Cow genome map
| Conread name: | Mixn-0010d11 |
| Conread position: | 1-201 |
| Cow position: | chr9:34666705-34666500 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 13, 193 |
| Conread position: | 2-187 |
| Cow position: | chr9:41782189-41781989 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 2-193 |
| Cow position: | chr9:30477506-30477693 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 106, 10 |
| Conread position: | 2-196 |
| Cow position: | chr9:49279747-49279559 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 58 |
| Conread position: | 2-198 |
| Cow position: | chr9:5510020-5509806 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 202 |
| Conread position: | 2-198 |
| Cow position: | chr9:26057156-26057359 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 2-198 |
| Cow position: | chr9:32812642-32812427 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 204 |
| Conread position: | 2-203 |
| Cow position: | chr9:1951974-1952191 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 203 |
| Conread position: | 2-385 |
| Cow position: | chr9:8998651-8998265 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 12, 203 |
| Conread position: | 3-182 |
| Cow position: | chr9:35101162-35100965 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-198 |
| Cow position: | chr9:3070130-3070338 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 3-203 |
| Cow position: | chr9:49764951-49764734 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 156 |
| Conread position: | 3-370 |
| Cow position: | chr9:36445916-36445551 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 11, 153 |
| Conread position: | 3-419 |
| Cow position: | chr9:38546691-38546299 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 3-451 |
| Cow position: | chr9:8951197-8950743 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 318 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 11, 162 |
| Conread position: | 3-456 |
| Cow position: | chr9:5433926-5433468 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 328 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 4-187 |
| Cow position: | chr9:21459863-21460060 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 10, 158 |
| Conread position: | 4-206 |
| Cow position: | chr9:34762561-34762772 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 8 |
| Conread position: | 4-450 |
| Cow position: | chr9:39428520-39428952 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 4-456 |
| Cow position: | chr9:5340924-5340459 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 6-184 |
| Cow position: | chr9:9416117-9416309 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 6-357 |
| Cow position: | chr9:28726434-28726780 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 195 |
| Conread position: | 6-385 |
| Cow position: | chr9:55084007-55084385 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 6-403 |
| Cow position: | chr9:17410899-17411293 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 270 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 63, 6 |
| Conread position: | 6-454 |
| Cow position: | chr9:41680026-41679587 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 316 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 7, 77 |
| Conread position: | 6-455 |
| Cow position: | chr9:39152397-39152837 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 321 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 36, 6 |
| Conread position: | 9-425 |
| Cow position: | chr9:5141362-5140950 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 71 |
| Conread position: | 10-452 |
| Cow position: | chr9:28983468-28983027 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 329 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 152 |
| Conread position: | 12-187 |
| Cow position: | chr9:10678486-10678296 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 160 |
| Conread position: | 12-191 |
| Cow position: | chr9:35850183-35849988 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 12-194 |
| Cow position: | chr9:20038876-20039052 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 101 |
| Conread position: | 12-197 |
| Cow position: | chr9:33093229-33093037 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 58 |
| Conread position: | 12-198 |
| Cow position: | chr9:23028077-23027887 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 56, 150 |
| Conread position: | 12-199 |
| Cow position: | chr9:38961152-38961353 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 191 |
| Conread position: | 12-202 |
| Cow position: | chr9:34468308-34468505 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 25, 131 |
| Conread position: | 12-381 |
| Cow position: | chr9:5319914-5319542 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 25, 159 |
| Conread position: | 12-413 |
| Cow position: | chr9:15950870-15951273 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 152 |
| Conread position: | 12-452 |
| Cow position: | chr9:43871257-43870823 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 310 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 21, 187 |
| Conread position: | 12-454 |
| Cow position: | chr9:42498114-42497653 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 319 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 197 |
| Conread position: | 13-385 |
| Cow position: | chr9:17310278-17310645 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 103 |
| Conread position: | 13-445 |
| Cow position: | chr9:3169237-3169665 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 302 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 28, 166 |
| Conread position: | 15-385 |
| Cow position: | chr9:41283310-41282931 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 15-415 |
| Cow position: | chr9:21888451-21888056 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 289 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 22, 194 |
| Conread position: | 15-457 |
| Cow position: | chr9:9823237-9823660 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 16-374 |
| Cow position: | chr9:32625279-32624935 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 8, 150 |
| Conread position: | 16-385 |
| Cow position: | chr9:51566207-51566579 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 16-404 |
| Cow position: | chr9:9443317-9443703 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 188 |
| Conread position: | 21-197 |
| Cow position: | chr9:9491068-9490876 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 181 |
| Conread position: | 21-198 |
| Cow position: | chr9:42998195-42998385 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 181 |
| Conread position: | 21-201 |
| Cow position: | chr9:16745953-16745755 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 186 |
| Conread position: | 22-457 |
| Cow position: | chr9:23043050-23042622 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 122 |
| Conread position: | 32-413 |
| Cow position: | chr9:64007624-64007994 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 141, 35 |
| Conread position: | 72-409 |
| Cow position: | chr9:34106933-34106604 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 24, 120 |
| Conread position: | 80-443 |
| Cow position: | chr9:15684590-15684932 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 97-454 |
| Cow position: | chr9:5209765-5209427 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 209, 76 |
| Conread position: | 215-455 |
| Cow position: | chr9:6851988-6852227 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 160, 30 |
| Conread position: | 218-457 |
| Cow position: | chr9:38289247-38289472 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 206, 17 |
| Conread position: | 220-451 |
| Cow position: | chr9:62330915-62331151 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 121 |
| Conread position: | 230-383 |
| Cow position: | chr9:58204752-58204591 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 230-385 |
| Cow position: | chr9:27345513-27345667 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 230-454 |
| Cow position: | chr9:35100968-35100733 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 121 |
| Conread position: | 231-437 |
| Cow position: | chr9:2863516-2863310 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 111 |
| Conread position: | 231-451 |
| Cow position: | chr9:32266310-32266539 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 116 |
| Conread position: | 238-386 |
| Cow position: | chr9:44467271-44467424 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 246-457 |
| Cow position: | chr9:5756929-5757157 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 248-454 |
| Cow position: | chr9:12499066-12498854 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 10, 94 |
| Conread position: | 248-456 |
| Cow position: | chr9:10666972-10667179 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 261-457 |
| Cow position: | chr9:32115560-32115759 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 137, 67 |
| Conread position: | 266-411 |
| Cow position: | chr9:34283989-34283844 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 107 |
| Conread position: | 268-451 |
| Cow position: | chr9:17110802-17110620 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 132, 17 |
| Conread position: | 268-451 |
| Cow position: | chr9:38580889-38580705 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 132 |
| Conread position: | 268-454 |
| Cow position: | chr9:20200327-20200145 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 133 |
| Conread position: | 280-415 |
| Cow position: | chr9:38777043-38777181 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 280-452 |
| Cow position: | chr9:5399158-5398981 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 110 |
| Conread position: | 293-457 |
| Cow position: | chr9:34431829-34431661 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 310-453 |
| Cow position: | chr9:42900888-42900746 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 95, 29 |
Show alignments to all cow chromosomes.