Cow genome map
| Conread name: | Mixn-0010d11 |
| Conread position: | 3-143 |
| Cow position: | chr28:5117893-5118041 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 3-197 |
| Cow position: | chr28:26614635-26614835 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 3-198 |
| Cow position: | chr28:26719100-26719302 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 3-201 |
| Cow position: | chr28:4536210-4536411 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 3-444 |
| Cow position: | chr28:23675884-23676313 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 11, 93 |
| Conread position: | 4-182 |
| Cow position: | chr28:10682075-10681886 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 4-201 |
| Cow position: | chr28:14218735-14218520 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 4-201 |
| Cow position: | chr28:21873513-21873725 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 133 |
| Conread position: | 4-201 |
| Cow position: | chr28:23621291-23621499 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 4-201 |
| Cow position: | chr28:31872004-31871791 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 5-206 |
| Cow position: | chr28:34636421-34636627 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 107 |
| Conread position: | 6-171 |
| Cow position: | chr28:9426597-9426428 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 6-198 |
| Cow position: | chr28:3024167-3023964 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 6-201 |
| Cow position: | chr28:31972002-31971800 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 6 |
| Conread position: | 6-406 |
| Cow position: | chr28:19026258-19025868 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 8-198 |
| Cow position: | chr28:20409148-20409342 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 63 |
| Conread position: | 8-386 |
| Cow position: | chr28:16085070-16085444 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 25, 205 |
| Conread position: | 10-181 |
| Cow position: | chr28:16475743-16475927 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 10-198 |
| Cow position: | chr28:2905328-2905527 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 160 |
| Conread position: | 12-182 |
| Cow position: | chr28:11786958-11786775 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 12-196 |
| Cow position: | chr28:16253105-16252910 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 12-199 |
| Cow position: | chr28:19222847-19222643 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 194 |
| Conread position: | 12-348 |
| Cow position: | chr28:13371418-13371066 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 12-385 |
| Cow position: | chr28:20124535-20124901 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 175 |
| Conread position: | 12-406 |
| Cow position: | chr28:26743372-26743763 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 276 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 25, 151 |
| Conread position: | 12-451 |
| Cow position: | chr28:18934202-18934640 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 323 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 148 |
| Conread position: | 12-457 |
| Cow position: | chr28:10589279-10588821 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 21, 60 |
| Conread position: | 13-352 |
| Cow position: | chr28:16686784-16687111 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 13-454 |
| Cow position: | chr28:23007977-23007533 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 313 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 24, 186 |
| Conread position: | 14-201 |
| Cow position: | chr28:26784715-26784510 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 14-203 |
| Cow position: | chr28:30978034-30978230 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 23, 141 |
| Conread position: | 14-452 |
| Cow position: | chr28:20963780-20963339 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 330 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 23, 112 |
| Conread position: | 15-445 |
| Cow position: | chr28:616156-616569 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 15-456 |
| Cow position: | chr28:3769902-3769472 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 317 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 22, 154 |
| Conread position: | 16-138 |
| Cow position: | chr28:16879514-16879383 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 32-198 |
| Cow position: | chr28:8408511-8408686 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 80-455 |
| Cow position: | chr28:11007014-11007388 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 119, 15 |
| Conread position: | 95-385 |
| Cow position: | chr28:26982895-26982620 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 211, 47 |
| Conread position: | 95-456 |
| Cow position: | chr28:6643429-6643088 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 213, 61 |
| Conread position: | 95-456 |
| Cow position: | chr28:25826023-25825673 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 57, 97 |
| Conread position: | 95-457 |
| Cow position: | chr28:15082078-15081733 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 223-396 |
| Cow position: | chr28:21873710-21873888 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 122 |
| Conread position: | 231-455 |
| Cow position: | chr28:25340230-25340457 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 247-386 |
| Cow position: | chr28:12046934-12046794 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 248-438 |
| Cow position: | chr28:15677866-15678061 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 255-429 |
| Cow position: | chr28:8335948-8336125 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 9, 95 |
| Conread position: | 258-452 |
| Cow position: | chr28:4274850-4274657 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 260-419 |
| Cow position: | chr28:7805430-7805268 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 260-455 |
| Cow position: | chr28:9294501-9294301 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 261-445 |
| Cow position: | chr28:5979916-5980098 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 79 |
| Conread position: | 263-455 |
| Cow position: | chr28:31165987-31165791 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 77 |
| Conread position: | 265-446 |
| Cow position: | chr28:7156834-7157013 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 265-456 |
| Cow position: | chr28:14508374-14508175 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 266-451 |
| Cow position: | chr28:32365842-32366024 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 42, 107 |
| Conread position: | 269-444 |
| Cow position: | chr28:12999099-12999274 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 115, 38 |
| Conread position: | 288-450 |
| Cow position: | chr28:34122653-34122495 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 108, 13 |
| Conread position: | 296-454 |
| Cow position: | chr28:34749763-34749926 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 307-452 |
| Cow position: | chr28:13061668-13061818 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 309-457 |
| Cow position: | chr28:17625130-17624978 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 30 |
Show alignments to all cow chromosomes.