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Cow genome map

           
Conread name:
           
Mixn-0006h23
        

               
Conread position:
               
1-158
               

               
Cow position:
               
chr3:22908102-22907940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr3:61262535-61262698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr3:35975373-35975200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr3:51609548-51609729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr3:5899558-5899730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr3:18607100-18607284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
16, 154
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr3:8147931-8147755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 19
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr3:16004254-16004076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 72
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr3:18854825-18855009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 74
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr3:56704805-56704630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
105, 68
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr3:80082085-80081909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr3:23277813-23277602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr3:49731905-49731700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr3:63861169-63860951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr3:32399523-32399313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr3:15081007-15080802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 87
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr3:8716979-8717197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr3:20129673-20129890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr3:22872320-22872098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr3:61678423-61678643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
92, 106
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr3:81939983-81940206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr3:35299406-35299617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
136, 82
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr3:61191185-61190951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
105, 72
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr3:11019850-11020093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr3:28675721-28675962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr3:35283365-35283113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr3:58383700-58383936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
108, 197
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr3:77496549-77496816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr3:19789387-19789125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
87, 113
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr3:29807194-29807457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr3:17451202-17450942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
87, 147
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr3:364487-364213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:42177892-42178164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:67929534-67929253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
85, 40
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr3:49218575-49218302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr3:53384551-53384267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
105, 84
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr3:18763626-18763904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
105, 78
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr3:5851195-5850912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr3:31206604-31206893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr3:61278638-61278926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 251
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr3:79902235-79902513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
107, 218
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr3:35852735-35852450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr3:14626418-14626127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr3:77224852-77225142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
170, 145
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr3:81277972-81277672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr3:26493492-26493202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
84, 15
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr3:19708367-19708077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr3:53112900-53113206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr3:79592157-79591855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 225
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr3:31047210-31046903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
108, 30
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr3:56637-56321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr3:66610106-66609787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
99, 76
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr3:12286967-12287293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 45
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr3:70895778-70896119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 186
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr3:75711051-75711377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr3:4031700-4032037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
86, 263
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr3:45534567-45534222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr3:81371388-81371723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
180, 80
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr3:26219329-26218971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
87, 19
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr3:72675819-72676171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr3:5101028-5100691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 24
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr3:74533080-74533431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 186
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr3:45647407-45647763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 167
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr3:53739459-53739101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr3:59798986-59799332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
78, 63
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr3:525086-525434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
105, 78
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr3:10347086-10347443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr3:28908463-28908115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
181, 78
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr3:83816061-83815700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 125
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr3:19006399-19006747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 93
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr3:29887692-29887329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 70
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr3:67744896-67744538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 162
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr3:66292446-66292085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:5365418-5365770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
97, 73
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:49650112-49650481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
79, 15
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr3:63179600-63179938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
131, 83
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr3:38691673-38691308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
114, 15
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr3:13330040-13329684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
178, 16
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr3:47284570-47284912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:50069511-50069866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
182, 75
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:59630768-59630410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:69961979-69961637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
182, 105
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:70899632-70899991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 108
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr3:56059539-56059916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 80
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:29812976-29813338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:67704272-67704652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 355
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr3:68881377-68881015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr3:49327676-49328051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr3:73443355-73442985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 281
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr3:78894582-78894224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
103, 74
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr3:54945857-54946247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 23
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr3:26682061-26681688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr3:28898490-28898092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr3:70566006-70565599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 236
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr3:44101713-44102113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 61
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr3:69417056-69416623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
87, 332
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr3:53150059-53150490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 118
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr3:2024916-2025361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr3:17222412-17221975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 75
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr3:20663806-20663381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
87, 228
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr3:70334971-70334531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr3:80053802-80053376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
96, 85
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr3:4461757-4461328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 349
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr3:18066866-18067292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
79, 323
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr3:53046925-53046496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 178
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr3:59001013-59000601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
185, 15
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr3:65236757-65237185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
107, 64
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr3:75158097-75158519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
181, 96
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr3:2397051-2396630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 277
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr3:73961947-73961527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
96, 103
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr3:3985062-3985486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
181, 100
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr3:74600849-74601283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
175, 74
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr3:78443831-78443396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
103, 212
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr3:32584890-32585328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 83
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr3:55190018-55189574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:2630530-2630937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 81
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:13899721-13899278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 257
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:14552610-14553048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
105, 165
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:15052205-15051776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
179, 21
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:23169338-23168891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 259
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:25690517-25690976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
87, 202
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:26065733-26066166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 227
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:31309623-31309178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
105, 356
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:51578589-51578148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 133
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:54782280-54781816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:59604603-59605021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 18
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:64281204-64280761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 350
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:65968887-65969351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr3:78076921-78077367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 168
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr3:22676350-22675930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
187, 41
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr3:7763395-7763837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 179
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr3:27274272-27274709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr3:53592968-53592507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
87, 23
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr3:59392375-59391946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr3:75479744-75480180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 78
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr3:80973085-80973530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 157
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr3:2393234-2392783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
80, 109
               

