Cow genome map
| Conread name: | Mixn-0010d11 |
| Conread position: | 2-198 |
| Cow position: | chr21:34391173-34390965 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 14, 199 |
| Conread position: | 3-154 |
| Cow position: | chr21:13256604-13256770 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 3-198 |
| Cow position: | chr21:45355636-45355846 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 3-200 |
| Cow position: | chr21:43357461-43357246 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 204 |
| Conread position: | 3-201 |
| Cow position: | chr21:18850420-18850215 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 128 |
| Conread position: | 3-206 |
| Cow position: | chr21:34739647-34739859 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 3-445 |
| Cow position: | chr21:4276796-4276363 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 112 |
| Conread position: | 3-454 |
| Cow position: | chr21:8206588-8207025 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 68 |
| Conread position: | 4-197 |
| Cow position: | chr21:31676299-31676508 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 4-201 |
| Cow position: | chr21:47067086-47066885 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 53, 8 |
| Conread position: | 4-385 |
| Cow position: | chr21:29484785-29485155 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 4-386 |
| Cow position: | chr21:9416043-9416426 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 4-386 |
| Cow position: | chr21:27229994-27229617 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 277 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 4-404 |
| Cow position: | chr21:13585259-13584867 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 10, 156 |
| Conread position: | 4-407 |
| Cow position: | chr21:4399598-4400000 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 10, 152 |
| Conread position: | 4-452 |
| Cow position: | chr21:31662259-31662713 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 212 |
| Conread position: | 4-454 |
| Cow position: | chr21:3236333-3236771 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 309 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 61, 8 |
| Conread position: | 4-455 |
| Cow position: | chr21:3253965-3254402 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 312 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 5-187 |
| Cow position: | chr21:37322490-37322302 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 6-187 |
| Cow position: | chr21:20910290-20910095 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 78 |
| Conread position: | 6-191 |
| Cow position: | chr21:47802457-47802253 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 6-198 |
| Cow position: | chr21:40058609-40058815 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 39, 6 |
| Conread position: | 6-199 |
| Cow position: | chr21:3585553-3585356 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 6-336 |
| Cow position: | chr21:15584600-15584291 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 71, 7 |
| Conread position: | 6-457 |
| Cow position: | chr21:30150466-30149993 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 7-201 |
| Cow position: | chr21:21077133-21077339 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 23, 5 |
| Conread position: | 9-389 |
| Cow position: | chr21:36762857-36763242 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 5, 104 |
| Conread position: | 11-196 |
| Cow position: | chr21:395683-395878 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 11-454 |
| Cow position: | chr21:32574540-32574970 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 62 |
| Conread position: | 12-196 |
| Cow position: | chr21:15445271-15445065 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 197 |
| Conread position: | 12-197 |
| Cow position: | chr21:38900581-38900787 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 21, 200 |
| Conread position: | 12-198 |
| Cow position: | chr21:48484633-48484437 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 12-360 |
| Cow position: | chr21:39401408-39401742 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 25 |
| Conread position: | 12-385 |
| Cow position: | chr21:10263851-10264209 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 12-389 |
| Cow position: | chr21:42414294-42413917 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 25, 168 |
| Conread position: | 12-450 |
| Cow position: | chr21:23801313-23800888 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 12-455 |
| Cow position: | chr21:33727653-33727211 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 130 |
| Conread position: | 12-456 |
| Cow position: | chr21:33997414-33996980 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 316 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 21, 128 |
| Conread position: | 13-198 |
| Cow position: | chr21:32237106-32237305 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 13-201 |
| Cow position: | chr21:28944555-28944352 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 144 |
| Conread position: | 13-454 |
| Cow position: | chr21:30849130-30848680 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 24, 194 |
| Conread position: | 13-455 |
| Cow position: | chr21:15742282-15741833 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 316 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 158 |
| Conread position: | 15-201 |
| Cow position: | chr21:22860813-22861012 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 22, 187 |
| Conread position: | 15-203 |
| Cow position: | chr21:363466-363665 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 22, 130 |
| Conread position: | 21-153 |
| Cow position: | chr21:1510890-1511033 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 21-385 |
| Cow position: | chr21:15976460-15976809 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 29-454 |
| Cow position: | chr21:25800235-25800644 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 62-445 |
| Cow position: | chr21:46607720-46607353 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 73-451 |
| Cow position: | chr21:29978874-29978511 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 84 |
| Conread position: | 95-457 |
| Cow position: | chr21:9940288-9939940 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 108 |
| Conread position: | 230-370 |
| Cow position: | chr21:38268040-38267900 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 230-450 |
| Cow position: | chr21:21223290-21223526 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 113 |
| Conread position: | 246-457 |
| Cow position: | chr21:45355868-45356086 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 250-457 |
| Cow position: | chr21:31576537-31576740 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 148, 57 |
| Conread position: | 259-452 |
| Cow position: | chr21:26753541-26753732 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 50, 166 |
| Conread position: | 261-457 |
| Cow position: | chr21:11675997-11675801 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 140, 42 |
| Conread position: | 265-453 |
| Cow position: | chr21:12301455-12301263 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 43, 124 |
| Conread position: | 265-455 |
| Cow position: | chr21:37235441-37235632 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 43, 159 |
| Conread position: | 274-456 |
| Cow position: | chr21:17807068-17806888 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 127, 29 |
| Conread position: | 276-456 |
| Cow position: | chr21:34739911-34740096 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 282-452 |
| Cow position: | chr21:26147151-26147325 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 283-454 |
| Cow position: | chr21:22398236-22398397 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 25, 57 |
| Conread position: | 284-433 |
| Cow position: | chr21:25159247-25159395 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 5 |
| Conread position: | 308-457 |
| Cow position: | chr21:43344996-43345145 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 116, 103 |
Show alignments to all cow chromosomes.