Cow genome map
| Conread name: | Mixn-0010d11 |
| Conread position: | 2-206 |
| Cow position: | chr16:7498802-7499014 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 115 |
| Conread position: | 3-172 |
| Cow position: | chr16:54100102-54100272 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 142 |
| Conread position: | 3-182 |
| Cow position: | chr16:11619488-11619680 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-196 |
| Cow position: | chr16:32132263-32132470 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 11, 198 |
| Conread position: | 3-198 |
| Cow position: | chr16:571181-570967 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 34, 205 |
| Conread position: | 3-200 |
| Cow position: | chr16:50014264-50014477 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 202 |
| Conread position: | 3-206 |
| Cow position: | chr16:5740989-5741196 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 204 |
| Conread position: | 3-206 |
| Cow position: | chr16:36911297-36911091 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 3-337 |
| Cow position: | chr16:17606038-17606364 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 3-386 |
| Cow position: | chr16:18205705-18206074 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 11, 103 |
| Conread position: | 3-405 |
| Cow position: | chr16:20634136-20633743 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 280 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 3-453 |
| Cow position: | chr16:18426919-18427365 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 219 |
| Conread position: | 4-198 |
| Cow position: | chr16:23483023-23483240 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 135 |
| Conread position: | 4-198 |
| Cow position: | chr16:43506063-43505856 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 10, 185 |
| Conread position: | 4-201 |
| Cow position: | chr16:4499178-4499385 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 4-388 |
| Cow position: | chr16:43275757-43276134 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 10, 202 |
| Conread position: | 5-182 |
| Cow position: | chr16:7082995-7082802 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 6-182 |
| Cow position: | chr16:55308790-55308605 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 6-195 |
| Cow position: | chr16:42242379-42242172 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 6-197 |
| Cow position: | chr16:33645753-33645958 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 6-197 |
| Cow position: | chr16:53086585-53086389 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 32, 6 |
| Conread position: | 6-198 |
| Cow position: | chr16:18693391-18693189 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 6 |
| Conread position: | 6-198 |
| Cow position: | chr16:30939473-30939681 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 33, 6 |
| Conread position: | 6-199 |
| Cow position: | chr16:14242114-14242318 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 37, 7 |
| Conread position: | 6-199 |
| Cow position: | chr16:34168334-34168546 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 6-385 |
| Cow position: | chr16:49169643-49169267 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 8-198 |
| Cow position: | chr16:33226793-33226592 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 6, 98 |
| Conread position: | 10-182 |
| Cow position: | chr16:43804239-43804429 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 12-196 |
| Cow position: | chr16:49252996-49252811 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 12-197 |
| Cow position: | chr16:4699225-4699037 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 12-198 |
| Cow position: | chr16:590165-589970 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 12-198 |
| Cow position: | chr16:819995-820195 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 191 |
| Conread position: | 12-198 |
| Cow position: | chr16:8933675-8933477 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 189 |
| Conread position: | 12-198 |
| Cow position: | chr16:14754578-14754376 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 12-198 |
| Cow position: | chr16:39417365-39417171 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 35, 185 |
| Conread position: | 12-198 |
| Cow position: | chr16:44973240-44973442 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 25, 193 |
| Conread position: | 12-198 |
| Cow position: | chr16:49125776-49125582 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 185 |
| Conread position: | 12-198 |
| Cow position: | chr16:56150057-56150247 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 12-199 |
| Cow position: | chr16:23737928-23738127 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 189 |
| Conread position: | 12-201 |
| Cow position: | chr16:49126439-49126239 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 25, 158 |
| Conread position: | 12-206 |
| Cow position: | chr16:16424860-16424650 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 194 |
| Conread position: | 12-361 |
| Cow position: | chr16:3246448-3246114 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 25, 179 |
| Conread position: | 12-362 |
| Cow position: | chr16:5726673-5727024 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 55, 25 |
| Conread position: | 12-377 |
| Cow position: | chr16:28833586-28833949 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 155 |
| Conread position: | 12-383 |
| Cow position: | chr16:13611701-13611342 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 12-408 |
| Cow position: | chr16:48340948-48340558 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 22, 136 |
| Conread position: | 12-421 |
| Cow position: | chr16:16096483-16096887 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 191 |
| Conread position: | 12-426 |
| Cow position: | chr16:47662457-47662879 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 194 |
| Conread position: | 12-436 |
| Cow position: | chr16:37062648-37062236 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 58, 25 |
| Conread position: | 12-445 |
| Cow position: | chr16:8315430-8315016 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 12-454 |
| Cow position: | chr16:34210669-34210223 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 314 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 25, 198 |
| Conread position: | 12-456 |
| Cow position: | chr16:13660479-13660046 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 88 |
| Conread position: | 13-196 |
| Cow position: | chr16:15188943-15189125 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 14-206 |
| Cow position: | chr16:43851076-43850878 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 14-457 |
| Cow position: | chr16:23472496-23472950 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 191 |
| Conread position: | 16-385 |
| Cow position: | chr16:13195585-13195225 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 93 |
| Conread position: | 17-455 |
| Cow position: | chr16:48492935-48493368 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 24-421 |
| Cow position: | chr16:32837789-32837397 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 180 |
| Conread position: | 32-199 |
| Cow position: | chr16:51246729-51246896 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 39, 52 |
| Conread position: | 55-445 |
| Cow position: | chr16:45692949-45693320 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 253, 10 |
| Conread position: | 76-385 |
| Cow position: | chr16:28396277-28395967 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 76-450 |
| Cow position: | chr16:19003252-19002909 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 78-196 |
| Cow position: | chr16:22808730-22808608 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 79-437 |
| Cow position: | chr16:689539-689872 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 229, 16 |
| Conread position: | 85-456 |
| Cow position: | chr16:15808808-15809166 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 103, 24 |
| Conread position: | 95-386 |
| Cow position: | chr16:4399568-4399850 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 106-438 |
| Cow position: | chr16:27723066-27723400 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 67, 85 |
| Conread position: | 233-436 |
| Cow position: | chr16:41711636-41711841 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 75 |
| Conread position: | 246-457 |
| Cow position: | chr16:46627868-46627657 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 12, 118 |
| Conread position: | 249-456 |
| Cow position: | chr16:47909367-47909154 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 250-419 |
| Cow position: | chr16:37719135-37719308 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 128 |
| Conread position: | 261-444 |
| Cow position: | chr16:44581083-44580900 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 48, 161 |
| Conread position: | 265-396 |
| Cow position: | chr16:9444954-9445084 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 265-457 |
| Cow position: | chr16:11772254-11772061 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 266-407 |
| Cow position: | chr16:29026202-29026341 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 41 |
| Conread position: | 266-455 |
| Cow position: | chr16:27261953-27261772 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 266-455 |
| Cow position: | chr16:29655319-29655520 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 267-452 |
| Cow position: | chr16:11085386-11085197 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 267-457 |
| Cow position: | chr16:5020073-5019892 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 131, 35 |
| Conread position: | 281-422 |
| Cow position: | chr16:23978424-23978281 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 293-439 |
| Cow position: | chr16:10617833-10617682 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 307-444 |
| Cow position: | chr16:47963327-47963468 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 312-452 |
| Cow position: | chr16:20664331-20664472 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 312-457 |
| Cow position: | chr16:55070480-55070330 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.