Cow genome map

Conread name: Mixn-0010d11

Conread position: 1-191
Cow position: chrX:45113389-45113586 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 36, 11

Conread position: 1-198
Cow position: chrX:40557915-40557708 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 11

Conread position: 2-198
Cow position: chrX:42994374-42994586 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 158

Conread position: 2-199
Cow position: chrX:2383251-2383463 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 36, 10

Conread position: 2-455
Cow position: chrX:7646020-7646471 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 326
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 31, 10

Conread position: 2-457
Cow position: chrX:30543520-30543072 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 315
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 35, 10

Conread position: 3-187
Cow position: chrX:619245-619041 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 34, 11

Conread position: 3-190
Cow position: chrX:34543548-34543751 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 200

Conread position: 3-190
Cow position: chrX:35409429-35409624 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 34

Conread position: 3-191
Cow position: chrX:23514257-23514048 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 11, 56

Conread position: 3-198
Cow position: chrX:23970152-23970349 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 34, 11

Conread position: 3-201
Cow position: chrX:4942988-4942780 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 196

Conread position: 3-201
Cow position: chrX:16284186-16283966 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 11, 192

Conread position: 3-201
Cow position: chrX:26876120-26875907 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 11, 50

Conread position: 3-201
Cow position: chrX:44053019-44053234 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 203

Conread position: 3-202
Cow position: chrX:12249566-12249779 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 167

Conread position: 3-202
Cow position: chrX:39126101-39126308 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 23

Conread position: 3-375
Cow position: chrX:11455291-11454919 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 254
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 43

Conread position: 3-412
Cow position: chrX:33855472-33855055 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 278
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 11, 203

Conread position: 3-456
Cow position: chrX:40692977-40692537 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 321
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 11, 97

Conread position: 3-457
Cow position: chrX:42011041-42011497 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 161

Conread position: 4-197
Cow position: chrX:35413394-35413593 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 101

Conread position: 4-350
Cow position: chrX:27680167-27680503 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 249
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 62, 8

Conread position: 4-450
Cow position: chrX:19878832-19879245 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 306
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 170, 8

Conread position: 4-453
Cow position: chrX:17631038-17630597 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 8

Conread position: 4-457
Cow position: chrX:39558584-39558147 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 309
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 29, 10

Conread position: 6-182
Cow position: chrX:15814863-15815043 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 6

Conread position: 6-373
Cow position: chrX:28111272-28111637 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 270
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 31, 6

Conread position: 6-412
Cow position: chrX:38094759-38094356 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 292
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 31, 6

Conread position: 6-445
Cow position: chrX:25337945-25338388 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 6

Conread position: 7-457
Cow position: chrX:32309873-32310318 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 5

Conread position: 10-451
Cow position: chrX:46073053-46072600 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 312
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 33, 198

Conread position: 11-197
Cow position: chrX:17725748-17725946 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 29

Conread position: 12-170
Cow position: chrX:31443050-31442877 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 12-196
Cow position: chrX:15147415-15147216 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 12-197
Cow position: chrX:17497867-17498057 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 25, 98

Conread position: 12-198
Cow position: chrX:23497892-23497695 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 12-198
Cow position: chrX:27516303-27516502 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 190

Conread position: 12-198
Cow position: chrX:34441679-34441478 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 25, 48

Conread position: 12-198
Cow position: chrX:34454440-34454638 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 21, 94

Conread position: 12-198
Cow position: chrX:38967421-38967621 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 25, 191

Conread position: 12-201
Cow position: chrX:2648579-2648377 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 25, 188

Conread position: 12-201
Cow position: chrX:38006997-38006788 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 197

Conread position: 12-205
Cow position: chrX:37489501-37489703 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 25, 177

Conread position: 12-369
Cow position: chrX:37910224-37910569 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 254
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 30, 11

Conread position: 12-370
Cow position: chrX:9416922-9416559 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 250
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 30, 189

Conread position: 12-385
Cow position: chrX:7695532-7695888 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 249
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 85, 146

