Cow genome map

Conread name: Mixn-0014o22

Conread position: 1-121
Cow position: chr17:28024776-28024899 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 1-139
Cow position: chr17:5174689-5174830 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 1-140
Cow position: chr17:2583518-2583376 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 1-148
Cow position: chr17:1672425-1672276 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 49, 84

Conread position: 1-164
Cow position: chr17:14212892-14213057 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 76

Conread position: 1-167
Cow position: chr17:15128512-15128343 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 49, 0

Conread position: 1-167
Cow position: chr17:20225728-20225559 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 0

Conread position: 1-167
Cow position: chr17:37415762-37415931 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 136
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 49, 0

Conread position: 1-172
Cow position: chr17:14232578-14232752 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 1-173
Cow position: chr17:4635649-4635823 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 145
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 48, 171

Conread position: 1-178
Cow position: chr17:16903710-16903532 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 49, 167

Conread position: 1-192
Cow position: chr17:8212185-8211993 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 157
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 49, 11

Conread position: 1-199
Cow position: chr17:5546158-5546358 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 33, 172

Conread position: 1-200
Cow position: chr17:18777704-18777905 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 162
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 49, 171

Conread position: 1-215
Cow position: chr17:8222831-8222615 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-215
Cow position: chr17:17957723-17957514 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 48, 102

Conread position: 1-233
Cow position: chr17:14932741-14932975 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 168

Conread position: 1-238
Cow position: chr17:5806363-5806602 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-238
Cow position: chr17:14865258-14865497 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-245
Cow position: chr17:5638763-5639009 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-245
Cow position: chr17:5672391-5672637 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-262
Cow position: chr17:6262982-6262720 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-265
Cow position: chr17:15438917-15438653 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 112

Conread position: 1-267
Cow position: chr17:1457253-1457523 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 58, 42

Conread position: 1-268
Cow position: chr17:43991614-43991346 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 95

Conread position: 1-270
Cow position: chr17:184273-184002 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:1970277-1970006 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:2244940-2245203 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 49, 88

Conread position: 1-270
Cow position: chr17:4480756-4481027 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 171

Conread position: 1-270
Cow position: chr17:6122909-6122638 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 171

Conread position: 1-270
Cow position: chr17:15117943-15117672 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:15140213-15140483 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:15325110-15325380 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:15708867-15709138 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:15809113-15808842 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:17128131-17127851 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 49, 168

Conread position: 1-270
Cow position: chr17:18099948-18100220 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-270
Cow position: chr17:19215269-19215539 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 120

Conread position: 1-270
Cow position: chr17:20084687-20084957 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 49, 104

Conread position: 1-270
Cow position: chr17:20094032-20094301 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 146

Conread position: 1-270
Cow position: chr17:20390900-20390629 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:20546263-20545992 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:23321293-23321565 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 42

Conread position: 1-270
Cow position: chr17:24785316-24785045 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:26829618-26829888 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:27791656-27791918 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 89

Conread position: 1-270
Cow position: chr17:29824835-29825106 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:30182454-30182725 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:34236125-34236396 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:37528846-37529117 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr17:44641344-44641615 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr17:138734-138465 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 1-274
Cow position: chr17:11084009-11084272 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr17:13931021-13930749 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 41

Conread position: 1-274
Cow position: chr17:15328407-15328133 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr17:21767023-21766749 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 44, 171

Conread position: 1-274
Cow position: chr17:24026857-24027131 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr17:25739422-25739156 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 147

Conread position: 1-274
Cow position: chr17:29950338-29950067 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 1-274
Cow position: chr17:40810877-40810602 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-277
Cow position: chr17:2177106-2176832 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 47, 171

Conread position: 1-277
Cow position: chr17:29075229-29075493 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 40, 89

Conread position: 1-288
Cow position: chr17:4085193-4084906 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 95

Conread position: 1-298
Cow position: chr17:6612148-6611848 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-312
Cow position: chr17:1784415-1784731 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 124

Conread position: 1-318
Cow position: chr17:2265315-2264998 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 89

Conread position: 3-190
Cow position: chr17:31232801-31232614 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 47, 114

Conread position: 3-234
Cow position: chr17:36159928-36160149 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 47, 69

Conread position: 3-264
Cow position: chr17:14029222-14029484 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 168

Conread position: 3-270
Cow position: chr17:14249984-14250257 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 47, 174

Conread position: 3-270
Cow position: chr17:21770804-21770535 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-270
Cow position: chr17:43471467-43471735 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 72

Conread position: 3-319
Cow position: chr17:2178972-2178672 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 101, 39

Conread position: 4-160
Cow position: chr17:6955762-6955612 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 4-187
Cow position: chr17:13910485-13910673 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 44, 168

Conread position: 4-264
Cow position: chr17:22563268-22563007 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 46, 168

Conread position: 4-270
Cow position: chr17:8205069-8204796 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 49, 174

Conread position: 5-237
Cow position: chr17:18200859-18200626 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 37

Conread position: 5-264
Cow position: chr17:1311640-1311901 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 167

Conread position: 5-270
Cow position: chr17:22774328-22774581 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 39

Conread position: 6-274
Cow position: chr17:15307276-15307524 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 54, 34

Conread position: 8-264
Cow position: chr17:16118340-16118592 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 83

Conread position: 14-258
Cow position: chr17:43231055-43231300 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 158

Conread position: 16-270
Cow position: chr17:15374516-15374267 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 34, 89

Show alignments to all cow chromosomes.