Cow genome map
| Conread name: | Mixn-0010d11 |
| Conread position: | 2-197 |
| Cow position: | chr12:40910595-40910382 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 205 |
| Conread position: | 2-198 |
| Cow position: | chr12:21486291-21486493 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 3-180 |
| Cow position: | chr12:44766779-44766971 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 11, 148 |
| Conread position: | 3-386 |
| Cow position: | chr12:6210461-6210082 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 215 |
| Conread position: | 3-443 |
| Cow position: | chr12:16543872-16543442 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 321 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 11, 113 |
| Conread position: | 3-454 |
| Cow position: | chr12:33457846-33458287 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 199 |
| Conread position: | 4-198 |
| Cow position: | chr12:11583101-11583303 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 151 |
| Conread position: | 4-385 |
| Cow position: | chr12:6411031-6410659 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 10, 196 |
| Conread position: | 4-412 |
| Cow position: | chr12:30805552-30805958 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 10, 201 |
| Conread position: | 4-451 |
| Cow position: | chr12:6687566-6688048 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 332 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 5-195 |
| Cow position: | chr12:25513610-25513793 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 135, 9 |
| Conread position: | 6-454 |
| Cow position: | chr12:31429859-31429426 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 6-455 |
| Cow position: | chr12:18769375-18768924 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 6 |
| Conread position: | 7-196 |
| Cow position: | chr12:40270384-40270186 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 8-385 |
| Cow position: | chr12:29484190-29483812 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 6, 155 |
| Conread position: | 9-457 |
| Cow position: | chr12:5714331-5714787 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 5, 198 |
| Conread position: | 12-166 |
| Cow position: | chr12:14414036-14414199 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 25, 119 |
| Conread position: | 12-172 |
| Cow position: | chr12:9229776-9229601 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 12-187 |
| Cow position: | chr12:4116211-4116390 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 12-197 |
| Cow position: | chr12:17881578-17881770 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 54 |
| Conread position: | 12-198 |
| Cow position: | chr12:31228285-31228482 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 54, 8 |
| Conread position: | 12-370 |
| Cow position: | chr12:18518377-18518733 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 94 |
| Conread position: | 12-384 |
| Cow position: | chr12:30919142-30919499 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 12-453 |
| Cow position: | chr12:47803861-47804300 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 25, 145 |
| Conread position: | 13-422 |
| Cow position: | chr12:27039059-27038629 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 14-196 |
| Cow position: | chr12:28011191-28010993 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 191 |
| Conread position: | 14-453 |
| Cow position: | chr12:5539258-5538827 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 151 |
| Conread position: | 16-198 |
| Cow position: | chr12:22261104-22260916 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 19-448 |
| Cow position: | chr12:37727860-37728289 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 302 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 14, 100 |
| Conread position: | 19-448 |
| Cow position: | chr12:37733064-37732636 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 14, 100 |
| Conread position: | 29-193 |
| Cow position: | chr12:18081818-18081643 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 125 |
| Conread position: | 96-436 |
| Cow position: | chr12:27365731-27366055 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 77, 95 |
| Conread position: | 96-451 |
| Cow position: | chr12:25312567-25312231 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 328, 60 |
| Conread position: | 99-394 |
| Cow position: | chr12:7299660-7299375 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 207, 43 |
| Conread position: | 216-398 |
| Cow position: | chr12:42285879-42286058 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 229-451 |
| Cow position: | chr12:10763166-10763409 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 230-457 |
| Cow position: | chr12:9229583-9229347 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 238-404 |
| Cow position: | chr12:25444836-25445007 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 164 |
| Conread position: | 248-455 |
| Cow position: | chr12:47486769-47486985 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 260-452 |
| Cow position: | chr12:42477960-42478155 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 6, 29 |
| Conread position: | 261-457 |
| Cow position: | chr12:30413997-30413788 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 261-457 |
| Cow position: | chr12:44907967-44908163 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 137, 39 |
| Conread position: | 262-450 |
| Cow position: | chr12:17664427-17664610 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 265-386 |
| Cow position: | chr12:31517217-31517095 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 265-454 |
| Cow position: | chr12:5680637-5680831 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 265-456 |
| Cow position: | chr12:34161368-34161571 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 274-456 |
| Cow position: | chr12:25933648-25933830 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 66 |
| Conread position: | 289-456 |
| Cow position: | chr12:11081121-11080950 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 297-422 |
| Cow position: | chr12:6123979-6124102 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 10 |
Show alignments to all cow chromosomes.