Conread position: 12-385
Cow position: chrX:42247413-42247042 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 266
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 25, 151

Conread position: 12-386
Cow position: chrX:34565068-34565424 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 263
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 57, 25

Conread position: 12-400
Cow position: chrX:32743309-32743687 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 273
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 190

Conread position: 12-419
Cow position: chrX:7806148-7806600 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 314
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 25, 368

Conread position: 12-445
Cow position: chrX:17541735-17542165 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 312
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 25, 172

Conread position: 12-447
Cow position: chrX:19930427-19930849 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 149

Conread position: 12-447
Cow position: chrX:31260859-31260399 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 333
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 26, 160

Conread position: 12-450
Cow position: chrX:17964751-17964317 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 311
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 25, 142

Conread position: 12-451
Cow position: chrX:21664952-21664515 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 313
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 25, 40

Conread position: 12-455
Cow position: chrX:8925474-8925914 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 316
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 21, 191

Conread position: 13-201
Cow position: chrX:25232362-25232567 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 24, 193

Conread position: 13-455
Cow position: chrX:32431399-32431833 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 315
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 34, 160

Conread position: 14-187
Cow position: chrX:4123608-4123801 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 14-196
Cow position: chrX:35681118-35681312 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 187

Conread position: 15-172
Cow position: chrX:4865025-4865192 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 27, 93

Conread position: 15-196
Cow position: chrX:41743687-41743883 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 22, 189

Conread position: 15-385
Cow position: chrX:34401771-34402146 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 266
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 18, 191

Conread position: 19-196
Cow position: chrX:1503117-1503307 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 183

Conread position: 21-412
Cow position: chrX:29602053-29601661 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 282
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 12, 188

Conread position: 24-454
Cow position: chrX:29120841-29121254 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 292
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 45, 78

Conread position: 32-198
Cow position: chrX:6234656-6234479 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 37, 164

Conread position: 61-201
Cow position: chrX:31273079-31273221 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 98, 130

Conread position: 73-455
Cow position: chrX:39415518-39415156 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 275
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 86, 21

Conread position: 80-457
Cow position: chrX:10959542-10959180 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 266
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 149, 15

Conread position: 82-385
Cow position: chrX:19273867-19273567 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 200
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 34, 109

Conread position: 95-198
Cow position: chrX:24149510-24149614 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 78, 94

Conread position: 95-356
Cow position: chrX:21566271-21566518 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 41, 97

Conread position: 209-394
Cow position: chrX:23562602-23562780 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 99, 27

Conread position: 235-454
Cow position: chrX:46700862-46700641 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 26, 77

Conread position: 247-455
Cow position: chrX:27276696-27276911 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 63, 0

Conread position: 248-457
Cow position: chrX:41733204-41732987 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 170
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 40, 178

Conread position: 261-433
Cow position: chrX:39126341-39126515 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 47, 169

Conread position: 261-437
Cow position: chrX:29408007-29407828 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 145
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 48, 148

Conread position: 262-443
Cow position: chrX:29761668-29761481 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 262-451
Cow position: chrX:12304577-12304770 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 262-451
Cow position: chrX:15305283-15305086 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 82

Conread position: 263-457
Cow position: chrX:41123079-41123281 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 21

Conread position: 265-453
Cow position: chrX:43426314-43426502 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 154
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 43, 160

Conread position: 265-457
Cow position: chrX:20801788-20801972 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 155
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 42, 132

Conread position: 266-385
Cow position: chrX:43730203-43730084 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 43, 19

Conread position: 266-457
Cow position: chrX:24054691-24054897 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 274-457
Cow position: chrX:28835734-28835543 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 34, 157

Conread position: 280-454
Cow position: chrX:39832450-39832625 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 28, 47

Conread position: 280-457
Cow position: chrX:6676860-6677042 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 28, 0

Conread position: 307-447
Cow position: chrX:1727909-1727765 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 91, 0

Show alignments to all cow chromosomes.