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Cow genome map

           
Conread name:
           
Mixn-0006h23
        

               
Conread position:
               
1-161
               

               
Cow position:
               
chr27:1884239-1884074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr27:23558184-23558361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
87, 166
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr27:29400018-29399837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr27:13411157-13411342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
130, 16
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr27:28018538-28018353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
81, 125
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr27:4824920-4825096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
159, 15
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr27:16620192-16620007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr27:22179596-22179790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
100, 104
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr27:1183675-1183885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr27:16871718-16871927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
104, 15
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr27:31216962-31217181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
87, 175
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr27:15858890-15859106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr27:29251081-29250842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr27:21408351-21408595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
87, 210
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr27:27141793-27141557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr27:1498515-1498260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
105, 64
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr27:28061561-28061821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 184
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr27:27843791-27844059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
87, 144
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr27:11273771-11273506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr27:6523247-6522971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
78, 223
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr27:20553918-20553647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr27:9090600-9090902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
87, 120
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr27:30362444-30362142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr27:23472459-23472141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
12, 177
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr27:4805705-4806037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr27:24014540-24014881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr27:1123223-1122880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr27:19647743-19648100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr27:24321389-24321032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr27:26440856-26441205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr27:12246861-12246487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 283
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr27:16478147-16478504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
111, 28
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr27:24445955-24446315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 159
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr27:20795985-20795624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
105, 68
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr27:30359596-30359238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
105, 45
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr27:4673222-4672842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 365
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr27:6074117-6073754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr27:27136324-27136699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
107, 23
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr27:23483424-23483044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 78
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr27:7934962-7935383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
87, 103
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr27:27388827-27389253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
108, 78
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr27:29799145-29798726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
105, 176
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr27:26239225-26238797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 39
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr27:26864918-26865337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 15
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr27:26999223-26999652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 75
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr27:30406830-30407276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr27:7412584-7412164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 177
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr27:8629673-8630103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr27:22603364-22602945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
137, 77
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr27:22171499-22171056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr27:30890488-30890058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 45
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr27:15925536-15925099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr27:15926973-15926553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
103, 132
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr27:19388220-19387775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 201
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr27:19685513-19685956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 87
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr27:11435132-11435574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 22
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr27:13638791-13639234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
107, 156
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr27:15454414-15453963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 113
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr27:15871363-15870912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 71
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr27:16787028-16786584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
96, 176
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr27:22035172-22035621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 358
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr27:27245151-27245611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr27:28164210-28164641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
105, 50
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chr27:1768434-1768866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
105, 45
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr27:6500266-6499805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
87, 248
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chr27:28206999-28206550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 356
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr27:20828506-20828965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr27:30868539-30869013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr27:17397248-17397707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 17
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr27:31372778-31373232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
140, 111
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr27:15668566-15669036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr27:22220755-22220291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 135
               

               
Conread position:
               
1-452
               

               
Cow position:
               
chr27:10307094-10307562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 379
               

               
Conread position:
               
1-452
               

               
Cow position:
               
chr27:21668924-21669373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chr27:19546303-19546786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr27:1353784-1353317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
107, 16
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr27:20354781-20354337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 74
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr27:26433611-26434077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
87, 28
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr27:27019899-27020359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
89, 253
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr27:30582939-30582475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
87, 110
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr27:12516400-12515929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
65, 324
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr27:20283832-20283373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
182, 15
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr27:27640791-27641300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
2-199
               

               
Cow position:
               
chr27:22771958-22771749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr27:27528161-27528416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
101, 177
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr27:4835407-4835759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
86, 157
               

               
Conread position:
               
2-415
               

               
Cow position:
               
chr27:14670182-14670605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chr27:23554119-23554559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
86, 309
               

               
Conread position:
               
2-447
               

               
Cow position:
               
chr27:15867591-15867136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 60
               

               
Conread position:
               
2-451
               

               
Cow position:
               
chr27:13875932-13875472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
2-453
               

               
Cow position:
               
chr27:28001618-28002065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
131, 46
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr27:26379977-26380152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
3-454
               

               
Cow position:
               
chr27:30915201-30914744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 93
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr27:18030861-18031044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
84, 22
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr27:25791002-25790746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr27:30354147-30354428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr27:26427930-26428217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
80, 265
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr27:8942485-8942761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
104, 222
               

               
Conread position:
               
4-342
               

               
Cow position:
               
chr27:25783800-25783469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr27:20641148-20641507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
102, 61
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr27:2957606-2957236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
64, 177
               

               
Conread position:
               
4-419
               

               
Cow position:
               
chr27:30765230-30764804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 94
               

               
Conread position:
               
4-420
               

               
Cow position:
               
chr27:2592739-2592307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
128, 12
               

               
Conread position:
               
4-431
               

               
Cow position:
               
chr27:27632411-27632834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 106
               

               
Conread position:
               
4-434
               

               
Cow position:
               
chr27:8062160-8062596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
100, 14
               

               
Conread position:
               
4-434
               

               
Cow position:
               
chr27:10980062-10979616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
84, 150
               

