Cow genome map

Conread name: Mixn-0010d11

Conread position: 1-429
Cow position: chr11:43430733-43430312 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 301
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 13, 153

Conread position: 2-198
Cow position: chr11:60302243-60302032 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 202

Conread position: 2-453
Cow position: chr11:20491288-20491731 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 315
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 11, 169

Conread position: 3-182
Cow position: chr11:18484444-18484252 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 11, 151

Conread position: 3-196
Cow position: chr11:38638838-38639046 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 127

Conread position: 3-198
Cow position: chr11:9837381-9837171 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 201

Conread position: 3-199
Cow position: chr11:67940422-67940626 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 11, 35

Conread position: 3-201
Cow position: chr11:7334006-7333790 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 188

Conread position: 3-201
Cow position: chr11:80012116-80011908 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 45

Conread position: 3-288
Cow position: chr11:31885232-31885538 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 183
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 206

Conread position: 3-385
Cow position: chr11:23138343-23137958 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 275
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 34, 9

Conread position: 3-454
Cow position: chr11:43646701-43646242 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 179

Conread position: 4-170
Cow position: chr11:22978138-22977965 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 67, 8

Conread position: 4-198
Cow position: chr11:46451337-46451536 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 8

Conread position: 4-198
Cow position: chr11:58990227-58990432 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 168

Conread position: 4-201
Cow position: chr11:57047244-57047038 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 8

Conread position: 4-390
Cow position: chr11:20601956-20602327 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 266
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 10, 101

Conread position: 4-407
Cow position: chr11:48474427-48474819 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 285
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 8

Conread position: 4-455
Cow position: chr11:61427333-61427757 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 312
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 33, 8

Conread position: 5-201
Cow position: chr11:25332009-25331808 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 32, 7

Conread position: 6-198
Cow position: chr11:18572524-18572730 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 6

Conread position: 6-202
Cow position: chr11:44642565-44642353 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 27, 6

Conread position: 6-206
Cow position: chr11:58614381-58614598 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 59, 6

Conread position: 6-451
Cow position: chr11:18698595-18699055 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 339
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 31, 6

Conread position: 7-182
Cow position: chr11:45646869-45646681 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 5

Conread position: 7-385
Cow position: chr11:1362759-1362372 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 274
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 30, 5

Conread position: 7-386
Cow position: chr11:377930-377545 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 278
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 26, 215

Conread position: 11-198
Cow position: chr11:17112902-17112705 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 21, 188

Conread position: 12-139
Cow position: chr11:39034180-39034318 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 12-191
Cow position: chr11:41577279-41577091 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 54, 25

Conread position: 12-195
Cow position: chr11:21798677-21798866 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 25, 158

Conread position: 12-195
Cow position: chr11:62016544-62016350 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 25, 188

Conread position: 12-195
Cow position: chr11:73478349-73478546 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 51, 25

Conread position: 12-198
Cow position: chr11:8339679-8339479 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 191

Conread position: 12-198
Cow position: chr11:48901352-48901152 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 25, 159

Conread position: 12-198
Cow position: chr11:53130538-53130740 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 193

Conread position: 12-201
Cow position: chr11:8232838-8232638 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 156

Conread position: 12-201
Cow position: chr11:13039404-13039212 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 28

Conread position: 12-201
Cow position: chr11:24967191-24967386 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 58, 17

Conread position: 12-201
Cow position: chr11:36496580-36496775 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 6

Conread position: 12-319
Cow position: chr11:40486206-40485905 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 235
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 13

Conread position: 12-356
Cow position: chr11:23251877-23251526 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 239
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 148

Conread position: 12-384
Cow position: chr11:84891026-84890623 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 282
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 196

Conread position: 12-385
Cow position: chr11:62155356-62155734 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 258
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 52, 25

Conread position: 12-450
Cow position: chr11:48932857-48932405 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 314
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 25, 192

Conread position: 12-452
Cow position: chr11:28395173-28395642 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 315
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 50, 28

Conread position: 12-455
Cow position: chr11:77682905-77683341 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 317
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 30, 57

Conread position: 12-456
Cow position: chr11:41271863-41272308 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 170

Conread position: 12-457
Cow position: chr11:12111742-12111284 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 314
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 25, 148

