Cow genome map
| Conread name: | Mixn-0010d11 |
| Conread position: | 2-205 |
| Cow position: | chr15:23703129-23702910 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 203 |
| Conread position: | 3-154 |
| Cow position: | chr15:20486862-20487026 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-182 |
| Cow position: | chr15:23775606-23775791 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 3-194 |
| Cow position: | chr15:17100361-17100564 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 11, 198 |
| Conread position: | 3-196 |
| Cow position: | chr15:24038055-24038254 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 192 |
| Conread position: | 3-198 |
| Cow position: | chr15:14020824-14020615 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 3-198 |
| Cow position: | chr15:25666868-25667080 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 203 |
| Conread position: | 3-201 |
| Cow position: | chr15:6282583-6282792 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 166 |
| Conread position: | 3-201 |
| Cow position: | chr15:7962432-7962219 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 183 |
| Conread position: | 3-369 |
| Cow position: | chr15:4535262-4534903 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 11, 127 |
| Conread position: | 3-377 |
| Cow position: | chr15:43248416-43248793 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 204 |
| Conread position: | 3-457 |
| Cow position: | chr15:20482482-20482946 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 165 |
| Conread position: | 4-182 |
| Cow position: | chr15:33976339-33976531 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 4-192 |
| Cow position: | chr15:36781984-36782180 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 4-197 |
| Cow position: | chr15:33679046-33678844 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 4-198 |
| Cow position: | chr15:1329749-1329960 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 8 |
| Conread position: | 4-198 |
| Cow position: | chr15:11362830-11363035 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 4-198 |
| Cow position: | chr15:21388815-21389026 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 62, 8 |
| Conread position: | 4-207 |
| Cow position: | chr15:21801817-21802031 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 166 |
| Conread position: | 6-193 |
| Cow position: | chr15:42143205-42143002 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 14, 121 |
| Conread position: | 6-196 |
| Cow position: | chr15:19403327-19403125 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 6-201 |
| Cow position: | chr15:18018260-18018063 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 36, 6 |
| Conread position: | 6-201 |
| Cow position: | chr15:24044748-24044957 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 6-384 |
| Cow position: | chr15:16616544-16616169 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 7-377 |
| Cow position: | chr15:35642369-35641999 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 8-442 |
| Cow position: | chr15:10570270-10570698 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 129 |
| Conread position: | 8-453 |
| Cow position: | chr15:5722330-5722755 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 96 |
| Conread position: | 11-429 |
| Cow position: | chr15:28177808-28177383 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 12-182 |
| Cow position: | chr15:16583367-16583546 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 104 |
| Conread position: | 12-187 |
| Cow position: | chr15:26079025-26079209 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 12-191 |
| Cow position: | chr15:5984261-5984444 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 12-195 |
| Cow position: | chr15:23767920-23768119 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 193 |
| Conread position: | 12-197 |
| Cow position: | chr15:22938992-22939181 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 12-198 |
| Cow position: | chr15:5234660-5234859 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 190 |
| Conread position: | 12-198 |
| Cow position: | chr15:22751796-22751593 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 160 |
| Conread position: | 12-454 |
| Cow position: | chr15:15215365-15214920 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 323 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 30, 194 |
| Conread position: | 14-386 |
| Cow position: | chr15:20370124-20370479 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 14-457 |
| Cow position: | chr15:21894125-21893661 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 21, 192 |
| Conread position: | 14-457 |
| Cow position: | chr15:37931426-37931853 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 317 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 23, 106 |
| Conread position: | 15-182 |
| Cow position: | chr15:23180764-23180592 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 92 |
| Conread position: | 15-453 |
| Cow position: | chr15:50177437-50177013 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 26-366 |
| Cow position: | chr15:13387414-13387072 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 11, 183 |
| Conread position: | 55-457 |
| Cow position: | chr15:24411700-24411321 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 76-198 |
| Cow position: | chr15:11646218-11646345 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 118 |
| Conread position: | 95-413 |
| Cow position: | chr15:9001207-9000905 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 56, 74 |
| Conread position: | 95-422 |
| Cow position: | chr15:53045632-53045940 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 182, 53 |
| Conread position: | 95-451 |
| Cow position: | chr15:37964786-37964454 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 91, 63 |
| Conread position: | 95-454 |
| Cow position: | chr15:25689223-25688869 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 95-456 |
| Cow position: | chr15:12170489-12170145 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 213, 82 |
| Conread position: | 98-454 |
| Cow position: | chr15:2144889-2145230 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 76, 8 |
| Conread position: | 136-451 |
| Cow position: | chr15:6749647-6749938 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 212-454 |
| Cow position: | chr15:8230420-8230659 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 212-455 |
| Cow position: | chr15:8022195-8021958 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 186, 24 |
| Conread position: | 216-394 |
| Cow position: | chr15:35440936-35441110 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 217-404 |
| Cow position: | chr15:2141155-2141344 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 6, 169 |
| Conread position: | 230-452 |
| Cow position: | chr15:14020620-14020384 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 230-452 |
| Cow position: | chr15:52377674-52377447 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 155, 70 |
| Conread position: | 230-457 |
| Cow position: | chr15:33625102-33624853 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 237-386 |
| Cow position: | chr15:16786799-16786651 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 248-453 |
| Cow position: | chr15:26933836-26934045 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 92 |
| Conread position: | 250-388 |
| Cow position: | chr15:17162307-17162168 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 250-450 |
| Cow position: | chr15:48486745-48486550 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 260-399 |
| Cow position: | chr15:40498191-40498331 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 81 |
| Conread position: | 261-454 |
| Cow position: | chr15:4508248-4508054 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 121 |
| Conread position: | 266-385 |
| Cow position: | chr15:39520264-39520144 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 266-394 |
| Cow position: | chr15:14176403-14176531 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 275-386 |
| Cow position: | chr15:8427349-8427461 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.