               
Conread position:
               
5-208
               

               
Cow position:
               
chr27:6037319-6037112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chr27:30843881-30844110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
107, 63
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr27:14902452-14902729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
83, 5
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chr27:815562-815268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 72
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr27:4812680-4813019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 11
               

               
Conread position:
               
5-341
               

               
Cow position:
               
chr27:25411322-25411665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
101, 83
               

               
Conread position:
               
5-411
               

               
Cow position:
               
chr27:20067781-20068196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 60
               

               
Conread position:
               
5-420
               

               
Cow position:
               
chr27:18544195-18543758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
97, 324
               

               
Conread position:
               
5-420
               

               
Cow position:
               
chr27:26424390-26424806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
5-435
               

               
Cow position:
               
chr27:29493720-29494143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 11
               

               
Conread position:
               
5-448
               

               
Cow position:
               
chr27:6550648-6550204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 96
               

               
Conread position:
               
6-365
               

               
Cow position:
               
chr27:25277332-25276964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
6-380
               

               
Cow position:
               
chr27:26959424-26959804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
6-437
               

               
Cow position:
               
chr27:26413059-26413525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
6-439
               

               
Cow position:
               
chr27:23452676-23452215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
7-276
               

               
Cow position:
               
chr27:732766-732491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
7-416
               

               
Cow position:
               
chr27:435431-435006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
7-436
               

               
Cow position:
               
chr27:18558559-18558114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 115
               

               
Conread position:
               
7-448
               

               
Cow position:
               
chr27:21977942-21978400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
93, 78
               

               
Conread position:
               
9-448
               

               
Cow position:
               
chr27:22547211-22547646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 206
               

               
Conread position:
               
10-419
               

               
Cow position:
               
chr27:18739580-18739145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
92, 254
               

               
Conread position:
               
10-430
               

               
Cow position:
               
chr27:31219432-31219032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
172, 69
               

               
Conread position:
               
10-448
               

               
Cow position:
               
chr27:16705439-16704993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
71, 64
               

               
Conread position:
               
11-205
               

               
Cow position:
               
chr27:27683925-27684128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
11-232
               

               
Cow position:
               
chr27:27554495-27554720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
122, 35
               

               
Conread position:
               
11-303
               

               
Cow position:
               
chr27:707139-706835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
109, 54
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr27:16284664-16284325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 173
               

               
Conread position:
               
11-343
               

               
Cow position:
               
chr27:21393312-21393664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
8, 97
               

               
Conread position:
               
11-355
               

               
Cow position:
               
chr27:4819519-4819881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
171, 92
               

               
Conread position:
               
11-434
               

               
Cow position:
               
chr27:23128646-23128216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
121, 54
               

               
Conread position:
               
11-485
               

               
Cow position:
               
chr27:28921705-28922185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 133
               

               
Conread position:
               
12-218
               

               
Cow position:
               
chr27:20126836-20127044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
12-234
               

               
Cow position:
               
chr27:20592174-20591945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 213
               

               
Conread position:
               
12-334
               

               
Cow position:
               
chr27:26151210-26150869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
12-356
               

               
Cow position:
               
chr27:20036938-20037286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
94, 71
               

               
Conread position:
               
13-236
               

               
Cow position:
               
chr27:6058692-6058460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 173
               

               
Conread position:
               
13-277
               

               
Cow position:
               
chr27:22426638-22426917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
15, 245
               

               
Conread position:
               
13-324
               

               
Cow position:
               
chr27:18593460-18593134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
13-357
               

               
Cow position:
               
chr27:22418575-22418937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
13-434
               

               
Cow position:
               
chr27:28190028-28190435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 151
               

               
Conread position:
               
14-420
               

               
Cow position:
               
chr27:20636892-20637288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
168, 42
               

               
Conread position:
               
14-467
               

               
Cow position:
               
chr27:26508969-26509431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
17-336
               

               
Cow position:
               
chr27:8353662-8353328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 145
               

               
Conread position:
               
17-366
               

               
Cow position:
               
chr27:20757870-20758210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
17-434
               

               
Cow position:
               
chr27:19718109-19717652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
20-250
               

               
Cow position:
               
chr27:27550565-27550792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
162, 86
               

               
Conread position:
               
23-277
               

               
Cow position:
               
chr27:4067-3812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 170
               

               
Conread position:
               
32-353
               

               
Cow position:
               
chr27:15408873-15409202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
74, 115
               

               
Conread position:
               
32-430
               

               
Cow position:
               
chr27:27613468-27613839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
390, 120
               

               
Conread position:
               
32-433
               

               
Cow position:
               
chr27:28496204-28496614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
55, 160
               

               
Conread position:
               
35-162
               

               
Cow position:
               
chr27:26322521-26322388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
35-356
               

               
Cow position:
               
chr27:15643343-15643006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 321
               

               
Conread position:
               
36-356
               

               
Cow position:
               
chr27:26426375-26426044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
52, 255
               

               
Conread position:
               
38-343
               

               
Cow position:
               
chr27:24477581-24477259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
39-448
               