               
Conread position:
               
1-446
               

               
Cow position:
               
chr3:50768411-50768866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
1-446
               

               
Cow position:
               
chr3:53790812-53790355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr3:38863845-38864307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr3:76138221-76138648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
133, 78
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr3:1830831-1830384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
105, 43
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr3:30179814-30180273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 101
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr3:48852234-48851774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
87, 25
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr3:54050287-54049839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
94, 67
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr3:80071849-80072332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr3:68586770-68587210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
184, 52
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr3:83474481-83474943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 8
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr3:2674761-2675219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 339
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr3:17957199-17957654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
107, 34
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chr3:13302124-13301653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 335
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr3:210054-210518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr3:36570318-36569843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
79, 292
               

               
Conread position:
               
1-459
               

               
Cow position:
               
chr3:71497414-71496931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 110
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr3:17937107-17936645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 183
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr3:31419433-31419895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
90, 216
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr3:53429159-53428716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr3:68708269-68707813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
1-480
               

               
Cow position:
               
chr3:15158773-15159252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 187
               

               
Conread position:
               
1-510
               

               
Cow position:
               
chr3:39066065-39066586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 185
               

               
Conread position:
               
2-142
               

               
Cow position:
               
chr3:78093931-78093795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
2-148
               

               
Cow position:
               
chr3:8901154-8901300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
104, 33
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chr3:52017489-52017682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr3:61467338-61467530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
86, 164
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr3:72018852-72019054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
104, 84
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr3:55117239-55117023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
93, 207
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chr3:67544141-67543820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
2-327
               

               
Cow position:
               
chr3:58969163-58968829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 73
               

               
Conread position:
               
2-344
               

               
Cow position:
               
chr3:8393668-8394033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 110
               

               
Conread position:
               
2-385
               

               
Cow position:
               
chr3:73708783-73709174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr3:60597281-60597703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
131, 63
               

               
Conread position:
               
2-434
               

               
Cow position:
               
chr3:33253149-33252716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 188
               

               
Conread position:
               
2-434
               

               
Cow position:
               
chr3:57754751-57754299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
86, 258
               

               
Conread position:
               
2-434
               

               
Cow position:
               
chr3:59473845-59474297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
86, 106
               

               
Conread position:
               
2-436
               

               
Cow position:
               
chr3:73394849-73395292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 254
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr3:54903302-54903746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
2-448
               

               
Cow position:
               
chr3:18393651-18393210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 77
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr3:2903556-2903384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
105, 130
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr3:27285959-27286184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr3:20471625-20471341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chr3:59208548-59208889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 213
               

               
Conread position:
               
4-171
               

               
Cow position:
               
chr3:36657035-36656865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr3:34392361-34392183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr3:49454970-49455152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr3:55970960-55971140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
84, 104
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr3:1299968-1300172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 122
               

               
Conread position:
               
4-218
               

               
Cow position:
               
chr3:71161529-71161750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chr3:71430477-71430253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 216
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chr3:78530271-78530488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 145
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr3:78201002-78201240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr3:59701748-59701977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr3:45523999-45524284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
90, 77
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr3:46900930-46901216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr3:21341229-21340942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
92, 50
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr3:18459785-18459437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
131, 200
               

               
Conread position:
               
4-358
               

               
Cow position:
               
chr3:82460918-82461282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
4-414
               

               
Cow position:
               
chr3:68627940-68627531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 75
               

               
Conread position:
               
4-420
               

               
Cow position:
               
chr3:49119297-49118868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
24, 255
               

               
Conread position:
               
4-423
               

               
Cow position:
               
chr3:61225000-61224584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
68, 107
               

               
Conread position:
               
4-431
               

               
Cow position:
               
chr3:10958493-10958070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 12
               

               
Conread position:
               
4-434
               

               
Cow position:
               
chr3:31298425-31297981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
81, 219
               

