Cow genome map
| Conread name: | Mixn-0010d11 |
| Conread position: | 3-182 |
| Cow position: | chr29:21529032-21529216 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-197 |
| Cow position: | chr29:2522311-2522514 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 11, 137 |
| Conread position: | 3-198 |
| Cow position: | chr29:12784221-12784011 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 30, 201 |
| Conread position: | 3-201 |
| Cow position: | chr29:21924943-21925158 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 203 |
| Conread position: | 3-201 |
| Cow position: | chr29:40337791-40337581 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 11, 196 |
| Conread position: | 3-444 |
| Cow position: | chr29:9511965-9512429 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 4-198 |
| Cow position: | chr29:29056919-29057124 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 6-454 |
| Cow position: | chr29:24952424-24952890 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 337 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 8-444 |
| Cow position: | chr29:37961234-37960804 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 10-201 |
| Cow position: | chr29:24197890-24197697 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 104 |
| Conread position: | 11-451 |
| Cow position: | chr29:18072671-18073119 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 23, 200 |
| Conread position: | 11-456 |
| Cow position: | chr29:18021933-18021496 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 12-195 |
| Cow position: | chr29:35281246-35281439 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 36 |
| Conread position: | 12-198 |
| Cow position: | chr29:3395853-3396051 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 21, 189 |
| Conread position: | 12-201 |
| Cow position: | chr29:34736722-34736520 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 25, 159 |
| Conread position: | 12-441 |
| Cow position: | chr29:4367464-4367894 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 195 |
| Conread position: | 12-445 |
| Cow position: | chr29:24604405-24603959 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 12-447 |
| Cow position: | chr29:12761710-12762132 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 306 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 18, 102 |
| Conread position: | 12-453 |
| Cow position: | chr29:15940895-15940455 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 318 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 152 |
| Conread position: | 12-457 |
| Cow position: | chr29:13127365-13126941 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 22, 76 |
| Conread position: | 12-457 |
| Cow position: | chr29:35291842-35292292 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 178 |
| Conread position: | 13-198 |
| Cow position: | chr29:32799959-32799763 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 187 |
| Conread position: | 13-198 |
| Cow position: | chr29:34360050-34359861 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 177 |
| Conread position: | 13-455 |
| Cow position: | chr29:11365991-11366418 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 105 |
| Conread position: | 14-455 |
| Cow position: | chr29:356071-356509 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 113 |
| Conread position: | 15-201 |
| Cow position: | chr29:5964664-5964474 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 15-410 |
| Cow position: | chr29:13553878-13554275 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 22, 193 |
| Conread position: | 16-207 |
| Cow position: | chr29:585029-585227 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 23, 146 |
| Conread position: | 32-370 |
| Cow position: | chr29:4520100-4520432 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 169 |
| Conread position: | 32-450 |
| Cow position: | chr29:39023573-39023158 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 42-198 |
| Cow position: | chr29:1395380-1395539 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 69 |
| Conread position: | 86-452 |
| Cow position: | chr29:10153958-10153611 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 297, 56 |
| Conread position: | 95-443 |
| Cow position: | chr29:22895567-22895900 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 211, 62 |
| Conread position: | 95-457 |
| Cow position: | chr29:13634456-13634114 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 206, 50 |
| Conread position: | 109-451 |
| Cow position: | chr29:11005583-11005911 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 200, 33 |
| Conread position: | 212-454 |
| Cow position: | chr29:4691449-4691205 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 70, 30 |
| Conread position: | 230-441 |
| Cow position: | chr29:40337589-40337371 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 30, 123 |
| Conread position: | 231-450 |
| Cow position: | chr29:28979546-28979317 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 78 |
| Conread position: | 259-457 |
| Cow position: | chr29:31651395-31651608 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 261-456 |
| Cow position: | chr29:30350945-30350745 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 266-457 |
| Cow position: | chr29:12625985-12625792 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 269-453 |
| Cow position: | chr29:27688744-27688560 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 39, 130 |
| Conread position: | 280-453 |
| Cow position: | chr29:21012337-21012163 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 118, 145 |
| Conread position: | 283-454 |
| Cow position: | chr29:23742254-23742082 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 58 |
| Conread position: | 286-391 |
| Cow position: | chr29:36435441-36435547 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 291-457 |
| Cow position: | chr29:11677445-11677275 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 23 |
| Conread position: | 307-450 |
| Cow position: | chr29:8794384-8794533 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.