Cow genome map

Conread name: Mixn-0010d11

Conread position: 2-143
Cow position: chr3:3096635-3096481 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 10

Conread position: 3-140
Cow position: chr3:19822255-19822108 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 10, 106

Conread position: 3-182
Cow position: chr3:54050308-54050112 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 11, 165

Conread position: 3-196
Cow position: chr3:13330061-13329857 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 117

Conread position: 3-198
Cow position: chr3:56658-56454 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 109

Conread position: 3-198
Cow position: chr3:27285936-27286155 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 207

Conread position: 3-198
Cow position: chr3:65413564-65413357 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 11, 198

Conread position: 3-198
Cow position: chr3:78946128-78945912 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 207

Conread position: 3-198
Cow position: chr3:80581382-80581587 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 114

Conread position: 3-201
Cow position: chr3:11949642-11949430 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 170

Conread position: 3-201
Cow position: chr3:32869860-32870074 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 172

Conread position: 3-411
Cow position: chr3:33327418-33327826 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 298
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 12, 35

Conread position: 3-455
Cow position: chr3:9641275-9641736 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 319
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 11, 187

Conread position: 4-196
Cow position: chr3:52863471-52863263 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 10, 44

Conread position: 4-196
Cow position: chr3:82460895-82461099 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 10, 114

Conread position: 4-198
Cow position: chr3:20437933-20437729 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 143

Conread position: 4-198
Cow position: chr3:22872340-22872124 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 4-198
Cow position: chr3:70401617-70401824 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 34, 8

Conread position: 4-201
Cow position: chr3:55190036-55189831 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 8

Conread position: 4-206
Cow position: chr3:67044381-67044170 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 8

Conread position: 4-419
Cow position: chr3:66708361-66707945 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 305
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 14, 8

Conread position: 4-455
Cow position: chr3:48629872-48629432 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 310
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 38, 8

Conread position: 4-457
Cow position: chr3:27532948-27532497 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 328
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 38, 8

Conread position: 6-194
Cow position: chr3:75711035-75711230 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 31, 6

Conread position: 6-198
Cow position: chr3:41367267-41367063 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 6

Conread position: 6-198
Cow position: chr3:59596920-59597106 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 6

Conread position: 6-206
Cow position: chr3:36927412-36927213 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 101

Conread position: 6-417
Cow position: chr3:54782296-54781883 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 274
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 5

Conread position: 6-453
Cow position: chr3:54434690-54435147 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 334
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 31, 6

Conread position: 8-456
Cow position: chr3:37186552-37186990 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 30

Conread position: 9-375
Cow position: chr3:27546116-27545740 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 267
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 5, 51

Conread position: 12-179
Cow position: chr3:83369043-83369222 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 12-196
Cow position: chr3:8147942-8147747 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 190

Conread position: 12-196
Cow position: chr3:56704816-56704623 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 69

Conread position: 12-197
Cow position: chr3:42483621-42483823 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 194

Conread position: 12-197
Cow position: chr3:48252618-48252806 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 65, 25

Conread position: 12-198
Cow position: chr3:210043-210239 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 31, 106

Conread position: 12-198
Cow position: chr3:23876719-23876918 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 25, 190

Conread position: 12-198
Cow position: chr3:42177881-42178081 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 98

Conread position: 12-199
Cow position: chr3:7678394-7678592 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 55, 188

Conread position: 12-199
Cow position: chr3:59001024-59000828 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 161

Conread position: 12-201
Cow position: chr3:22170910-22171113 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 25, 191

Conread position: 12-201
Cow position: chr3:26553987-26553788 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 21

Conread position: 12-205
Cow position: chr3:19708378-19708174 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 47

Conread position: 12-384
Cow position: chr3:55124557-55124195 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 25, 151

Conread position: 12-403
Cow position: chr3:1830842-1830469 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 263
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 152

Conread position: 12-404
Cow position: chr3:53046936-53046555 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 272
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 22, 185

Conread position: 12-442
Cow position: chr3:52836181-52835731 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 295
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 160

Conread position: 12-449
Cow position: chr3:28908474-28908041 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 308
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 27, 184

