Cow genome map
| Conread name: | Mixn-0010d11 |
| Conread position: | 1-391 |
| Cow position: | chr6:8637049-8637440 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 3-157 |
| Cow position: | chr6:14289560-14289394 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 3-187 |
| Cow position: | chr6:10635951-10636145 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-195 |
| Cow position: | chr6:68049210-68049417 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 199 |
| Conread position: | 3-196 |
| Cow position: | chr6:28476958-28477163 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 3-201 |
| Cow position: | chr6:56902638-56902852 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 159 |
| Conread position: | 3-205 |
| Cow position: | chr6:50422296-50422088 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 3-424 |
| Cow position: | chr6:66532027-66531631 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 282 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 3-454 |
| Cow position: | chr6:45065232-45064791 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 320 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 11, 146 |
| Conread position: | 3-454 |
| Cow position: | chr6:54490966-54490502 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 11, 156 |
| Conread position: | 3-456 |
| Cow position: | chr6:31564559-31564106 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 13, 150 |
| Conread position: | 4-384 |
| Cow position: | chr6:40774573-40774180 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 164 |
| Conread position: | 4-452 |
| Cow position: | chr6:9026294-9026737 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 4-454 |
| Cow position: | chr6:24583439-24583009 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 11, 77 |
| Conread position: | 6-198 |
| Cow position: | chr6:20231046-20230842 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 6-198 |
| Cow position: | chr6:45160512-45160308 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 34, 6 |
| Conread position: | 6-199 |
| Cow position: | chr6:47625180-47624975 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 6 |
| Conread position: | 6-457 |
| Cow position: | chr6:57119149-57118718 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 302 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 7-418 |
| Cow position: | chr6:64426969-64427412 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 296 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 8-200 |
| Cow position: | chr6:36195993-36196200 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 114 |
| Conread position: | 8-456 |
| Cow position: | chr6:9008832-9008380 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 6, 208 |
| Conread position: | 12-145 |
| Cow position: | chr6:49821308-49821451 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 12-182 |
| Cow position: | chr6:23695782-23695965 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 12-183 |
| Cow position: | chr6:18988001-18988185 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 12-183 |
| Cow position: | chr6:21534843-21535028 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 12-183 |
| Cow position: | chr6:40031978-40032165 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 12-186 |
| Cow position: | chr6:40264413-40264227 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 12-192 |
| Cow position: | chr6:4383277-4383468 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 12-197 |
| Cow position: | chr6:54369115-54368914 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 12-198 |
| Cow position: | chr6:2012803-2013005 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 193 |
| Conread position: | 12-198 |
| Cow position: | chr6:44098869-44099073 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 195 |
| Conread position: | 12-201 |
| Cow position: | chr6:1510397-1510577 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 12-201 |
| Cow position: | chr6:17669094-17669283 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 62 |
| Conread position: | 12-206 |
| Cow position: | chr6:29077513-29077721 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 194 |
| Conread position: | 12-445 |
| Cow position: | chr6:34235649-34235197 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 251 |
| Conread position: | 12-457 |
| Cow position: | chr6:21590501-21590931 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 12-457 |
| Cow position: | chr6:55475034-55475484 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 13-196 |
| Cow position: | chr6:8804742-8804546 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 189 |
| Conread position: | 13-197 |
| Cow position: | chr6:388956-389155 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 191 |
| Conread position: | 13-198 |
| Cow position: | chr6:24004338-24004527 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 13-457 |
| Cow position: | chr6:16625733-16626172 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 21, 143 |
| Conread position: | 15-172 |
| Cow position: | chr6:54140601-54140769 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 15-198 |
| Cow position: | chr6:44078309-44078503 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 148 |
| Conread position: | 15-385 |
| Cow position: | chr6:47339562-47339203 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 22, 139 |
| Conread position: | 15-450 |
| Cow position: | chr6:56376560-56376131 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 20-404 |
| Cow position: | chr6:54864874-54864490 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 17, 179 |
| Conread position: | 24-385 |
| Cow position: | chr6:38641294-38641645 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 178 |
| Conread position: | 26-450 |
| Cow position: | chr6:36652220-36652639 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 32-453 |
| Cow position: | chr6:12652012-12652423 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 35, 175 |
| Conread position: | 71-404 |
| Cow position: | chr6:445174-445495 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 235, 24 |
| Conread position: | 72-454 |
| Cow position: | chr6:51840130-51840511 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 233, 23 |
| Conread position: | 80-457 |
| Cow position: | chr6:65947216-65946875 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 95-447 |
| Cow position: | chr6:38453900-38453563 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 96-420 |
| Cow position: | chr6:58331771-58332076 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 96-439 |
| Cow position: | chr6:32276817-32277152 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 103 |
| Conread position: | 127-421 |
| Cow position: | chr6:51968981-51969259 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 62, 89 |
| Conread position: | 214-450 |
| Cow position: | chr6:51294270-51294504 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 94, 22 |
| Conread position: | 216-384 |
| Cow position: | chr6:60451410-60451579 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 223-413 |
| Cow position: | chr6:29412796-29412606 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 14, 84 |
| Conread position: | 230-457 |
| Cow position: | chr6:28079917-28079689 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 76, 161 |
| Conread position: | 246-454 |
| Cow position: | chr6:37612123-37612331 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 248-457 |
| Cow position: | chr6:28477184-28477396 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 259-385 |
| Cow position: | chr6:21235068-21235196 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 261-455 |
| Cow position: | chr6:10487616-10487802 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 263-454 |
| Cow position: | chr6:26450344-26450543 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 124, 45 |
| Conread position: | 265-454 |
| Cow position: | chr6:41656010-41655811 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 265-457 |
| Cow position: | chr6:30701478-30701670 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 133, 24 |
| Conread position: | 265-457 |
| Cow position: | chr6:36454564-36454366 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 265-457 |
| Cow position: | chr6:66057804-66058001 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 266-382 |
| Cow position: | chr6:60516658-60516774 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 266-453 |
| Cow position: | chr6:24004569-24004763 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 266-457 |
| Cow position: | chr6:20196266-20196079 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 132, 39 |
| Conread position: | 267-452 |
| Cow position: | chr6:32412600-32412418 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 157, 38 |
| Conread position: | 267-457 |
| Cow position: | chr6:28083981-28083785 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 97, 36 |
| Conread position: | 268-453 |
| Cow position: | chr6:20754266-20754077 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 280-454 |
| Cow position: | chr6:23986414-23986240 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 118, 141 |
| Conread position: | 280-456 |
| Cow position: | chr6:47772916-47772735 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 281-457 |
| Cow position: | chr6:7707182-7707362 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 102, 58 |
| Conread position: | 285-456 |
| Cow position: | chr6:25224291-25224462 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 23, 140 |
| Conread position: | 289-452 |
| Cow position: | chr6:17349761-17349595 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 19, 153 |
| Conread position: | 297-456 |
| Cow position: | chr6:58765351-58765183 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 308-451 |
| Cow position: | chr6:31225783-31225930 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 310-455 |
| Cow position: | chr6:1732418-1732567 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 118 |
Show alignments to all cow chromosomes.