Conread position: 13-369
Cow position: chr11:51144444-51144793 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 254
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 191

Conread position: 13-407
Cow position: chr11:48428821-48429224 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 276
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 24, 103

Conread position: 13-457
Cow position: chr11:11752792-11752345 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 194

Conread position: 14-198
Cow position: chr11:81174618-81174819 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 192

Conread position: 14-453
Cow position: chr11:56821528-56821075 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 198

Conread position: 15-197
Cow position: chr11:35252254-35252065 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 96

Conread position: 15-198
Cow position: chr11:75748164-75748362 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 155

Conread position: 17-199
Cow position: chr11:35881642-35881842 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 17-453
Cow position: chr11:18145074-18144656 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 312
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 25, 133

Conread position: 18-336
Cow position: chr11:34032464-34032156 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 234
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 48, 182

Conread position: 19-172
Cow position: chr11:47125298-47125463 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 101

Conread position: 20-201
Cow position: chr11:80824902-80825095 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 17, 88

Conread position: 21-355
Cow position: chr11:16262297-16261959 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 226
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 132

Conread position: 32-457
Cow position: chr11:16342494-16342057 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 298
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 38, 125

Conread position: 34-420
Cow position: chr11:64904745-64905130 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 27, 153

Conread position: 71-457
Cow position: chr11:33348389-33348008 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 267
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 81

Conread position: 76-182
Cow position: chr11:16233130-16233022 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 95, 0

Conread position: 77-445
Cow position: chr11:27722163-27722552 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 121

Conread position: 80-457
Cow position: chr11:67236212-67236566 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 270
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 16, 70

Conread position: 95-454
Cow position: chr11:19501784-19502136 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 256
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 154, 47

Conread position: 111-394
Cow position: chr11:35775179-35775442 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 197, 63

Conread position: 115-385
Cow position: chr11:63435362-63435616 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 184
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 59, 80

Conread position: 212-445
Cow position: chr11:50937821-50937579 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 23

Conread position: 213-457
Cow position: chr11:31506774-31507019 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 172
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 35

Conread position: 215-454
Cow position: chr11:21136743-21136982 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 91, 33

Conread position: 216-457
Cow position: chr11:18785940-18785705 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 172, 26

Conread position: 230-386
Cow position: chr11:46952878-46953045 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 230-389
Cow position: chr11:35363422-35363580 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 26

Conread position: 230-453
Cow position: chr11:54134148-54133920 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 24, 137

Conread position: 231-422
Cow position: chr11:14941669-14941476 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 23, 42

Conread position: 246-436
Cow position: chr11:84775032-84775220 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 62, 19

Conread position: 247-454
Cow position: chr11:19259556-19259344 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 6

Conread position: 247-457
Cow position: chr11:52832764-52832555 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 14, 24

Conread position: 248-455
Cow position: chr11:67871644-67871434 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 60, 26

Conread position: 260-452
Cow position: chr11:16232968-16232769 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 6, 192

Conread position: 262-456
Cow position: chr11:81518200-81518010 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 138, 41

Conread position: 265-451
Cow position: chr11:38639087-38639284 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 9

Conread position: 265-457
Cow position: chr11:72869843-72869652 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 90

Conread position: 266-386
Cow position: chr11:29786523-29786402 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 266-412
Cow position: chr11:35536563-35536707 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 42, 50

Conread position: 266-457
Cow position: chr11:27462122-27461920 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 42, 48

Conread position: 266-457
Cow position: chr11:42083448-42083644 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 119, 39

Conread position: 267-455
Cow position: chr11:24216118-24216306 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 5, 41

Conread position: 268-451
Cow position: chr11:9368806-9368991 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 146
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 81, 40

Conread position: 269-456
Cow position: chr11:79884467-79884665 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 274-455
Cow position: chr11:40269611-40269429 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 150

Conread position: 279-451
Cow position: chr11:8106057-8106226 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 145, 28

Conread position: 287-456
Cow position: chr11:29978340-29978163 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 21, 0

Conread position: 307-452
Cow position: chr11:49218330-49218181 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 91, 0

Conread position: 310-454
Cow position: chr11:54058012-54058159 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 90, 29

Show alignments to all cow chromosomes.