               
Cow position:
               
chr27:4944365-4944763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
165, 62
               

               
Conread position:
               
41-344
               

               
Cow position:
               
chr27:29431622-29431311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
47, 123
               

               
Conread position:
               
43-457
               

               
Cow position:
               
chr27:16781024-16780592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
59, 69
               

               
Conread position:
               
45-343
               

               
Cow position:
               
chr27:20549556-20549869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
120, 32
               

               
Conread position:
               
48-264
               

               
Cow position:
               
chr27:154523-154291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
48-431
               

               
Cow position:
               
chr27:23891092-23890691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 43
               

               
Conread position:
               
48-448
               

               
Cow position:
               
chr27:11480475-11480895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
59, 290
               

               
Conread position:
               
52-448
               

               
Cow position:
               
chr27:427124-426708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 307
               

               
Conread position:
               
54-319
               

               
Cow position:
               
chr27:29312521-29312808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
55-336
               

               
Cow position:
               
chr27:14343320-14343600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
55-434
               

               
Cow position:
               
chr27:27460424-27460823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
32, 202
               

               
Conread position:
               
56-249
               

               
Cow position:
               
chr27:4011820-4011622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
56-420
               

               
Cow position:
               
chr27:7649436-7649821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
60-356
               

               
Cow position:
               
chr27:16589570-16589871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 157
               

               
Conread position:
               
61-353
               

               
Cow position:
               
chr27:17331644-17331337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 271
               

               
Conread position:
               
62-289
               

               
Cow position:
               
chr27:20789239-20789478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
70-456
               

               
Cow position:
               
chr27:16103936-16103546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
75-343
               

               
Cow position:
               
chr27:8405711-8405977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
75-457
               

               
Cow position:
               
chr27:8168302-8168693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
31, 253
               

               
Conread position:
               
79-420
               

               
Cow position:
               
chr27:11151796-11151441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
86-337
               

               
Cow position:
               
chr27:22569888-22569633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
90-455
               

               
Cow position:
               
chr27:26226178-26226553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
94-316
               

               
Cow position:
               
chr27:16626005-16625769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
94-419
               

               
Cow position:
               
chr27:27694664-27695004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
104-336
               

               
Cow position:
               
chr27:20092742-20092985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
105-448
               

               
Cow position:
               
chr27:22386965-22386631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
77, 111
               

               
Conread position:
               
106-427
               

               
Cow position:
               
chr27:15378386-15378719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
106-452
               

               
Cow position:
               
chr27:20078961-20078597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 226
               

               
Conread position:
               
107-394
               

               
Cow position:
               
chr27:20481284-20481560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
107-433
               

               
Cow position:
               
chr27:23594409-23594076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
122-434
               

               
Cow position:
               
chr27:590687-591015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
123-435
               

               
Cow position:
               
chr27:26087371-26087075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
134-434
               

               
Cow position:
               
chr27:29164831-29164530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
57, 46
               

               
Conread position:
               
135-361
               

               
Cow position:
               
chr27:26407100-26407333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 209
               

               
Conread position:
               
140-434
               

               
Cow position:
               
chr27:16965633-16965331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
40, 55
               

               
Conread position:
               
156-420
               

               
Cow position:
               
chr27:23485257-23484986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
31, 186
               

               
Conread position:
               
156-446
               

               
Cow position:
               
chr27:26852548-26852838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
157-419
               

               
Cow position:
               
chr27:23107858-23108131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 208
               

               
Conread position:
               
160-428
               

               
Cow position:
               
chr27:12459321-12459050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
165-454
               

               
Cow position:
               
chr27:23559995-23560293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 189
               

               
Conread position:
               
186-433
               

               
Cow position:
               
chr27:31210559-31210306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 144
               

               
Conread position:
               
194-446
               

               
Cow position:
               
chr27:19509012-19508757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
24, 152
               

               
Conread position:
               
200-448
               

               
Cow position:
               
chr27:29615045-29614779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 158
               

               
Conread position:
               
211-453
               

               
Cow position:
               
chr27:7343446-7343687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 121
               

               
Conread position:
               
214-447
               

               
Cow position:
               
chr27:6106678-6106450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 134
               

               
Conread position:
               
218-453
               

               
Cow position:
               
chr27:15003004-15003246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
61, 146
               

               
Conread position:
               
225-424
               

               
Cow position:
               
chr27:26323415-26323208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
232-437
               

               
Cow position:
               
chr27:19576363-19576572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 115
               

               
Conread position:
               
236-448
               

               
Cow position:
               
chr27:11134043-11133829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
5, 111
               

               
Conread position:
               
240-412
               

               
Cow position:
               
chr27:15859345-15859519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 112
               

               
Conread position:
               
241-419
               

               
Cow position:
               
chr27:26504253-26504075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
34, 120
               

               
Conread position:
               
279-449
               

               
Cow position:
               
chr27:22748234-22748067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 61
               

               
Conread position:
               
280-449
               

               
Cow position:
               
chr27:31183481-31183314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 60
               
Show alignments to all cow chromosomes.