               
Conread position:
               
4-434
               

               
Cow position:
               
chr3:57763958-57764390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 219
               

               
Conread position:
               
4-448
               

               
Cow position:
               
chr3:9663452-9662981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
87, 350
               

               
Conread position:
               
4-452
               

               
Cow position:
               
chr3:9641299-9641748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 342
               

               
Conread position:
               
5-176
               

               
Cow position:
               
chr3:8557045-8556876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
98, 64
               

               
Conread position:
               
5-343
               

               
Cow position:
               
chr3:50614375-50614731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
97, 79
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chr3:73460715-73461071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 20
               

               
Conread position:
               
5-420
               

               
Cow position:
               
chr3:48566931-48566527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
5-449
               

               
Cow position:
               
chr3:20675143-20674691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
5-454
               

               
Cow position:
               
chr3:68647896-68648369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
77, 335
               

               
Conread position:
               
6-212
               

               
Cow position:
               
chr3:77227055-77227272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
6-454
               

               
Cow position:
               
chr3:56582580-56583047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 336
               

               
Conread position:
               
7-263
               

               
Cow position:
               
chr3:33698459-33698734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
81, 255
               

               
Conread position:
               
7-419
               

               
Cow position:
               
chr3:45881647-45882060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 150
               

               
Conread position:
               
7-423
               

               
Cow position:
               
chr3:2506743-2506311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 307
               

               
Conread position:
               
7-434
               

               
Cow position:
               
chr3:59596942-59597350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
175, 39
               

               
Conread position:
               
7-434
               

               
Cow position:
               
chr3:75080504-75080931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 164
               

               
Conread position:
               
7-445
               

               
Cow position:
               
chr3:48362821-48363258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
8-353
               

               
Cow position:
               
chr3:51234357-51233995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
98, 83
               

               
Conread position:
               
8-358
               

               
Cow position:
               
chr3:48241360-48241716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
174, 95
               

               
Conread position:
               
8-437
               

               
Cow position:
               
chr3:39661709-39661275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
124, 19
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr3:79220590-79220813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
92, 200
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr3:31771439-31771707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
121, 154
               

               
Conread position:
               
10-316
               

               
Cow position:
               
chr3:73759776-73759454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
10-343
               

               
Cow position:
               
chr3:36672262-36671903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 350
               

               
Conread position:
               
10-429
               

               
Cow position:
               
chr3:16333547-16333975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
120, 91
               

               
Conread position:
               
10-438
               

               
Cow position:
               
chr3:52607924-52608359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 208
               

               
Conread position:
               
10-447
               

               
Cow position:
               
chr3:82020103-82019654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
77, 349
               

               
Conread position:
               
10-455
               

               
Cow position:
               
chr3:7338033-7337590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 148
               

               
Conread position:
               
11-161
               

               
Cow position:
               
chr3:58158725-58158569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
11-205
               

               
Cow position:
               
chr3:4087424-4087223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
11-215
               

               
Cow position:
               
chr3:54881498-54881711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
11-241
               

               
Cow position:
               
chr3:8604272-8604037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
11-281
               

               
Cow position:
               
chr3:68583261-68582983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
11-303
               

               
Cow position:
               
chr3:65800334-65800635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
25, 134
               

               
Conread position:
               
11-343
               

               
Cow position:
               
chr3:45647881-45648220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
171, 83
               

               
Conread position:
               
11-353
               

               
Cow position:
               
chr3:55272301-55271947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 77
               

               
Conread position:
               
11-356
               

               
Cow position:
               
chr3:61143835-61144199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
78, 108
               

               
Conread position:
               
11-358
               

               
Cow position:
               
chr3:81471359-81470991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
95, 271
               

               
Conread position:
               
11-394
               

               
Cow position:
               
chr3:80564702-80565100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
11-434
               

               
Cow position:
               
chr3:8060874-8061296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
95, 66
               

               
Conread position:
               
11-434
               

               
Cow position:
               
chr3:39970130-39969687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 353
               

               
Conread position:
               
11-434
               

               
Cow position:
               
chr3:71237899-71238326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
11-435
               

               
Cow position:
               
chr3:83442138-83441715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
67, 32
               

               
Conread position:
               
11-438
               

               
Cow position:
               
chr3:23408601-23408185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 59
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chr3:14633244-14632960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 67
               

               
Conread position:
               
