Cow genome map
| Conread name: | Mixn-0010d11 |
| Conread position: | 1-201 |
| Cow position: | chr18:11191133-11191346 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 140 |
| Conread position: | 2-201 |
| Cow position: | chr18:13293211-13293428 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 2-207 |
| Cow position: | chr18:8105242-8105022 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 3-149 |
| Cow position: | chr18:36346355-36346194 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-181 |
| Cow position: | chr18:9010434-9010619 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 139 |
| Conread position: | 3-182 |
| Cow position: | chr18:10656148-10656342 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-197 |
| Cow position: | chr18:19159262-19159059 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 100 |
| Conread position: | 3-197 |
| Cow position: | chr18:47931158-47930952 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 104 |
| Conread position: | 3-198 |
| Cow position: | chr18:3180121-3180334 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 205 |
| Conread position: | 3-198 |
| Cow position: | chr18:33606338-33606545 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 3-198 |
| Cow position: | chr18:42747300-42747506 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 3-385 |
| Cow position: | chr18:33157523-33157895 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 11, 119 |
| Conread position: | 3-449 |
| Cow position: | chr18:51298183-51298627 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 201 |
| Conread position: | 3-457 |
| Cow position: | chr18:20127400-20126952 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 156 |
| Conread position: | 4-186 |
| Cow position: | chr18:13508024-13507838 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 4-196 |
| Cow position: | chr18:5189974-5189776 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 96, 8 |
| Conread position: | 4-197 |
| Cow position: | chr18:22121179-22120968 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 9, 200 |
| Conread position: | 4-198 |
| Cow position: | chr18:11166684-11166894 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 4-198 |
| Cow position: | chr18:55552670-55552886 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 8 |
| Conread position: | 4-201 |
| Cow position: | chr18:6881633-6881433 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 6-201 |
| Cow position: | chr18:29768621-29768833 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 7-198 |
| Cow position: | chr18:268103-267903 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 8-201 |
| Cow position: | chr18:48036489-48036693 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 8-229 |
| Cow position: | chr18:32860355-32860586 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 6, 193 |
| Conread position: | 8-453 |
| Cow position: | chr18:18340246-18339792 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 6, 22 |
| Conread position: | 11-191 |
| Cow position: | chr18:11867062-11867248 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 12-196 |
| Cow position: | chr18:16847410-16847604 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 25, 187 |
| Conread position: | 12-198 |
| Cow position: | chr18:5766141-5766326 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 74 |
| Conread position: | 12-198 |
| Cow position: | chr18:13359774-13359978 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 153 |
| Conread position: | 12-201 |
| Cow position: | chr18:45961547-45961352 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 133 |
| Conread position: | 12-233 |
| Cow position: | chr18:52382410-52382633 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 25, 110 |
| Conread position: | 12-349 |
| Cow position: | chr18:14815623-14815304 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 142 |
| Conread position: | 12-389 |
| Cow position: | chr18:55498778-55499155 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 261 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 12-411 |
| Cow position: | chr18:23424640-23425026 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 295 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 15, 142 |
| Conread position: | 13-135 |
| Cow position: | chr18:4673040-4673164 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 13-149 |
| Cow position: | chr18:28800821-28800689 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 13-196 |
| Cow position: | chr18:56159178-56159373 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 16-455 |
| Cow position: | chr18:47525122-47525565 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 302 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 25-453 |
| Cow position: | chr18:5711943-5711506 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 18, 236 |
| Conread position: | 32-192 |
| Cow position: | chr18:49665418-49665249 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 32-200 |
| Cow position: | chr18:1495039-1495220 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 36, 170 |
| Conread position: | 32-452 |
| Cow position: | chr18:29796691-29796279 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 301 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 36, 152 |
| Conread position: | 73-454 |
| Cow position: | chr18:50700459-50700837 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 22 |
| Conread position: | 76-201 |
| Cow position: | chr18:43463618-43463491 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 76-454 |
| Cow position: | chr18:24856058-24855695 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 80-413 |
| Cow position: | chr18:38344599-38344914 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 95-456 |
| Cow position: | chr18:22411806-22411462 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 50 |
| Conread position: | 95-457 |
| Cow position: | chr18:10101302-10101641 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 97-388 |
| Cow position: | chr18:22143724-22143438 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 209, 101 |
| Conread position: | 100-456 |
| Cow position: | chr18:46321171-46320828 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 233, 57 |
| Conread position: | 118-456 |
| Cow position: | chr18:9154717-9155044 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 212-457 |
| Cow position: | chr18:51271842-51271589 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 226-455 |
| Cow position: | chr18:44493564-44493332 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 230-377 |
| Cow position: | chr18:46048668-46048824 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 249-455 |
| Cow position: | chr18:52583933-52584131 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 58 |
| Conread position: | 257-452 |
| Cow position: | chr18:15689237-15689429 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 258-444 |
| Cow position: | chr18:248860-248672 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 260-422 |
| Cow position: | chr18:16298059-16298224 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 261-456 |
| Cow position: | chr18:26372876-26373075 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 79 |
| Conread position: | 262-455 |
| Cow position: | chr18:26843142-26842945 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 181 |
| Conread position: | 266-450 |
| Cow position: | chr18:50359292-50359492 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 267-455 |
| Cow position: | chr18:6157879-6158062 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 131, 38 |
| Conread position: | 276-452 |
| Cow position: | chr18:48036789-48036968 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 278-457 |
| Cow position: | chr18:40035964-40036136 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 282-457 |
| Cow position: | chr18:48717961-48717790 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 293-456 |
| Cow position: | chr18:29949737-29949899 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 47 |
| Conread position: | 325-452 |
| Cow position: | chr18:23807619-23807488 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.