Conread position: 12-453
Cow position: chr3:16343337-16343770 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 307
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 146

Conread position: 12-453
Cow position: chr3:45647858-45648283 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 318
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 12, 114

Conread position: 12-456
Cow position: chr3:26903836-26904281 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 314
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 23, 142

Conread position: 12-457
Cow position: chr3:64172166-64172605 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 322
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 25, 139

Conread position: 13-187
Cow position: chr3:42367767-42367585 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 24, 59

Conread position: 13-454
Cow position: chr3:5374057-5374489 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 316
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 190

Conread position: 14-353
Cow position: chr3:66610115-66609787 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 92

Conread position: 15-457
Cow position: chr3:73764469-73764032 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 322
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 52, 22

Conread position: 16-457
Cow position: chr3:15052212-15051769 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 316
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 55, 21

Conread position: 20-198
Cow position: chr3:84000341-84000536 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 186

Conread position: 21-196
Cow position: chr3:13577453-13577268 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 48, 5

Conread position: 41-453
Cow position: chr3:18686668-18687080 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 300
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 29, 69

Conread position: 70-444
Cow position: chr3:83845694-83846061 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 89

Conread position: 76-456
Cow position: chr3:41718184-41718553 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 252
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 21, 66

Conread position: 80-416
Cow position: chr3:8457464-8457776 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 239
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 94, 15

Conread position: 80-447
Cow position: chr3:74846929-74846552 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 266
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 78, 15

Conread position: 81-369
Cow position: chr3:70334902-70334622 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 193
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 75

Conread position: 82-453
Cow position: chr3:8393741-8394092 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 266
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 28

Conread position: 97-456
Cow position: chr3:11920210-11919875 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 248
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 327, 48

Conread position: 114-457
Cow position: chr3:58765239-58764903 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 251
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 60, 28

Conread position: 139-454
Cow position: chr3:61116995-61116692 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 25, 53

Conread position: 214-450
Cow position: chr3:18214219-18213981 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 77, 29

Conread position: 214-451
Cow position: chr3:57830165-57829926 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 40, 28

Conread position: 214-456
Cow position: chr3:3037005-3036759 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 50, 17

Conread position: 216-369
Cow position: chr3:84175900-84175750 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 91, 20

Conread position: 230-457
Cow position: chr3:3818712-3818947 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 23

Conread position: 230-457
Cow position: chr3:18725722-18725480 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 35, 0

Conread position: 230-457
Cow position: chr3:40100791-40100546 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 184
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 0

Conread position: 232-445
Cow position: chr3:22271515-22271304 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 192, 71

Conread position: 232-452
Cow position: chr3:73741941-73741710 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 18, 0

Conread position: 248-451
Cow position: chr3:59608454-59608655 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 62, 92

Conread position: 248-453
Cow position: chr3:5601215-5601008 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 60, 141

Conread position: 257-453
Cow position: chr3:9074386-9074185 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 158
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 9, 84

Conread position: 257-457
Cow position: chr3:15221558-15221354 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 15, 84

Conread position: 257-457
Cow position: chr3:25076207-25076002 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 7, 84

Conread position: 265-451
Cow position: chr3:909665-909472 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 265-457
Cow position: chr3:37485828-37485636 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 43, 51

Conread position: 266-406
Cow position: chr3:48810676-48810536 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 113

Conread position: 266-412
Cow position: chr3:15153660-15153803 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 117

Conread position: 268-383
Cow position: chr3:11705222-11705338 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 268-453
Cow position: chr3:38347164-38347340 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 156, 39

Conread position: 269-457
Cow position: chr3:24300333-24300530 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 39, 71

Conread position: 269-457
Cow position: chr3:57634233-57634429 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 39, 17

Conread position: 280-452
Cow position: chr3:6900898-6901074 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 28, 92

Conread position: 280-456
Cow position: chr3:36204536-36204708 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 60

Conread position: 283-455
Cow position: chr3:31247654-31247823 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 115, 22

Conread position: 300-454
Cow position: chr3:62798781-62798627 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 8, 124

Show alignments to all cow chromosomes.