12-337
               

               
Cow position:
               
chr3:5374076-5374412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
76, 98
               

               
Conread position:
               
12-353
               

               
Cow position:
               
chr3:56476425-56476780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 76
               

               
Conread position:
               
12-437
               

               
Cow position:
               
chr3:3556287-3556727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
12-456
               

               
Cow position:
               
chr3:7331374-7330944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 196
               

               
Conread position:
               
12-458
               

               
Cow position:
               
chr3:49482963-49482512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
13-181
               

               
Cow position:
               
chr3:23269846-23270012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
13-267
               

               
Cow position:
               
chr3:49793156-49793403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
13-419
               

               
Cow position:
               
chr3:13353101-13353525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 365
               

               
Conread position:
               
13-446
               

               
Cow position:
               
chr3:18686660-18687092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
165, 64
               

               
Conread position:
               
13-452
               

               
Cow position:
               
chr3:55970248-55970709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
75, 95
               

               
Conread position:
               
14-204
               

               
Cow position:
               
chr3:48578586-48578771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
14-416
               

               
Cow position:
               
chr3:16752508-16752096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 133
               

               
Conread position:
               
15-159
               

               
Cow position:
               
chr3:18471179-18471038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
65, 80
               

               
Conread position:
               
15-236
               

               
Cow position:
               
chr3:41328201-41328419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
167, 82
               

               
Conread position:
               
15-343
               

               
Cow position:
               
chr3:18725888-18725554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
16-174
               

               
Cow position:
               
chr3:12563226-12563385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
16-420
               

               
Cow position:
               
chr3:5045063-5044648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 222
               

               
Conread position:
               
17-250
               

               
Cow position:
               
chr3:31501095-31501338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
17-253
               

               
Cow position:
               
chr3:74409239-74409478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
165, 58
               

               
Conread position:
               
17-420
               

               
Cow position:
               
chr3:25754784-25755197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 77
               

               
Conread position:
               
17-454
               

               
Cow position:
               
chr3:74233943-74234378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 60
               

               
Conread position:
               
18-343
               

               
Cow position:
               
chr3:11711702-11712045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
18-459
               

               
Cow position:
               
chr3:52652325-52651875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
21-181
               

               
Cow position:
               
chr3:26894413-26894575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
21-232
               

               
Cow position:
               
chr3:22924646-22924438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
161, 25
               

               
Conread position:
               
21-277
               

               
Cow position:
               
chr3:55947327-55947601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 240
               

               
Conread position:
               
21-430
               

               
Cow position:
               
chr3:44932260-44932686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 339
               

               
Conread position:
               
21-436
               

               
Cow position:
               
chr3:43233255-43233680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
67, 181
               

               
Conread position:
               
21-437
               

               
Cow position:
               
chr3:59610972-59610540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 339
               

               
Conread position:
               
22-366
               

               
Cow position:
               
chr3:3738237-3738592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 131
               

               
Conread position:
               
23-263
               

               
Cow position:
               
chr3:75057365-75057127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
176, 42
               

               
Conread position:
               
23-324
               

               
Cow position:
               
chr3:23445136-23444817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
83, 56
               

               
Conread position:
               
23-355
               

               
Cow position:
               
chr3:115961-116290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
25-181
               

               
Cow position:
               
chr3:35074437-35074597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
25-360
               

               
Cow position:
               
chr3:77006261-77006575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
26-416
               

               
Cow position:
               
chr3:53221771-53222170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 327
               

               
Conread position:
               
27-356
               

               
Cow position:
               
chr3:60265479-60265153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
27-448
               

               
Cow position:
               
chr3:12705801-12705356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
52, 324
               

               
Conread position:
               
29-262
               

               
Cow position:
               
chr3:83201768-83201523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
32-205
               

               
Cow position:
               
chr3:4861452-4861624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 132
               

               
Conread position:
               
32-263
               

               
Cow position:
               
chr3:34937603-34937851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
32-364
               

               
Cow position:
               
chr3:13507226-13507577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
48, 333
               

               
Conread position:
               
33-177
               

               
Cow position:
               
chr3:79196614-79196470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
73, 54
               

               
Conread position:
               
34-355
               

               
Cow position:
               
chr3:22232878-22232557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
142, 43
               

               
Conread position:
               
34-356
               

               
Cow position:
               
chr3:17447843-17447514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 313
               

               
Conread position:
               
34-439
               

               
Cow position:
               
chr3:188624-189056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 313
               

               
Conread position:
               
