:
               
chr25:22317568-22317885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
52, 197
               

               
Conread position:
               
135-327
               

               
Cow position:
               
chr25:14809177-14809369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
144, 34
               

               
Conread position:
               
136-416
               

               
Cow position:
               
chr25:1824205-1823911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 217
               

               
Conread position:
               
159-424
               

               
Cow position:
               
chr25:7799466-7799740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
160-434
               

               
Cow position:
               
chr25:12806958-12807243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
23, 88
               

               
Conread position:
               
160-457
               

               
Cow position:
               
chr25:13621445-13621143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 164
               

               
Conread position:
               
179-434
               

               
Cow position:
               
chr25:22348522-22348257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
181-362
               

               
Cow position:
               
chr25:22261360-22261186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
181-434
               

               
Cow position:
               
chr25:12195279-12195021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 8
               

               
Conread position:
               
187-455
               

               
Cow position:
               
chr25:36074047-36073778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
198-353
               

               
Cow position:
               
chr25:18810303-18810467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
198-420
               

               
Cow position:
               
chr25:26306244-26306019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
77, 119
               

               
Conread position:
               
198-424
               

               
Cow position:
               
chr25:26072596-26072375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 12
               

               
Conread position:
               
199-366
               

               
Cow position:
               
chr25:23505013-23505185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
82, 137
               

               
Conread position:
               
199-435
               

               
Cow position:
               
chr25:4157277-4157048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
199-447
               

               
Cow position:
               
chr25:7551398-7551159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
200-420
               

               
Cow position:
               
chr25:1840285-1840505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
18, 146
               

               
Conread position:
               
202-424
               

               
Cow position:
               
chr25:18288805-18288582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
203-416
               

               
Cow position:
               
chr25:13222865-13223078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 144
               

               
Conread position:
               
207-431
               

               
Cow position:
               
chr25:7673263-7673502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 147
               

               
Conread position:
               
218-420
               

               
Cow position:
               
chr25:36873353-36873153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 129
               

               
Conread position:
               
219-445
               

               
Cow position:
               
chr25:14225343-14225574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
225-434
               

               
Cow position:
               
chr25:9574143-9573936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 116
               

               
Conread position:
               
233-434
               

               
Cow position:
               
chr25:1802602-1802809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 127
               

               
Conread position:
               
241-434
               

               
Cow position:
               
chr25:11060135-11060335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 95
               

               
Conread position:
               
242-448
               

               
Cow position:
               
chr25:24115312-24115100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 103
               

               
Conread position:
               
246-434
               

               
Cow position:
               
chr25:15349897-15349710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
283-448
               

               
Cow position:
               
chr25:21082355-21082192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
139, 57
               

               
Conread position:
               
287-440
               

               
Cow position:
               
chr25:13470658-13470505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
135, 53
               
Show alignments to all cow chromosomes.