35-448
               

               
Cow position:
               
chr3:68156496-68156918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 115
               

               
Conread position:
               
36-434
               

               
Cow position:
               
chr3:67930411-67929994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
37-433
               

               
Cow position:
               
chr3:81087842-81087461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
38-471
               

               
Cow position:
               
chr3:78092740-78092296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
39-337
               

               
Cow position:
               
chr3:19404093-19404382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
160, 49
               

               
Conread position:
               
40-448
               

               
Cow position:
               
chr3:74754099-74754504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
41-454
               

               
Cow position:
               
chr3:68146064-68145658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
46-406
               

               
Cow position:
               
chr3:74134482-74134855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
64, 157
               

               
Conread position:
               
47-437
               

               
Cow position:
               
chr3:11063156-11063544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 136
               

               
Conread position:
               
48-247
               

               
Cow position:
               
chr3:56301569-56301363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
40, 176
               

               
Conread position:
               
48-434
               

               
Cow position:
               
chr3:83215032-83215445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
58, 317
               

               
Conread position:
               
51-364
               

               
Cow position:
               
chr3:15506228-15506562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 133
               

               
Conread position:
               
51-440
               

               
Cow position:
               
chr3:76268200-76267791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
52-208
               

               
Cow position:
               
chr3:75534895-75535052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 119
               

               
Conread position:
               
52-460
               

               
Cow position:
               
chr3:23105583-23105165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
58, 308
               

               
Conread position:
               
53-277
               

               
Cow position:
               
chr3:74878806-74878572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
54-447
               

               
Cow position:
               
chr3:54506505-54506896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
109, 28
               

               
Conread position:
               
55-316
               

               
Cow position:
               
chr3:78896434-78896710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
55-337
               

               
Cow position:
               
chr3:83845690-83845996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
51, 293
               

               
Conread position:
               
55-419
               

               
Cow position:
               
chr3:70609408-70609786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 314
               

               
Conread position:
               
57-446
               

               
Cow position:
               
chr3:55319110-55318710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
63-437
               

               
Cow position:
               
chr3:27697189-27696785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 271
               

               
Conread position:
               
66-455
               

               
Cow position:
               
chr3:67698076-67698476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
67-329
               

               
Cow position:
               
chr3:7940758-7940481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 177
               

               
Conread position:
               
71-450
               

               
Cow position:
               
chr3:6182398-6182040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
75-459
               

               
Cow position:
               
chr3:53875953-53875563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
79-236
               

               
Cow position:
               
chr3:27212172-27212340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
79-334
               

               
Cow position:
               
chr3:34669918-34669652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 134
               

               
Conread position:
               
80-429
               

               
Cow position:
               
chr3:63269036-63269406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
84-334
               

               
Cow position:
               
chr3:74502507-74502244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
84-378
               

               
Cow position:
               
chr3:20678020-20677721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
22, 263
               

               
Conread position:
               
84-416
               

               
Cow position:
               
chr3:54374046-54373699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 244
               

               
Conread position:
               
84-416
               

               
Cow position:
               
chr3:74079824-74079480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 271
               

               
Conread position:
               
84-437
               

               
Cow position:
               
chr3:26739603-26739245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
48, 208
               

               
Conread position:
               
84-437
               

               
Cow position:
               
chr3:53318218-53318589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
22, 252
               

               
Conread position:
               
88-248
               

               
Cow position:
               
chr3:34294464-34294302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
88-277
               

               
Cow position:
               
chr3:26981883-26982075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 135
               

               
Conread position:
               
90-420
               

               
Cow position:
               
chr3:76922842-76922511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 209
               

               
Conread position:
               
90-433
               

               
Cow position:
               
chr3:70762302-70761945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
16, 147
               

               
Conread position:
               
90-438
               

               
Cow position:
               
chr3:75107615-75107951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
19, 89
               

               
Conread position:
               
94-433
               

               
Cow position:
               
chr3:62046487-62046847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
105-298
               

               
Cow position:
               
chr3:56523592-56523401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
102, 18
               

               
Conread position:
               
105-356
               

               
Cow position:
               
chr3:59884235-59883967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 253
               

               
Conread position:
               
105-416
               

               
Cow position:
               
chr3:68616487-68616177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 149
               

               
Conread position:
               
105-437
               

               
Cow position:
               
chr3:48810799-48810459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
106-356
               

               
Cow position:
               
chr3:53508460-53508712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
171, 75
               

               
Conread position:
               
107-366
               

               
Cow position:
               
chr3:74242835-74243103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 57
               

               
Conread position:
               
107-437
               

               
Cow position:
               
chr3:48073034-48072704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
104, 39
               

               
Conread position:
               
109-433
               

               
Cow position:
               
chr3:77581950-77582282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
18, 237
               

               
Conread position:
               
109-434
               

               
Cow position:
               
chr3:15153534-15153864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
110-438
               

               
Cow position:
               
chr3:24468536-24468204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 208
               

               
Conread position:
               
110-458
               

               
Cow position:
               
chr3:19585704-19586062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 259
               

               
Conread position:
               
111-356
               

               
Cow position:
               
chr3:26874433-26874694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
113-448
               

               
Cow position:
               
chr3:23920584-23920236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
20, 216
               

               
Conread position:
               
116-430
               

               
Cow position:
               
chr3:78093535-78093220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
67, 105
               

               
Conread position:
               
117-420
               

               
Cow position:
               
chr3:3883969-3883658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
66, 213
               

               
Conread position:
               
120-430
               

               
Cow position:
               
chr3:79196612-79196935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
63, 70
               

               
Conread position:
               
121-360
               

               
Cow position:
               
chr3:62789326-62789070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 242
               

               
Conread position:
               
122-437
               

               
Cow position:
               
chr3:55177898-55177569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
8, 237
               

               
Conread position:
               
122-448
               

               
Cow position:
               
chr3:60264860-60264532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
124-356
               

               
Cow position:
               
chr3:1785385-1785141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
126-420
               

               
Cow position:
               
chr3:71238332-71238638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
54, 217
               

               
Conread position:
               
126-434
               

               
Cow position:
               
chr3:54100862-54100536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
56, 90
               

               
Conread position:
               
126-460
               

               
Cow position:
               
chr3:76155846-76156194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
56, 101
               

               
Conread position:
               
127-424
               

               
Cow position:
               
chr3:18426840-18426534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
128-420
               

               
Cow position:
               
chr3:17235348-17235042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
55, 28
               

               
Conread position:
               
135-434
               

               
Cow position:
               
chr3:7661720-7662033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
136-446
               

               
Cow position:
               
chr3:15443861-15443538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 128
               

               
Conread position:
               
146-434
               

               
Cow position:
               
chr3:3316931-3316629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
151-437
               

               
Cow position:
               
chr3:58527281-58527556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
130, 30
               

               
Conread position:
               
155-434
               

               
Cow position:
               
chr3:1036913-1037204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 194
               

               
Conread position:
               
160-448
               

               
Cow position:
               
chr3:9116920-9117227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 197
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chr3:22165523-22165224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
21, 192
               

               
Conread position:
               
178-454
               

               
Cow position:
               
chr3:64196737-64197022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 181
               

               
Conread position:
               
181-431
               

               
Cow position:
               
chr3:49363031-49363281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 8
               

               
Conread position:
               
182-416
               

               
Cow position:
               
chr3:59299493-59299731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
28, 159
               

               
Conread position:
               
185-434
               

               
Cow position:
               
chr3:76269817-76270067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 124
               

               
Conread position:
               
186-414
               

               
Cow position:
               
chr3:10668958-10668723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 166
               

               
Conread position:
               
200-434
               

               
Cow position:
               
chr3:68004763-68004531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 148
               

               
Conread position:
               
200-437
               

               
Cow position:
               
chr3:69785685-69785441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
55, 177
               

               
Conread position:
               
201-456
               

               
Cow position:
               
chr3:49344634-49344891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
208-433
               

               
Cow position:
               
chr3:23132222-23131992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 138
               

               
Conread position:
               
209-367
               

               
Cow position:
               
chr3:38100090-38100255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
60, 139
               

               
Conread position:
               
212-434
               

               
Cow position:
               
chr3:5305750-5305985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
217-420
               

               
Cow position:
               
chr3:26603598-26603384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
224-453
               

               
Cow position:
               
chr3:53084024-53083790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 147
               

               
Conread position:
               
229-413
               

               
Cow position:
               
chr3:35238982-35239166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
229-434
               

               
Cow position:
               
chr3:52845520-52845732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
234-449
               

               
Cow position:
               
chr3:67407392-67407178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
45, 111
               

               
Conread position:
               
281-460
               

               
Cow position:
               
chr3:19611324-19611152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
160, 59
               
Show alignments to all cow chromosomes.